Experiment: Bile salts 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0226 and BT0227 are separated by 20 nucleotides BT0227 and BT0228 are separated by 244 nucleotides BT0228 and BT0229 are separated by 189 nucleotides
BT0226: BT0226 - hypothetical protein (NCBI ptt file), at 245,914 to 246,459
BT0226
BT0227: BT0227 - hypothetical protein (NCBI ptt file), at 246,480 to 247,109
BT0227
BT0228: BT0228 - putative protein involved in recombination (NCBI ptt file), at 247,354 to 249,387
BT0228
BT0229: BT0229 - conserved hypothetical protein (NCBI ptt file), at 249,577 to 250,602
BT0229
Position (kb) 247
248
249
250 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 246.393 kb on + strand, within BT0226 at 246.404 kb on - strand, within BT0226 at 246.463 kb on - strand at 246.490 kb on + strand at 246.507 kb on + strand at 246.540 kb on - strand at 246.576 kb on - strand, within BT0227 at 246.686 kb on + strand, within BT0227 at 246.687 kb on - strand, within BT0227 at 246.696 kb on - strand, within BT0227 at 246.801 kb on + strand, within BT0227 at 246.802 kb on - strand, within BT0227 at 246.827 kb on - strand, within BT0227 at 246.836 kb on - strand, within BT0227 at 246.972 kb on + strand, within BT0227 at 247.027 kb on - strand, within BT0227 at 247.093 kb on - strand at 247.109 kb on + strand at 247.110 kb on - strand at 247.124 kb on - strand at 247.157 kb on + strand at 247.160 kb on + strand at 247.190 kb on - strand at 247.227 kb on - strand at 247.242 kb on + strand at 247.243 kb on - strand at 247.284 kb on + strand at 247.301 kb on - strand at 247.311 kb on - strand at 247.402 kb on + strand at 247.469 kb on + strand at 247.469 kb on + strand at 247.470 kb on - strand at 247.483 kb on - strand at 247.649 kb on - strand, within BT0228 at 247.659 kb on + strand, within BT0228 at 247.660 kb on - strand, within BT0228 at 247.675 kb on - strand, within BT0228 at 247.707 kb on - strand, within BT0228 at 247.710 kb on - strand, within BT0228 at 247.710 kb on - strand, within BT0228 at 247.712 kb on - strand, within BT0228 at 247.815 kb on - strand, within BT0228 at 247.819 kb on - strand, within BT0228 at 247.971 kb on - strand, within BT0228 at 247.987 kb on - strand, within BT0228 at 247.987 kb on - strand, within BT0228 at 247.990 kb on - strand, within BT0228 at 248.157 kb on + strand, within BT0228 at 248.173 kb on - strand, within BT0228 at 248.177 kb on + strand, within BT0228 at 248.178 kb on - strand, within BT0228 at 248.183 kb on + strand, within BT0228 at 248.271 kb on - strand, within BT0228 at 248.316 kb on + strand, within BT0228 at 248.486 kb on - strand, within BT0228 at 248.564 kb on + strand, within BT0228 at 248.565 kb on - strand, within BT0228 at 248.569 kb on - strand, within BT0228 at 248.585 kb on + strand, within BT0228 at 248.777 kb on + strand, within BT0228 at 248.936 kb on + strand, within BT0228 at 248.937 kb on - strand, within BT0228 at 248.937 kb on - strand, within BT0228 at 249.110 kb on + strand, within BT0228 at 249.110 kb on + strand, within BT0228 at 249.110 kb on + strand, within BT0228 at 249.238 kb on - strand at 249.257 kb on - strand at 249.419 kb on + strand at 249.459 kb on - strand at 249.461 kb on + strand at 249.462 kb on - strand at 249.891 kb on + strand, within BT0229 at 249.892 kb on - strand, within BT0229 at 250.070 kb on + strand, within BT0229 at 250.112 kb on + strand, within BT0229 at 250.113 kb on - strand, within BT0229 at 250.113 kb on - strand, within BT0229 at 250.186 kb on - strand, within BT0229 at 250.187 kb on + strand, within BT0229 at 250.256 kb on + strand, within BT0229 at 250.302 kb on + strand, within BT0229 at 250.320 kb on - strand, within BT0229 at 250.386 kb on + strand, within BT0229
Per-strain Table
Position Strand Gene LocusTag Fraction Bile salts 0.5 mg/ml remove 246,393 + BT0226 0.88 -2.5 246,404 - BT0226 0.90 -0.6 246,463 - -1.3 246,490 + +1.3 246,507 + -1.8 246,540 - +1.7 246,576 - BT0227 0.15 -0.6 246,686 + BT0227 0.33 +1.2 246,687 - BT0227 0.33 -1.1 246,696 - BT0227 0.34 +0.7 246,801 + BT0227 0.51 -2.9 246,802 - BT0227 0.51 +1.1 246,827 - BT0227 0.55 -0.3 246,836 - BT0227 0.57 +0.7 246,972 + BT0227 0.78 -1.4 247,027 - BT0227 0.87 +0.7 247,093 - -0.3 247,109 + -0.1 247,110 - -2.3 247,124 - -1.5 247,157 + +1.7 247,160 + -2.0 247,190 - +0.1 247,227 - -1.0 247,242 + -1.8 247,243 - -2.0 247,284 + -1.3 247,301 - +0.1 247,311 - -2.4 247,402 + -1.6 247,469 + +0.1 247,469 + -1.9 247,470 - -2.4 247,483 - -0.9 247,649 - BT0228 0.15 -0.6 247,659 + BT0228 0.15 -2.1 247,660 - BT0228 0.15 -1.1 247,675 - BT0228 0.16 +0.7 247,707 - BT0228 0.17 -1.0 247,710 - BT0228 0.18 -1.8 247,710 - BT0228 0.18 -1.2 247,712 - BT0228 0.18 -1.5 247,815 - BT0228 0.23 -2.4 247,819 - BT0228 0.23 -2.0 247,971 - BT0228 0.30 -0.6 247,987 - BT0228 0.31 -0.5 247,987 - BT0228 0.31 -1.3 247,990 - BT0228 0.31 -0.3 248,157 + BT0228 0.39 +0.7 248,173 - BT0228 0.40 -1.4 248,177 + BT0228 0.40 +3.7 248,178 - BT0228 0.41 -1.5 248,183 + BT0228 0.41 -0.6 248,271 - BT0228 0.45 +0.1 248,316 + BT0228 0.47 +1.1 248,486 - BT0228 0.56 +1.1 248,564 + BT0228 0.59 -0.9 248,565 - BT0228 0.60 -0.9 248,569 - BT0228 0.60 -2.0 248,585 + BT0228 0.61 -1.6 248,777 + BT0228 0.70 -2.4 248,936 + BT0228 0.78 -2.4 248,937 - BT0228 0.78 -2.3 248,937 - BT0228 0.78 -1.8 249,110 + BT0228 0.86 -0.3 249,110 + BT0228 0.86 -1.7 249,110 + BT0228 0.86 -1.6 249,238 - -1.8 249,257 - -0.8 249,419 + -0.4 249,459 - -0.1 249,461 + -1.3 249,462 - +0.1 249,891 + BT0229 0.31 -1.5 249,892 - BT0229 0.31 -0.9 250,070 + BT0229 0.48 +0.4 250,112 + BT0229 0.52 +2.1 250,113 - BT0229 0.52 -0.9 250,113 - BT0229 0.52 -0.1 250,186 - BT0229 0.59 -2.2 250,187 + BT0229 0.59 -0.6 250,256 + BT0229 0.66 -1.5 250,302 + BT0229 0.71 +0.1 250,320 - BT0229 0.72 -0.3 250,386 + BT0229 0.79 -1.5
Or see this region's nucleotide sequence