Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_21205 and IAI47_21210 overlap by 8 nucleotides IAI47_21210 and IAI47_21215 are separated by 697 nucleotides
IAI47_21205: IAI47_21205 - DUF4401 domain-containing protein, at 496,048 to 498,255
_21205
IAI47_21210: IAI47_21210 - GDYXXLXY domain-containing protein, at 498,248 to 498,778
_21210
IAI47_21215: IAI47_21215 - thymidylate kinase, at 499,476 to 500,084
_21215
Position (kb) 498
499 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 497.288 kb on + strand, within IAI47_21205 at 497.308 kb on + strand, within IAI47_21205 at 497.309 kb on - strand, within IAI47_21205 at 497.321 kb on + strand, within IAI47_21205 at 497.321 kb on + strand, within IAI47_21205 at 497.349 kb on + strand, within IAI47_21205 at 497.349 kb on + strand, within IAI47_21205 at 497.349 kb on + strand, within IAI47_21205 at 497.349 kb on + strand, within IAI47_21205 at 497.350 kb on - strand, within IAI47_21205 at 497.394 kb on - strand, within IAI47_21205 at 497.412 kb on + strand, within IAI47_21205 at 497.413 kb on - strand, within IAI47_21205 at 497.413 kb on - strand, within IAI47_21205 at 497.413 kb on - strand, within IAI47_21205 at 497.413 kb on - strand, within IAI47_21205 at 497.439 kb on + strand, within IAI47_21205 at 497.440 kb on - strand, within IAI47_21205 at 497.440 kb on - strand, within IAI47_21205 at 497.440 kb on - strand, within IAI47_21205 at 497.505 kb on + strand, within IAI47_21205 at 497.505 kb on + strand, within IAI47_21205 at 497.505 kb on + strand, within IAI47_21205 at 497.506 kb on - strand, within IAI47_21205 at 497.506 kb on - strand, within IAI47_21205 at 497.506 kb on - strand, within IAI47_21205 at 497.506 kb on - strand, within IAI47_21205 at 497.576 kb on - strand, within IAI47_21205 at 497.738 kb on + strand, within IAI47_21205 at 497.752 kb on + strand, within IAI47_21205 at 497.752 kb on + strand, within IAI47_21205 at 497.753 kb on - strand, within IAI47_21205 at 497.765 kb on + strand, within IAI47_21205 at 497.765 kb on + strand, within IAI47_21205 at 497.765 kb on + strand, within IAI47_21205 at 497.765 kb on + strand, within IAI47_21205 at 497.766 kb on - strand, within IAI47_21205 at 497.766 kb on - strand, within IAI47_21205 at 497.766 kb on - strand, within IAI47_21205 at 497.766 kb on - strand, within IAI47_21205 at 497.779 kb on + strand, within IAI47_21205 at 497.779 kb on + strand, within IAI47_21205 at 497.779 kb on + strand, within IAI47_21205 at 497.779 kb on + strand, within IAI47_21205 at 497.779 kb on + strand, within IAI47_21205 at 497.780 kb on - strand, within IAI47_21205 at 497.780 kb on - strand, within IAI47_21205 at 497.780 kb on - strand, within IAI47_21205 at 497.780 kb on - strand, within IAI47_21205 at 497.780 kb on - strand, within IAI47_21205 at 497.780 kb on - strand, within IAI47_21205 at 497.786 kb on + strand, within IAI47_21205 at 497.822 kb on + strand, within IAI47_21205 at 497.887 kb on - strand, within IAI47_21205 at 497.913 kb on - strand, within IAI47_21205 at 497.913 kb on - strand, within IAI47_21205 at 497.913 kb on - strand, within IAI47_21205 at 498.056 kb on - strand at 498.087 kb on + strand at 498.098 kb on + strand at 498.099 kb on - strand at 498.106 kb on + strand at 498.106 kb on + strand at 498.106 kb on + strand at 498.107 kb on - strand at 498.122 kb on - strand at 498.122 kb on - strand at 498.122 kb on - strand at 498.122 kb on - strand at 498.124 kb on + strand at 498.124 kb on + strand at 498.124 kb on + strand at 498.124 kb on + strand at 498.124 kb on + strand at 498.125 kb on - strand at 498.253 kb on + strand at 498.253 kb on + strand at 498.282 kb on + strand at 498.283 kb on - strand at 498.283 kb on - strand at 498.283 kb on - strand at 498.283 kb on - strand at 498.285 kb on + strand at 498.286 kb on - strand at 498.286 kb on - strand at 498.363 kb on + strand, within IAI47_21210 at 498.364 kb on - strand, within IAI47_21210 at 498.407 kb on + strand, within IAI47_21210 at 498.407 kb on + strand, within IAI47_21210 at 498.407 kb on + strand, within IAI47_21210 at 498.407 kb on + strand, within IAI47_21210 at 498.407 kb on + strand, within IAI47_21210 at 498.407 kb on + strand, within IAI47_21210 at 498.408 kb on - strand, within IAI47_21210 at 498.408 kb on - strand, within IAI47_21210 at 498.408 kb on - strand, within IAI47_21210 at 498.408 kb on - strand, within IAI47_21210 at 498.422 kb on + strand, within IAI47_21210 at 498.422 kb on + strand, within IAI47_21210 at 498.423 kb on - strand, within IAI47_21210 at 498.455 kb on + strand, within IAI47_21210 at 498.456 kb on - strand, within IAI47_21210 at 498.456 kb on - strand, within IAI47_21210 at 498.456 kb on - strand, within IAI47_21210 at 498.456 kb on - strand, within IAI47_21210 at 498.456 kb on - strand, within IAI47_21210 at 498.456 kb on - strand, within IAI47_21210 at 498.609 kb on - strand, within IAI47_21210 at 498.609 kb on - strand, within IAI47_21210 at 498.609 kb on - strand, within IAI47_21210 at 498.609 kb on - strand, within IAI47_21210 at 498.609 kb on - strand, within IAI47_21210 at 498.620 kb on + strand, within IAI47_21210 at 498.621 kb on - strand, within IAI47_21210 at 498.621 kb on - strand, within IAI47_21210 at 498.621 kb on - strand, within IAI47_21210 at 498.621 kb on - strand, within IAI47_21210 at 498.644 kb on - strand, within IAI47_21210 at 498.650 kb on + strand, within IAI47_21210 at 498.650 kb on + strand, within IAI47_21210 at 498.650 kb on + strand, within IAI47_21210 at 498.651 kb on - strand, within IAI47_21210 at 498.760 kb on + strand at 498.761 kb on - strand at 498.776 kb on + strand at 498.776 kb on + strand at 498.777 kb on - strand at 498.777 kb on - strand at 498.783 kb on - strand at 498.793 kb on + strand at 498.836 kb on + strand at 498.836 kb on + strand at 498.836 kb on + strand at 498.837 kb on - strand at 498.846 kb on + strand at 498.846 kb on + strand at 498.875 kb on + strand at 498.876 kb on - strand at 498.876 kb on - strand at 498.876 kb on - strand at 498.958 kb on + strand at 498.958 kb on + strand at 498.958 kb on + strand at 498.958 kb on + strand at 498.958 kb on + strand at 498.958 kb on + strand at 498.958 kb on + strand at 498.959 kb on - strand at 498.959 kb on - strand at 498.959 kb on - strand at 498.960 kb on + strand at 498.960 kb on + strand at 498.960 kb on + strand at 498.960 kb on + strand at 498.960 kb on + strand at 498.960 kb on + strand at 498.960 kb on + strand at 498.960 kb on + strand at 498.960 kb on + strand at 498.960 kb on + strand at 498.960 kb on + strand at 498.961 kb on - strand at 498.961 kb on - strand at 498.961 kb on - strand at 498.961 kb on - strand at 498.961 kb on - strand at 498.961 kb on - strand at 498.961 kb on - strand at 498.961 kb on - strand at 498.961 kb on - strand at 498.961 kb on - strand at 498.961 kb on - strand at 498.961 kb on - strand at 498.961 kb on - strand at 498.961 kb on - strand at 498.988 kb on - strand at 499.025 kb on + strand at 499.025 kb on + strand at 499.025 kb on + strand at 499.045 kb on + strand at 499.093 kb on + strand at 499.124 kb on + strand at 499.124 kb on + strand at 499.124 kb on + strand at 499.124 kb on + strand at 499.124 kb on + strand at 499.125 kb on - strand at 499.125 kb on - strand at 499.153 kb on + strand at 499.153 kb on + strand at 499.154 kb on - strand at 499.154 kb on - strand at 499.154 kb on - strand at 499.158 kb on + strand at 499.158 kb on + strand at 499.158 kb on + strand at 499.158 kb on + strand at 499.158 kb on + strand at 499.158 kb on + strand at 499.159 kb on - strand at 499.180 kb on + strand at 499.188 kb on + strand at 499.188 kb on + strand at 499.189 kb on - strand at 499.201 kb on + strand at 499.202 kb on - strand at 499.202 kb on - strand at 499.241 kb on + strand at 499.241 kb on + strand at 499.241 kb on + strand at 499.252 kb on + strand at 499.252 kb on + strand at 499.253 kb on - strand at 499.283 kb on + strand at 499.284 kb on - strand at 499.284 kb on - strand at 499.284 kb on - strand at 499.341 kb on + strand at 499.342 kb on - strand at 499.342 kb on - strand at 499.348 kb on + strand at 499.348 kb on + strand at 499.348 kb on + strand at 499.370 kb on + strand at 499.370 kb on + strand at 499.371 kb on - strand at 499.372 kb on + strand at 499.372 kb on + strand at 499.372 kb on + strand at 499.372 kb on + strand at 499.372 kb on + strand at 499.373 kb on - strand at 499.373 kb on - strand at 499.373 kb on - strand at 499.393 kb on + strand at 499.393 kb on + strand at 499.393 kb on + strand at 499.393 kb on + strand at 499.393 kb on + strand at 499.394 kb on - strand at 499.394 kb on - strand at 499.394 kb on - strand at 499.394 kb on - strand at 499.394 kb on - strand at 499.394 kb on - strand at 499.394 kb on - strand at 499.434 kb on + strand at 499.434 kb on + strand at 499.434 kb on + strand at 499.441 kb on + strand at 499.442 kb on - strand at 499.443 kb on + strand at 499.443 kb on + strand at 499.443 kb on + strand at 499.445 kb on + strand at 499.445 kb on + strand at 499.445 kb on + strand at 499.446 kb on - strand at 499.446 kb on - strand at 499.446 kb on - strand at 499.523 kb on + strand at 499.547 kb on + strand, within IAI47_21215 at 499.548 kb on - strand, within IAI47_21215 at 499.558 kb on + strand, within IAI47_21215 at 499.558 kb on + strand, within IAI47_21215 at 499.558 kb on + strand, within IAI47_21215 at 499.559 kb on - strand, within IAI47_21215 at 499.559 kb on - strand, within IAI47_21215 at 499.559 kb on - strand, within IAI47_21215 at 499.568 kb on + strand, within IAI47_21215 at 499.568 kb on + strand, within IAI47_21215 at 499.568 kb on + strand, within IAI47_21215 at 499.568 kb on + strand, within IAI47_21215 at 499.569 kb on - strand, within IAI47_21215 at 499.590 kb on - strand, within IAI47_21215 at 499.699 kb on + strand, within IAI47_21215 at 499.726 kb on + strand, within IAI47_21215 at 499.733 kb on + strand, within IAI47_21215 at 499.733 kb on + strand, within IAI47_21215 at 499.734 kb on - strand, within IAI47_21215 at 499.754 kb on + strand, within IAI47_21215 at 499.754 kb on + strand, within IAI47_21215
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 497,288 + IAI47_21205 0.56 -0.3 497,308 + IAI47_21205 0.57 +0.1 497,309 - IAI47_21205 0.57 +1.2 497,321 + IAI47_21205 0.58 -1.1 497,321 + IAI47_21205 0.58 -0.6 497,349 + IAI47_21205 0.59 +0.3 497,349 + IAI47_21205 0.59 -2.2 497,349 + IAI47_21205 0.59 +0.5 497,349 + IAI47_21205 0.59 -0.6 497,350 - IAI47_21205 0.59 -1.0 497,394 - IAI47_21205 0.61 -1.6 497,412 + IAI47_21205 0.62 -2.1 497,413 - IAI47_21205 0.62 +1.0 497,413 - IAI47_21205 0.62 -0.3 497,413 - IAI47_21205 0.62 -1.1 497,413 - IAI47_21205 0.62 -0.3 497,439 + IAI47_21205 0.63 +2.4 497,440 - IAI47_21205 0.63 -2.7 497,440 - IAI47_21205 0.63 -0.9 497,440 - IAI47_21205 0.63 +0.1 497,505 + IAI47_21205 0.66 -0.2 497,505 + IAI47_21205 0.66 +0.6 497,505 + IAI47_21205 0.66 -0.7 497,506 - IAI47_21205 0.66 +0.8 497,506 - IAI47_21205 0.66 -0.6 497,506 - IAI47_21205 0.66 -2.7 497,506 - IAI47_21205 0.66 +1.2 497,576 - IAI47_21205 0.69 -0.4 497,738 + IAI47_21205 0.77 -1.1 497,752 + IAI47_21205 0.77 -0.9 497,752 + IAI47_21205 0.77 -0.2 497,753 - IAI47_21205 0.77 +3.5 497,765 + IAI47_21205 0.78 +1.7 497,765 + IAI47_21205 0.78 -0.7 497,765 + IAI47_21205 0.78 +0.7 497,765 + IAI47_21205 0.78 -2.2 497,766 - IAI47_21205 0.78 -1.3 497,766 - IAI47_21205 0.78 -0.9 497,766 - IAI47_21205 0.78 +0.3 497,766 - IAI47_21205 0.78 -1.1 497,779 + IAI47_21205 0.78 -2.7 497,779 + IAI47_21205 0.78 +1.7 497,779 + IAI47_21205 0.78 +0.1 497,779 + IAI47_21205 0.78 +4.0 497,779 + IAI47_21205 0.78 -1.1 497,780 - IAI47_21205 0.78 -2.0 497,780 - IAI47_21205 0.78 +0.4 497,780 - IAI47_21205 0.78 +2.1 497,780 - IAI47_21205 0.78 +0.6 497,780 - IAI47_21205 0.78 -1.1 497,780 - IAI47_21205 0.78 +0.4 497,786 + IAI47_21205 0.79 +1.0 497,822 + IAI47_21205 0.80 -1.9 497,887 - IAI47_21205 0.83 +2.7 497,913 - IAI47_21205 0.84 -2.3 497,913 - IAI47_21205 0.84 -0.8 497,913 - IAI47_21205 0.84 +0.2 498,056 - -2.3 498,087 + -0.6 498,098 + +1.3 498,099 - +2.1 498,106 + -0.7 498,106 + +3.8 498,106 + +3.1 498,107 - +0.7 498,122 - +0.7 498,122 - +1.7 498,122 - -0.5 498,122 - -0.1 498,124 + +0.9 498,124 + -1.8 498,124 + -1.1 498,124 + -2.9 498,124 + -0.2 498,125 - +2.4 498,253 + -0.2 498,253 + +2.3 498,282 + +0.2 498,283 - -0.8 498,283 - +3.1 498,283 - +1.7 498,283 - +0.4 498,285 + +0.2 498,286 - -0.9 498,286 - -0.7 498,363 + IAI47_21210 0.22 -2.4 498,364 - IAI47_21210 0.22 +0.0 498,407 + IAI47_21210 0.30 +0.0 498,407 + IAI47_21210 0.30 +2.5 498,407 + IAI47_21210 0.30 -0.0 498,407 + IAI47_21210 0.30 +2.3 498,407 + IAI47_21210 0.30 +0.9 498,407 + IAI47_21210 0.30 -0.9 498,408 - IAI47_21210 0.30 +0.1 498,408 - IAI47_21210 0.30 +1.0 498,408 - IAI47_21210 0.30 -1.0 498,408 - IAI47_21210 0.30 -0.5 498,422 + IAI47_21210 0.33 +3.4 498,422 + IAI47_21210 0.33 +1.2 498,423 - IAI47_21210 0.33 -0.9 498,455 + IAI47_21210 0.39 +3.3 498,456 - IAI47_21210 0.39 -1.5 498,456 - IAI47_21210 0.39 -0.7 498,456 - IAI47_21210 0.39 +0.9 498,456 - IAI47_21210 0.39 +4.8 498,456 - IAI47_21210 0.39 +1.3 498,456 - IAI47_21210 0.39 -1.8 498,609 - IAI47_21210 0.68 -1.3 498,609 - IAI47_21210 0.68 -2.1 498,609 - IAI47_21210 0.68 +0.5 498,609 - IAI47_21210 0.68 -0.3 498,609 - IAI47_21210 0.68 +1.4 498,620 + IAI47_21210 0.70 +1.2 498,621 - IAI47_21210 0.70 +1.9 498,621 - IAI47_21210 0.70 -3.8 498,621 - IAI47_21210 0.70 +0.1 498,621 - IAI47_21210 0.70 -1.8 498,644 - IAI47_21210 0.75 +1.6 498,650 + IAI47_21210 0.76 -0.1 498,650 + IAI47_21210 0.76 +0.3 498,650 + IAI47_21210 0.76 +1.1 498,651 - IAI47_21210 0.76 -0.1 498,760 + +0.9 498,761 - -0.8 498,776 + +0.4 498,776 + -0.2 498,777 - +1.4 498,777 - +0.3 498,783 - +0.7 498,793 + -0.7 498,836 + +0.2 498,836 + -2.2 498,836 + +2.0 498,837 - -1.7 498,846 + +1.5 498,846 + +0.2 498,875 + -2.7 498,876 - +0.5 498,876 - -2.0 498,876 - +0.9 498,958 + -0.4 498,958 + -0.1 498,958 + -2.1 498,958 + +0.4 498,958 + +0.7 498,958 + +0.5 498,958 + -0.8 498,959 - +1.4 498,959 - +0.2 498,959 - -2.0 498,960 + +1.9 498,960 + +0.7 498,960 + +0.5 498,960 + -0.3 498,960 + +1.1 498,960 + -0.3 498,960 + +1.1 498,960 + +1.1 498,960 + +0.7 498,960 + +0.1 498,960 + -0.1 498,961 - +1.1 498,961 - -1.1 498,961 - +0.1 498,961 - +0.5 498,961 - -0.9 498,961 - -1.5 498,961 - +1.9 498,961 - +0.5 498,961 - +2.2 498,961 - -2.0 498,961 - -1.2 498,961 - +1.9 498,961 - -0.1 498,961 - -1.6 498,988 - +1.7 499,025 + -1.1 499,025 + +0.7 499,025 + -1.3 499,045 + -0.5 499,093 + +0.1 499,124 + -0.6 499,124 + -2.0 499,124 + -1.5 499,124 + +0.3 499,124 + +4.0 499,125 - +0.1 499,125 - -0.1 499,153 + +0.2 499,153 + +1.1 499,154 - +0.9 499,154 - -0.7 499,154 - +1.2 499,158 + -0.1 499,158 + -0.3 499,158 + -2.9 499,158 + -1.3 499,158 + +0.4 499,158 + -2.8 499,159 - +0.4 499,180 + -0.3 499,188 + -1.3 499,188 + -1.1 499,189 - +0.6 499,201 + -0.1 499,202 - +0.6 499,202 - -0.2 499,241 + +1.0 499,241 + -3.2 499,241 + +0.2 499,252 + -2.6 499,252 + -1.8 499,253 - +0.0 499,283 + -0.9 499,284 - -0.3 499,284 - +1.9 499,284 - +0.7 499,341 + -0.9 499,342 - -0.1 499,342 - +0.6 499,348 + -0.2 499,348 + -0.3 499,348 + +0.1 499,370 + -0.1 499,370 + +0.4 499,371 - -0.1 499,372 + +0.6 499,372 + -0.3 499,372 + +2.2 499,372 + -1.7 499,372 + -2.2 499,373 - -0.1 499,373 - +0.2 499,373 - -0.7 499,393 + +0.5 499,393 + +1.3 499,393 + -1.5 499,393 + -1.1 499,393 + -1.8 499,394 - +1.4 499,394 - +0.0 499,394 - -0.6 499,394 - +0.3 499,394 - -1.8 499,394 - -0.2 499,394 - -0.9 499,434 + -1.5 499,434 + +1.7 499,434 + -1.1 499,441 + -1.2 499,442 - -0.9 499,443 + -1.0 499,443 + -0.7 499,443 + +0.4 499,445 + -0.0 499,445 + -0.0 499,445 + -0.8 499,446 - +0.1 499,446 - +1.9 499,446 - +3.0 499,523 + -0.7 499,547 + IAI47_21215 0.12 -2.7 499,548 - IAI47_21215 0.12 -0.1 499,558 + IAI47_21215 0.13 -0.3 499,558 + IAI47_21215 0.13 -1.1 499,558 + IAI47_21215 0.13 -0.9 499,559 - IAI47_21215 0.14 -1.0 499,559 - IAI47_21215 0.14 +0.2 499,559 - IAI47_21215 0.14 -2.0 499,568 + IAI47_21215 0.15 -1.3 499,568 + IAI47_21215 0.15 +0.6 499,568 + IAI47_21215 0.15 -0.7 499,568 + IAI47_21215 0.15 -2.2 499,569 - IAI47_21215 0.15 -0.7 499,590 - IAI47_21215 0.19 +1.1 499,699 + IAI47_21215 0.37 -1.3 499,726 + IAI47_21215 0.41 -0.1 499,733 + IAI47_21215 0.42 +3.1 499,733 + IAI47_21215 0.42 +1.2 499,734 - IAI47_21215 0.42 -0.7 499,754 + IAI47_21215 0.46 -0.8 499,754 + IAI47_21215 0.46 -3.1
Or see this region's nucleotide sequence