Strain Fitness in Pantoea sp. MT58 around IAI47_20265

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI47_20255 and IAI47_20260 are separated by 201 nucleotidesIAI47_20260 and IAI47_20265 are separated by 16 nucleotidesIAI47_20265 and IAI47_20270 overlap by 1 nucleotides IAI47_20255: IAI47_20255 - alpha/beta fold hydrolase, at 284,758 to 285,618 _20255 IAI47_20260: IAI47_20260 - GFA family protein, at 285,820 to 286,230 _20260 IAI47_20265: IAI47_20265 - DUF1641 domain-containing protein, at 286,247 to 286,732 _20265 IAI47_20270: IAI47_20270 - formate dehydrogenase subunit alpha, at 286,732 to 289,704 _20270 Position (kb) 286 287Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 285.310 kb on + strand, within IAI47_20255at 285.316 kb on + strand, within IAI47_20255at 285.316 kb on + strand, within IAI47_20255at 285.316 kb on + strand, within IAI47_20255at 285.316 kb on + strand, within IAI47_20255at 285.316 kb on + strand, within IAI47_20255at 285.316 kb on + strand, within IAI47_20255at 285.317 kb on - strand, within IAI47_20255at 285.317 kb on - strand, within IAI47_20255at 285.317 kb on - strand, within IAI47_20255at 285.317 kb on - strand, within IAI47_20255at 285.317 kb on - strand, within IAI47_20255at 285.372 kb on + strand, within IAI47_20255at 285.372 kb on + strand, within IAI47_20255at 285.437 kb on + strand, within IAI47_20255at 285.438 kb on - strand, within IAI47_20255at 285.438 kb on - strand, within IAI47_20255at 285.472 kb on - strand, within IAI47_20255at 285.534 kb on + strandat 285.535 kb on - strandat 285.606 kb on + strandat 285.606 kb on + strandat 285.607 kb on - strandat 285.607 kb on - strandat 285.610 kb on + strandat 285.610 kb on + strandat 285.610 kb on + strandat 285.611 kb on - strandat 285.611 kb on - strandat 285.644 kb on + strandat 285.645 kb on - strandat 285.645 kb on - strandat 285.664 kb on + strandat 285.665 kb on - strandat 285.693 kb on - strandat 285.696 kb on + strandat 285.697 kb on - strandat 285.697 kb on - strandat 285.697 kb on - strandat 285.761 kb on + strandat 285.804 kb on + strandat 285.865 kb on + strand, within IAI47_20260at 285.865 kb on + strand, within IAI47_20260at 285.865 kb on + strand, within IAI47_20260at 285.865 kb on + strand, within IAI47_20260at 285.865 kb on + strandat 285.865 kb on + strand, within IAI47_20260at 285.865 kb on + strand, within IAI47_20260at 285.866 kb on - strand, within IAI47_20260at 285.866 kb on - strand, within IAI47_20260at 285.866 kb on - strand, within IAI47_20260at 285.866 kb on - strand, within IAI47_20260at 285.866 kb on - strand, within IAI47_20260at 285.866 kb on - strand, within IAI47_20260at 285.866 kb on - strand, within IAI47_20260at 285.867 kb on + strand, within IAI47_20260at 285.868 kb on - strand, within IAI47_20260at 285.878 kb on + strand, within IAI47_20260at 285.891 kb on + strand, within IAI47_20260at 285.942 kb on - strand, within IAI47_20260at 285.998 kb on - strand, within IAI47_20260at 285.998 kb on - strand, within IAI47_20260at 286.009 kb on - strand, within IAI47_20260at 286.009 kb on - strand, within IAI47_20260at 286.027 kb on + strand, within IAI47_20260at 286.028 kb on - strand, within IAI47_20260at 286.028 kb on - strand, within IAI47_20260at 286.028 kb on - strand, within IAI47_20260at 286.028 kb on - strand, within IAI47_20260at 286.028 kb on - strand, within IAI47_20260at 286.028 kb on - strand, within IAI47_20260at 286.052 kb on - strand, within IAI47_20260at 286.052 kb on - strand, within IAI47_20260at 286.054 kb on - strand, within IAI47_20260at 286.096 kb on - strand, within IAI47_20260at 286.096 kb on - strand, within IAI47_20260at 286.158 kb on + strand, within IAI47_20260at 286.211 kb on - strandat 286.211 kb on - strandat 286.211 kb on - strandat 286.211 kb on - strandat 286.211 kb on - strandat 286.211 kb on - strandat 286.211 kb on - strandat 286.211 kb on - strandat 286.212 kb on + strandat 286.213 kb on - strandat 286.245 kb on + strandat 286.245 kb on + strandat 286.245 kb on + strandat 286.245 kb on + strandat 286.245 kb on + strandat 286.245 kb on + strandat 286.245 kb on + strandat 286.245 kb on + strandat 286.245 kb on + strandat 286.248 kb on + strandat 286.248 kb on + strandat 286.248 kb on + strandat 286.249 kb on - strandat 286.249 kb on - strandat 286.249 kb on - strandat 286.372 kb on + strand, within IAI47_20265at 286.372 kb on + strand, within IAI47_20265at 286.372 kb on + strand, within IAI47_20265at 286.373 kb on - strand, within IAI47_20265at 286.373 kb on - strand, within IAI47_20265at 286.373 kb on - strand, within IAI47_20265at 286.373 kb on - strand, within IAI47_20265at 286.376 kb on + strand, within IAI47_20265at 286.597 kb on + strand, within IAI47_20265at 286.597 kb on + strand, within IAI47_20265at 286.598 kb on - strand, within IAI47_20265at 286.714 kb on - strandat 286.714 kb on - strandat 286.864 kb on - strandat 286.913 kb on + strandat 286.913 kb on + strandat 286.914 kb on - strandat 286.914 kb on - strandat 286.914 kb on - strandat 286.914 kb on - strandat 286.914 kb on - strandat 286.914 kb on - strandat 286.963 kb on - strandat 286.974 kb on + strandat 286.974 kb on + strandat 286.975 kb on - strandat 287.022 kb on + strandat 287.022 kb on + strandat 287.025 kb on + strandat 287.025 kb on + strandat 287.026 kb on - strandat 287.026 kb on - strandat 287.026 kb on - strandat 287.026 kb on - strandat 287.062 kb on - strand, within IAI47_20270at 287.133 kb on + strand, within IAI47_20270at 287.134 kb on - strand, within IAI47_20270at 287.225 kb on + strand, within IAI47_20270at 287.225 kb on + strand, within IAI47_20270at 287.284 kb on - strand, within IAI47_20270at 287.310 kb on + strand, within IAI47_20270at 287.310 kb on + strand, within IAI47_20270at 287.310 kb on + strand, within IAI47_20270at 287.311 kb on - strand, within IAI47_20270at 287.311 kb on - strand, within IAI47_20270at 287.311 kb on - strand, within IAI47_20270at 287.311 kb on - strand, within IAI47_20270at 287.311 kb on - strand, within IAI47_20270at 287.313 kb on - strand, within IAI47_20270at 287.313 kb on - strand, within IAI47_20270at 287.313 kb on - strand, within IAI47_20270at 287.384 kb on + strand, within IAI47_20270at 287.385 kb on - strand, within IAI47_20270at 287.430 kb on + strand, within IAI47_20270at 287.538 kb on + strand, within IAI47_20270at 287.539 kb on - strand, within IAI47_20270at 287.640 kb on + strand, within IAI47_20270at 287.640 kb on + strand, within IAI47_20270at 287.640 kb on + strand, within IAI47_20270at 287.640 kb on + strand, within IAI47_20270at 287.640 kb on + strand, within IAI47_20270at 287.640 kb on + strand, within IAI47_20270at 287.640 kb on + strand, within IAI47_20270at 287.640 kb on + strand, within IAI47_20270at 287.641 kb on - strand, within IAI47_20270at 287.641 kb on - strand, within IAI47_20270at 287.661 kb on + strand, within IAI47_20270at 287.662 kb on - strand, within IAI47_20270

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
remove
285,310 + IAI47_20255 0.64 -0.5
285,316 + IAI47_20255 0.65 +0.3
285,316 + IAI47_20255 0.65 -1.5
285,316 + IAI47_20255 0.65 -1.0
285,316 + IAI47_20255 0.65 -1.2
285,316 + IAI47_20255 0.65 +1.3
285,316 + IAI47_20255 0.65 +0.8
285,317 - IAI47_20255 0.65 -1.1
285,317 - IAI47_20255 0.65 +1.5
285,317 - IAI47_20255 0.65 -0.9
285,317 - IAI47_20255 0.65 +0.9
285,317 - IAI47_20255 0.65 +0.3
285,372 + IAI47_20255 0.71 -2.5
285,372 + IAI47_20255 0.71 -2.6
285,437 + IAI47_20255 0.79 -0.8
285,438 - IAI47_20255 0.79 -1.5
285,438 - IAI47_20255 0.79 -0.9
285,472 - IAI47_20255 0.83 +0.4
285,534 + +0.5
285,535 - +0.9
285,606 + +1.2
285,606 + -1.8
285,607 - +0.8
285,607 - +1.7
285,610 + +3.0
285,610 + -0.3
285,610 + -1.3
285,611 - -2.0
285,611 - +0.2
285,644 + +1.0
285,645 - -0.2
285,645 - -0.3
285,664 + -0.2
285,665 - -0.1
285,693 - +0.7
285,696 + +0.9
285,697 - -0.7
285,697 - +1.0
285,697 - -0.7
285,761 + -2.0
285,804 + -0.3
285,865 + IAI47_20260 0.11 +0.1
285,865 + IAI47_20260 0.11 +0.3
285,865 + IAI47_20260 0.11 -2.5
285,865 + IAI47_20260 0.11 +0.5
285,865 + +1.7
285,865 + IAI47_20260 0.11 +2.7
285,865 + IAI47_20260 0.11 -2.2
285,866 - IAI47_20260 0.11 +0.1
285,866 - IAI47_20260 0.11 +0.5
285,866 - IAI47_20260 0.11 +0.1
285,866 - IAI47_20260 0.11 +1.0
285,866 - IAI47_20260 0.11 +0.3
285,866 - IAI47_20260 0.11 +0.1
285,866 - IAI47_20260 0.11 +0.3
285,867 + IAI47_20260 0.11 +1.8
285,868 - IAI47_20260 0.12 -0.1
285,878 + IAI47_20260 0.14 +3.1
285,891 + IAI47_20260 0.17 -1.3
285,942 - IAI47_20260 0.30 +0.7
285,998 - IAI47_20260 0.43 -0.3
285,998 - IAI47_20260 0.43 -2.7
286,009 - IAI47_20260 0.46 -2.1
286,009 - IAI47_20260 0.46 +1.1
286,027 + IAI47_20260 0.50 -3.1
286,028 - IAI47_20260 0.51 -1.8
286,028 - IAI47_20260 0.51 +1.4
286,028 - IAI47_20260 0.51 +1.8
286,028 - IAI47_20260 0.51 +0.3
286,028 - IAI47_20260 0.51 +1.1
286,028 - IAI47_20260 0.51 +1.2
286,052 - IAI47_20260 0.56 -1.1
286,052 - IAI47_20260 0.56 +0.5
286,054 - IAI47_20260 0.57 -1.8
286,096 - IAI47_20260 0.67 -0.0
286,096 - IAI47_20260 0.67 -2.9
286,158 + IAI47_20260 0.82 +2.2
286,211 - -0.9
286,211 - +0.3
286,211 - +0.4
286,211 - +2.1
286,211 - -2.0
286,211 - -1.1
286,211 - +1.4
286,211 - +1.4
286,212 + -0.3
286,213 - +1.7
286,245 + +0.3
286,245 + +1.7
286,245 + +0.4
286,245 + -2.0
286,245 + +3.2
286,245 + +0.4
286,245 + -0.3
286,245 + -2.6
286,245 + +1.1
286,248 + -1.3
286,248 + +1.0
286,248 + -2.5
286,249 - +2.2
286,249 - -1.3
286,249 - -1.1
286,372 + IAI47_20265 0.26 -1.0
286,372 + IAI47_20265 0.26 +0.5
286,372 + IAI47_20265 0.26 -3.3
286,373 - IAI47_20265 0.26 +0.1
286,373 - IAI47_20265 0.26 -1.3
286,373 - IAI47_20265 0.26 -0.5
286,373 - IAI47_20265 0.26 +0.2
286,376 + IAI47_20265 0.27 +0.3
286,597 + IAI47_20265 0.72 -0.7
286,597 + IAI47_20265 0.72 -1.0
286,598 - IAI47_20265 0.72 -2.6
286,714 - -0.6
286,714 - +1.4
286,864 - +0.5
286,913 + -1.3
286,913 + -2.1
286,914 - -2.0
286,914 - -0.1
286,914 - +0.2
286,914 - +3.2
286,914 - -0.2
286,914 - +0.1
286,963 - -0.9
286,974 + -0.8
286,974 + +2.3
286,975 - -2.3
287,022 + +1.4
287,022 + -1.3
287,025 + -1.3
287,025 + +0.5
287,026 - +1.3
287,026 - -1.1
287,026 - -0.9
287,026 - -1.1
287,062 - IAI47_20270 0.11 +0.7
287,133 + IAI47_20270 0.13 -1.1
287,134 - IAI47_20270 0.14 -0.3
287,225 + IAI47_20270 0.17 -0.7
287,225 + IAI47_20270 0.17 -0.3
287,284 - IAI47_20270 0.19 +0.7
287,310 + IAI47_20270 0.19 -1.1
287,310 + IAI47_20270 0.19 +0.2
287,310 + IAI47_20270 0.19 -1.8
287,311 - IAI47_20270 0.19 -2.1
287,311 - IAI47_20270 0.19 -0.1
287,311 - IAI47_20270 0.19 -0.6
287,311 - IAI47_20270 0.19 -2.7
287,311 - IAI47_20270 0.19 +1.8
287,313 - IAI47_20270 0.20 +0.9
287,313 - IAI47_20270 0.20 -0.5
287,313 - IAI47_20270 0.20 -2.0
287,384 + IAI47_20270 0.22 +2.9
287,385 - IAI47_20270 0.22 +1.4
287,430 + IAI47_20270 0.23 -1.1
287,538 + IAI47_20270 0.27 -0.2
287,539 - IAI47_20270 0.27 -0.0
287,640 + IAI47_20270 0.31 -0.9
287,640 + IAI47_20270 0.31 -0.7
287,640 + IAI47_20270 0.31 -0.1
287,640 + IAI47_20270 0.31 +2.0
287,640 + IAI47_20270 0.31 +0.7
287,640 + IAI47_20270 0.31 +0.4
287,640 + IAI47_20270 0.31 +0.5
287,640 + IAI47_20270 0.31 +0.4
287,641 - IAI47_20270 0.31 +1.8
287,641 - IAI47_20270 0.31 -1.6
287,661 + IAI47_20270 0.31 -0.3
287,662 - IAI47_20270 0.31 +0.6

Or see this region's nucleotide sequence