Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS24460

Experiment: nitrite (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite (N)
5,479,735	-				+0.4
5,479,735	-				+0.6
5,479,735	-				-1.7
5,479,735	-				-1.8
5,479,735	-				+0.5
5,479,735	-				-2.5
5,479,735	-				+0.8
5,479,739	-				+0.3
5,479,739	-				-0.8
5,479,739	-				-1.1
5,479,749	-				-0.5
5,479,749	-				-0.2
5,479,749	-				-1.7
5,479,749	-				-2.5
5,479,749	-				+0.8
5,479,749	-				-0.4
5,479,749	-				-1.9
5,479,749	-				-0.8
5,479,755	-				+1.2
5,479,755	-				-1.5
5,479,755	-				+0.2
5,479,758	-				-2.1
5,479,758	-				+0.6
5,479,758	-				-1.9
5,479,758	-				+0.1
5,479,758	-				-1.8
5,479,758	-				+0.5
5,479,758	-				-2.7
5,479,758	-				-1.2
5,479,758	-				-0.1
5,479,758	-				-1.1
5,479,758	-				-2.2
5,479,758	-				+0.7
5,479,758	-				-0.7
5,479,758	-				-0.1
5,479,758	-				-1.5
5,479,843	+				-1.3
5,479,843	+				-1.0
5,479,844	-				-0.5
5,479,844	-				+1.1
5,480,006	+		PFLU_RS24455	0.34	-0.2
5,480,006	+		PFLU_RS24455	0.34	-0.1
5,480,007	-		PFLU_RS24455	0.35	-0.5
5,480,051	+		PFLU_RS24455	0.44	-0.3
5,480,052	-		PFLU_RS24455	0.44	+0.1
5,480,154	+		PFLU_RS24455	0.65	+1.8
5,480,154	+		PFLU_RS24455	0.65	-1.3
5,480,154	+		PFLU_RS24455	0.65	-0.1
5,480,154	+		PFLU_RS24455	0.65	-0.3
5,480,155	-		PFLU_RS24455	0.66	-1.4
5,480,155	-		PFLU_RS24455	0.66	+0.3
5,480,155	-		PFLU_RS24455	0.66	-0.8
5,480,155	-		PFLU_RS24455	0.66	-2.8
5,480,155	-		PFLU_RS24455	0.66	-2.4
5,480,155	-		PFLU_RS24455	0.66	-1.5
5,480,265	+		PFLU_RS24455	0.89	+1.2
5,480,265	+		PFLU_RS24455	0.89	-0.5
5,480,266	-		PFLU_RS24455	0.89	+0.2
5,480,304	+				+0.1
5,480,304	+				+0.8
5,480,304	+				+0.1
5,480,305	-				-2.3
5,480,360	+				-1.1
5,480,360	+				-0.5
5,480,360	+				-1.4
5,480,360	+				+0.8
5,480,360	+				+1.3
5,480,360	+				+1.8
5,480,360	+				+1.3
5,480,360	+				-0.1
5,480,360	+				+1.1
5,480,360	+				-1.1
5,480,360	+				-0.6
5,480,360	+				-1.3
5,480,360	+				-0.2
5,480,361	-				-2.1
5,480,361	-				-1.7
5,480,361	-				-0.3
5,480,361	-				-2.3
5,480,361	-				-0.3
5,480,361	-				+0.2
5,480,361	-				-0.9
5,480,361	-				+0.0
5,480,361	-				-1.8
5,480,361	-				-0.9
5,480,361	-				+1.2
5,480,361	-				+0.0
5,480,361	-				-1.7
5,480,361	-				-0.2
5,480,361	-				-0.1
5,480,361	-				-0.0
5,480,361	-				-0.9
5,480,361	-				-1.9
5,480,361	-				-3.3
5,480,361	-				-0.5
5,480,361	-				-0.8
5,480,510	+		PFLU_RS24460	0.17	-0.1
5,480,522	+		PFLU_RS24460	0.19	+0.6
5,480,522	+		PFLU_RS24460	0.19	-0.4
5,480,522	+		PFLU_RS24460	0.19	-0.1
5,480,522	+		PFLU_RS24460	0.19	+0.0
5,480,522	+		PFLU_RS24460	0.19	+0.1
5,480,522	+		PFLU_RS24460	0.19	-0.3
5,480,522	+		PFLU_RS24460	0.19	+2.4
5,480,523	-		PFLU_RS24460	0.19	-2.1
5,480,523	-		PFLU_RS24460	0.19	-1.2
5,480,523	-		PFLU_RS24460	0.19	+0.6
5,480,587	+		PFLU_RS24460	0.28	+2.4
5,480,587	+		PFLU_RS24460	0.28	-1.1
5,480,587	+		PFLU_RS24460	0.28	-0.6
5,480,587	+		PFLU_RS24460	0.28	+0.9
5,480,587	+		PFLU_RS24460	0.28	-0.3
5,480,587	+		PFLU_RS24460	0.28	+1.0
5,480,587	+		PFLU_RS24460	0.28	+1.5
5,480,587	+		PFLU_RS24460	0.28	-0.1
5,480,588	-		PFLU_RS24460	0.28	-1.1
5,480,588	-		PFLU_RS24460	0.28	-0.2
5,480,588	-		PFLU_RS24460	0.28	+0.5
5,480,588	-		PFLU_RS24460	0.28	-0.1
5,480,588	-		PFLU_RS24460	0.28	+0.5
5,480,588	-		PFLU_RS24460	0.28	-1.3
5,480,713	+		PFLU_RS24460	0.45	+0.0
5,480,714	-		PFLU_RS24460	0.45	-0.5
5,480,714	-		PFLU_RS24460	0.45	-0.5
5,480,767	+		PFLU_RS24460	0.52	+2.5
5,480,767	+		PFLU_RS24460	0.52	-1.0
5,480,767	+		PFLU_RS24460	0.52	+2.5
5,480,767	+		PFLU_RS24460	0.52	+0.9
5,480,767	+		PFLU_RS24460	0.52	+0.5
5,480,767	+		PFLU_RS24460	0.52	+0.1
5,480,767	+		PFLU_RS24460	0.52	-1.3
5,480,767	+		PFLU_RS24460	0.52	-0.9
5,480,767	+		PFLU_RS24460	0.52	-0.4
5,480,767	+		PFLU_RS24460	0.52	+0.5
5,480,767	+		PFLU_RS24460	0.52	-0.9
5,480,768	-		PFLU_RS24460	0.52	-1.8
5,480,768	-		PFLU_RS24460	0.52	-0.8
5,480,768	-		PFLU_RS24460	0.52	-0.9
5,480,768	-		PFLU_RS24460	0.52	+0.8
5,480,768	-		PFLU_RS24460	0.52	-0.7
5,480,768	-		PFLU_RS24460	0.52	-0.8
5,480,768	-		PFLU_RS24460	0.52	+1.0
5,480,768	-		PFLU_RS24460	0.52	-0.3
5,480,788	+		PFLU_RS24460	0.55	+0.8
5,480,788	+		PFLU_RS24460	0.55	-1.9
5,480,788	+		PFLU_RS24460	0.55	-1.2
5,480,788	+		PFLU_RS24460	0.55	+0.3
5,480,788	+		PFLU_RS24460	0.55	+0.4
5,480,789	-		PFLU_RS24460	0.55	+0.3
5,480,789	-		PFLU_RS24460	0.55	-1.3
5,480,789	-		PFLU_RS24460	0.55	+1.5
5,480,789	-		PFLU_RS24460	0.55	-0.8
5,480,789	-		PFLU_RS24460	0.55	-0.1
5,480,795	-		PFLU_RS24460	0.56	+0.2
5,480,797	+		PFLU_RS24460	0.56	+0.6
5,480,797	+		PFLU_RS24460	0.56	-0.5
5,480,797	+		PFLU_RS24460	0.56	-0.1
5,480,797	+		PFLU_RS24460	0.56	-1.7
5,480,797	+		PFLU_RS24460	0.56	+1.5
5,480,797	+		PFLU_RS24460	0.56	-0.5
5,480,798	-		PFLU_RS24460	0.56	-0.8
5,480,798	-		PFLU_RS24460	0.56	-0.5
5,480,798	-		PFLU_RS24460	0.56	-0.8
5,480,798	-		PFLU_RS24460	0.56	+0.9
5,480,798	-		PFLU_RS24460	0.56	+0.8
5,480,798	-		PFLU_RS24460	0.56	-1.2
5,480,857	+		PFLU_RS24460	0.64	+0.8
5,480,857	+		PFLU_RS24460	0.64	+1.4
5,480,857	+		PFLU_RS24460	0.64	-0.4
5,480,857	+		PFLU_RS24460	0.64	+0.5
5,480,857	+		PFLU_RS24460	0.64	-1.1
5,480,858	-		PFLU_RS24460	0.65	+0.3
5,480,858	-		PFLU_RS24460	0.65	+0.9
5,480,858	-		PFLU_RS24460	0.65	+0.9
5,480,858	-		PFLU_RS24460	0.65	+0.3
5,480,858	-		PFLU_RS24460	0.65	-1.5
5,481,002	-		PFLU_RS24460	0.84	-0.2
5,481,002	-		PFLU_RS24460	0.84	-1.4
5,481,067	+				+1.2
5,481,068	-				-1.8
5,481,068	-				+0.5
5,481,152	+				+2.4
5,481,153	-				+0.1
5,481,177	+				-0.4
5,481,177	+				-0.0
5,481,177	+				+1.2
5,481,177	+				+1.3
5,481,177	+				+0.7
5,481,178	-				-0.2
5,481,178	-				-0.3
5,481,178	-				+0.8
5,481,178	-				+1.2
5,481,178	-				+0.7
5,481,178	-				+0.0
5,481,178	-				-0.2
5,481,186	+				-0.9
5,481,186	+				+0.9
5,481,186	+				-0.5
5,481,186	+				+0.6
5,481,186	+				+0.5
5,481,186	+				+1.0
5,481,187	-				+0.7
5,481,187	-				-0.7
5,481,187	-				+1.2
5,481,187	-				+0.3
5,481,187	-				+0.4
5,481,187	-				+1.1
5,481,187	-				+0.6
5,481,187	-				+0.5
5,481,235	+				-0.1
5,481,236	-				+1.0
5,481,262	+				+0.8
5,481,262	+				+1.2
5,481,263	-				+0.4
5,481,352	+		PFLU_RS24465	0.12	-0.1
5,481,352	+		PFLU_RS24465	0.12	-0.2
5,481,353	-		PFLU_RS24465	0.12	+0.0
5,481,382	+		PFLU_RS24465	0.15	+1.2
5,481,383	-		PFLU_RS24465	0.15	-0.2
5,481,383	-		PFLU_RS24465	0.15	-0.6
5,481,455	-		PFLU_RS24465	0.22	+0.5
5,481,455	-		PFLU_RS24465	0.22	+1.2
5,481,455	-		PFLU_RS24465	0.22	-0.6
5,481,463	+		PFLU_RS24465	0.23	-0.3
5,481,463	+		PFLU_RS24465	0.23	+0.2
5,481,463	+		PFLU_RS24465	0.23	-1.0
5,481,463	+		PFLU_RS24465	0.23	+0.8
5,481,463	+		PFLU_RS24465	0.23	+0.5
5,481,463	+		PFLU_RS24465	0.23	+0.2
5,481,463	+		PFLU_RS24465	0.23	+1.0
5,481,463	+		PFLU_RS24465	0.23	+2.7
5,481,463	+		PFLU_RS24465	0.23	+0.8
5,481,463	+		PFLU_RS24465	0.23	-1.1
5,481,463	+		PFLU_RS24465	0.23	+2.0
5,481,464	-		PFLU_RS24465	0.23	-1.1
5,481,464	-		PFLU_RS24465	0.23	+1.5
5,481,464	-		PFLU_RS24465	0.23	+1.5
5,481,464	-		PFLU_RS24465	0.23	-1.7
5,481,464	-		PFLU_RS24465	0.23	+1.0
5,481,464	-		PFLU_RS24465	0.23	+0.9
5,481,464	-		PFLU_RS24465	0.23	+1.0
5,481,464	-		PFLU_RS24465	0.23	+0.7
5,481,464	-		PFLU_RS24465	0.23	+0.1
5,481,464	-		PFLU_RS24465	0.23	-0.2
5,481,464	-		PFLU_RS24465	0.23	-1.4
5,481,464	-		PFLU_RS24465	0.23	+2.5
5,481,464	-		PFLU_RS24465	0.23	+0.7
5,481,464	-		PFLU_RS24465	0.23	+0.9
5,481,464	-		PFLU_RS24465	0.23	+0.9
5,481,464	-		PFLU_RS24465	0.23	+0.8
5,481,464	-		PFLU_RS24465	0.23	-0.0
5,481,464	-		PFLU_RS24465	0.23	+1.0
5,481,464	-		PFLU_RS24465	0.23	+1.1
5,481,487	+		PFLU_RS24465	0.25	+0.8
5,481,487	+		PFLU_RS24465	0.25	+0.3
5,481,488	-		PFLU_RS24465	0.25	+0.3
5,481,488	-		PFLU_RS24465	0.25	+0.8
5,481,514	+		PFLU_RS24465	0.28	+0.6
5,481,520	+		PFLU_RS24465	0.28	+1.9
5,481,520	+		PFLU_RS24465	0.28	+0.5
5,481,583	+		PFLU_RS24465	0.35	+0.4
5,481,605	+		PFLU_RS24465	0.37	+0.7
5,481,605	+		PFLU_RS24465	0.37	+1.5
5,481,605	+		PFLU_RS24465	0.37	+0.1
5,481,606	-		PFLU_RS24465	0.37	+1.2
5,481,606	-		PFLU_RS24465	0.37	+0.5
5,481,643	+		PFLU_RS24465	0.41	-1.1
5,481,643	+		PFLU_RS24465	0.41	+0.3
5,481,643	+		PFLU_RS24465	0.41	+1.4
5,481,643	+		PFLU_RS24465	0.41	+1.4
5,481,643	+		PFLU_RS24465	0.41	+0.5
5,481,644	-		PFLU_RS24465	0.41	+0.8
5,481,644	-		PFLU_RS24465	0.41	+1.2
5,481,644	-		PFLU_RS24465	0.41	+0.3
5,481,644	-		PFLU_RS24465	0.41	+0.8
5,481,644	-		PFLU_RS24465	0.41	+1.9
5,481,644	-		PFLU_RS24465	0.41	-0.1
5,481,644	-		PFLU_RS24465	0.41	-0.1
5,481,644	-		PFLU_RS24465	0.41	+0.4
5,481,697	+		PFLU_RS24465	0.46	-0.9
5,481,697	+		PFLU_RS24465	0.46	+0.7
5,481,697	+		PFLU_RS24465	0.46	-0.2
5,481,751	+		PFLU_RS24465	0.51	+0.7
5,481,751	+		PFLU_RS24465	0.51	+1.1
5,481,751	+		PFLU_RS24465	0.51	+0.1
5,481,752	-		PFLU_RS24465	0.51	+0.5
5,481,752	-		PFLU_RS24465	0.51	+0.6
5,481,752	-		PFLU_RS24465	0.51	+1.1
5,481,752	-		PFLU_RS24465	0.51	-2.0
5,481,814	+		PFLU_RS24465	0.58	+0.1
5,481,814	+		PFLU_RS24465	0.58	-3.1
5,481,814	+		PFLU_RS24465	0.58	+1.0
5,481,815	-		PFLU_RS24465	0.58	+0.7
5,481,815	-		PFLU_RS24465	0.58	-0.3
5,481,815	-		PFLU_RS24465	0.58	+2.5
5,481,844	+		PFLU_RS24465	0.61	+0.5
5,481,844	+		PFLU_RS24465	0.61	-0.5
5,481,844	+		PFLU_RS24465	0.61	+0.1
5,481,844	+		PFLU_RS24465	0.61	-0.8
5,481,844	+		PFLU_RS24465	0.61	+0.3
5,481,844	+		PFLU_RS24465	0.61	+0.9
5,481,844	+		PFLU_RS24465	0.61	+0.2
5,481,844	+		PFLU_RS24465	0.61	+1.0
5,481,844	+		PFLU_RS24465	0.61	+0.9
5,481,844	+		PFLU_RS24465	0.61	+1.6
5,481,844	+		PFLU_RS24465	0.61	-0.7
5,481,845	-		PFLU_RS24465	0.61	+1.8
5,481,845	-		PFLU_RS24465	0.61	+2.0
5,481,845	-		PFLU_RS24465	0.61	+0.1
5,481,845	-		PFLU_RS24465	0.61	+0.7
5,481,845	-		PFLU_RS24465	0.61	+0.8
5,481,921	-		PFLU_RS24465	0.68	-0.3
5,482,036	-		PFLU_RS24465	0.80	+0.2
5,482,036	-		PFLU_RS24465	0.80	+0.8
5,482,096	+		PFLU_RS24465	0.86	-1.5
5,482,097	-		PFLU_RS24465	0.86	+0.4