Strain Fitness in Pantoea sp. MT58 around IAI47_19660

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
160,997	-		IAI47_19650	0.71	-1.3
160,997	-		IAI47_19650	0.71	-0.1
161,072	+		IAI47_19650	0.82	-1.0
161,160	-				+1.5
161,160	-				+0.6
161,160	-				+1.1
161,160	-				-2.5
161,206	+				+1.9
161,207	-				+0.7
161,224	+				-2.6
161,225	-				-1.0
161,229	+				+0.4
161,230	-				-1.3
161,230	-				-1.6
161,244	+				-0.8
161,244	+				+2.1
161,244	+				+0.3
161,245	-				+2.2
161,248	+				+0.6
161,249	-				-1.6
161,299	-				-1.6
161,309	-				-0.5
161,423	+				+2.1
161,423	+				+1.6
161,423	+				-0.3
161,424	-				-1.0
161,425	+				+0.6
161,425	+				-1.6
161,425	+				+0.5
161,425	+				+0.0
161,425	+				+2.9
161,425	+				-0.1
161,425	+				+1.8
161,425	+				+0.9
161,426	-				-0.7
161,426	-				+0.0
161,426	-				-2.0
161,426	-				+1.4
161,426	-				-0.7
161,426	-				+3.1
161,426	-				-0.4
161,433	+				-1.2
161,433	+				+1.2
161,433	+				-1.4
161,433	+				-1.7
161,434	-				-0.4
161,434	-				+0.0
161,434	-				-1.4
161,434	-				+0.0
161,434	-				+0.2
161,434	-				-1.0
161,535	+				-1.0
161,572	+		IAI47_19655	0.17	-0.4
161,572	+		IAI47_19655	0.17	+0.8
161,587	+		IAI47_19655	0.24	+0.1
161,587	+		IAI47_19655	0.24	+1.1
161,588	-		IAI47_19655	0.24	+1.6
161,588	-		IAI47_19655	0.24	-3.0
161,593	+		IAI47_19655	0.26	-1.3
161,593	+		IAI47_19655	0.26	+1.4
161,594	-		IAI47_19655	0.27	-1.8
161,600	+		IAI47_19655	0.29	-0.1
161,600	+		IAI47_19655	0.29	-1.8
161,601	-		IAI47_19655	0.30	-2.5
161,611	+		IAI47_19655	0.34	-2.7
161,638	-		IAI47_19655	0.46	+1.2
161,638	-		IAI47_19655	0.46	-0.7
161,638	-		IAI47_19655	0.46	+0.7
161,699	-		IAI47_19655	0.73	+1.6
161,699	-		IAI47_19655	0.73	+0.6
161,721	-		IAI47_19655	0.83	-1.8
161,721	-		IAI47_19655	0.83	-1.7
161,721	-		IAI47_19655	0.83	-1.2
161,723	+		IAI47_19655	0.84	-0.3
161,723	+		IAI47_19655	0.84	+0.0
161,723	+		IAI47_19655	0.84	-2.7
161,753	+				-0.6
161,753	+				+0.2
161,754	-				-0.7
161,754	-				-0.8
161,754	-				-2.2
161,754	-				+3.1
161,754	-				+0.1
161,779	-				-0.7
161,789	+				+0.2
161,789	+				-1.0
161,789	+				+0.6
161,789	+				-0.5
161,790	-				+1.2
161,790	-				+1.1
161,795	+				-1.6
161,795	+				+1.9
161,811	+				+1.2
161,812	-				-2.6
161,812	-				+2.4
161,816	+				-1.4
161,816	+				-2.6
161,816	+				+0.0
161,817	-				+0.6
161,817	-				-0.2
161,817	-				+0.1
161,817	-				-0.3
161,820	-				+1.4
161,820	-				-0.6
161,822	+				+2.4
161,823	-				+1.6
161,850	+				-1.0
161,850	+				+0.9
161,850	+				+1.3
161,851	-				+2.0
161,856	+				-0.6
161,857	-				+2.2
161,857	-				+0.4
161,868	+				+1.5
161,868	+				-2.4
161,868	+				+0.2
161,869	-				+0.3
161,869	-				+0.8
161,869	-				-0.2
161,869	-				+0.0
161,897	+				+2.1
161,897	+				+0.7
161,897	+				-1.0
161,897	+				-0.7
161,898	-				-2.1
161,898	-				-1.2
161,913	+				-1.0
161,913	+				+1.4
161,913	+				+1.3
161,950	+				-0.3
161,964	+				-1.0
161,987	+				+4.3
161,988	-				+0.9
161,996	+				+0.0
161,996	+				-0.4
161,997	-				-1.4
161,997	-				-2.0
162,057	+		IAI47_19660	0.22	-1.0
162,078	+		IAI47_19660	0.29	-0.4
162,078	+		IAI47_19660	0.29	+0.2
162,107	+		IAI47_19660	0.39	+1.2
162,108	-		IAI47_19660	0.39	-0.4
162,108	-		IAI47_19660	0.39	+0.3
162,110	+		IAI47_19660	0.39	-1.0
162,110	+		IAI47_19660	0.39	+1.9
162,110	+		IAI47_19660	0.39	-0.4
162,111	-		IAI47_19660	0.40	-1.6
162,111	-		IAI47_19660	0.40	+0.6
162,111	-		IAI47_19660	0.40	+0.2
162,111	-		IAI47_19660	0.40	-0.8
162,111	-		IAI47_19660	0.40	-1.2
162,129	-		IAI47_19660	0.46	-0.7
162,152	+		IAI47_19660	0.53	-1.3
162,153	-		IAI47_19660	0.53	-0.2
162,161	+		IAI47_19660	0.56	-1.4
162,215	+		IAI47_19660	0.73	-0.4
162,215	+		IAI47_19660	0.73	+0.0
162,294	+				-2.1
162,294	+				+1.1
162,295	-				-2.0
162,365	-				+1.1
162,369	+				-0.4
162,370	-				-1.8
162,373	+				-3.2
162,374	-				+2.0
162,374	-				+2.0
162,374	-				+2.3
162,374	-				+0.4
162,374	-				+2.2
162,383	-				+0.6
162,396	-				+2.6
162,404	+				+1.5
162,404	+				+0.6
162,405	-				-1.2
162,410	+				+0.9
162,421	+				-1.0
162,443	+				-1.0
162,455	+				-0.7
162,456	-				-1.0
162,456	-				-1.6
162,467	-				-1.2
162,467	-				-0.4
162,491	+				-0.4
162,491	+				+1.9
162,492	-				-0.7
162,494	+				+0.5
162,494	+				+0.1
162,495	-				-2.0
162,510	+				-0.4
162,510	+				+1.5
162,510	+				-2.4
162,511	-				+1.4
162,511	-				-0.4
162,511	-				+1.6
162,511	-				-2.4
162,511	-				-0.2
162,554	-				-0.1
162,554	-				-2.2
162,554	-				+0.8
162,554	-				-0.3
162,572	-				+1.2
162,642	+		IAI47_19665	0.14	+1.2
162,650	-		IAI47_19665	0.15	+3.1
162,652	+		IAI47_19665	0.15	-0.0
162,652	+		IAI47_19665	0.15	+1.1
162,652	+		IAI47_19665	0.15	+0.8
162,652	+		IAI47_19665	0.15	-0.4
162,652	+		IAI47_19665	0.15	-0.3
162,653	-		IAI47_19665	0.15	+1.6
162,653	-		IAI47_19665	0.15	-0.4
162,653	-		IAI47_19665	0.15	+0.2
162,653	-		IAI47_19665	0.15	-0.6
162,672	-		IAI47_19665	0.17	-1.3
162,799	+		IAI47_19665	0.29	+2.3
162,799	+		IAI47_19665	0.29	-1.8
162,799	+		IAI47_19665	0.29	+0.6
162,799	+		IAI47_19665	0.29	-1.8
162,800	-		IAI47_19665	0.29	+1.9
162,800	-		IAI47_19665	0.29	-0.4
162,800	-		IAI47_19665	0.29	+0.9
162,800	-		IAI47_19665	0.29	+1.3
162,800	-		IAI47_19665	0.29	-2.6
162,803	-		IAI47_19665	0.29	-0.6
162,803	-		IAI47_19665	0.29	+0.9
162,803	-		IAI47_19665	0.29	+0.1
162,867	+		IAI47_19665	0.35	-2.1
162,867	+		IAI47_19665	0.35	+0.0
162,884	-		IAI47_19665	0.36	+0.6
162,884	-		IAI47_19665	0.36	-2.3
162,928	+		IAI47_19665	0.40	+4.3
162,929	-		IAI47_19665	0.41	+1.6
162,977	+		IAI47_19665	0.45	+1.2
162,978	-		IAI47_19665	0.45	-1.6
163,006	+		IAI47_19665	0.48	-0.7
163,007	-		IAI47_19665	0.48	+1.4
163,007	-		IAI47_19665	0.48	+1.6
163,007	-		IAI47_19665	0.48	+2.7
163,007	-		IAI47_19665	0.48	+1.1
163,007	-		IAI47_19665	0.48	-0.4
163,051	+		IAI47_19665	0.52	+1.6
163,052	-		IAI47_19665	0.52	-3.0
163,052	-		IAI47_19665	0.52	+0.6
163,052	-		IAI47_19665	0.52	+2.4
163,052	-		IAI47_19665	0.52	+1.2
163,052	-		IAI47_19665	0.52	+4.3
163,147	+		IAI47_19665	0.60	-0.8
163,158	+		IAI47_19665	0.61	-2.0
163,255	+		IAI47_19665	0.70	+2.3
163,256	-		IAI47_19665	0.70	-1.4
163,256	-		IAI47_19665	0.70	-0.7
163,258	+		IAI47_19665	0.71	-0.5
163,259	-		IAI47_19665	0.71	-0.7
163,259	-		IAI47_19665	0.71	-1.6
163,276	+		IAI47_19665	0.72	-1.6
163,276	+		IAI47_19665	0.72	+0.5
163,276	+		IAI47_19665	0.72	-2.1
163,276	+		IAI47_19665	0.72	-1.1