Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19470 and IAI47_19475 are separated by 76 nucleotides IAI47_19475 and IAI47_19480 are separated by 110 nucleotides
IAI47_19470: IAI47_19470 - GABA permease, at 122,415 to 123,830
_19470
IAI47_19475: IAI47_19475 - 4-aminobutyrate--2-oxoglutarate transaminase, at 123,907 to 125,193
_19475
IAI47_19480: IAI47_19480 - PLP-dependent aminotransferase family protein, at 125,304 to 126,794
_19480
Position (kb) 123
124
125
126 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 122.907 kb on - strand, within IAI47_19470 at 122.907 kb on - strand, within IAI47_19470 at 122.907 kb on - strand, within IAI47_19470 at 122.907 kb on - strand, within IAI47_19470 at 122.908 kb on + strand, within IAI47_19470 at 122.908 kb on + strand, within IAI47_19470 at 122.908 kb on + strand, within IAI47_19470 at 122.909 kb on - strand, within IAI47_19470 at 122.909 kb on - strand, within IAI47_19470 at 122.909 kb on - strand, within IAI47_19470 at 122.909 kb on - strand, within IAI47_19470 at 122.909 kb on - strand, within IAI47_19470 at 122.994 kb on + strand, within IAI47_19470 at 122.995 kb on - strand, within IAI47_19470 at 122.995 kb on - strand, within IAI47_19470 at 123.045 kb on + strand, within IAI47_19470 at 123.079 kb on + strand, within IAI47_19470 at 123.079 kb on + strand, within IAI47_19470 at 123.080 kb on - strand, within IAI47_19470 at 123.092 kb on + strand, within IAI47_19470 at 123.101 kb on + strand, within IAI47_19470 at 123.159 kb on + strand, within IAI47_19470 at 123.183 kb on - strand, within IAI47_19470 at 123.183 kb on - strand, within IAI47_19470 at 123.239 kb on + strand, within IAI47_19470 at 123.256 kb on + strand, within IAI47_19470 at 123.256 kb on + strand, within IAI47_19470 at 123.257 kb on - strand, within IAI47_19470 at 123.281 kb on + strand, within IAI47_19470 at 123.282 kb on - strand, within IAI47_19470 at 123.282 kb on - strand, within IAI47_19470 at 123.303 kb on + strand, within IAI47_19470 at 123.414 kb on + strand, within IAI47_19470 at 123.420 kb on + strand, within IAI47_19470 at 123.420 kb on + strand, within IAI47_19470 at 123.420 kb on + strand, within IAI47_19470 at 123.421 kb on - strand, within IAI47_19470 at 123.421 kb on - strand, within IAI47_19470 at 123.421 kb on - strand, within IAI47_19470 at 123.421 kb on - strand, within IAI47_19470 at 123.425 kb on + strand, within IAI47_19470 at 123.510 kb on + strand, within IAI47_19470 at 123.511 kb on - strand, within IAI47_19470 at 123.533 kb on - strand, within IAI47_19470 at 123.549 kb on - strand, within IAI47_19470 at 123.575 kb on + strand, within IAI47_19470 at 123.575 kb on + strand, within IAI47_19470 at 123.575 kb on + strand, within IAI47_19470 at 123.576 kb on - strand, within IAI47_19470 at 123.576 kb on - strand, within IAI47_19470 at 123.576 kb on - strand, within IAI47_19470 at 123.576 kb on - strand, within IAI47_19470 at 123.583 kb on + strand, within IAI47_19470 at 123.583 kb on + strand, within IAI47_19470 at 123.583 kb on + strand, within IAI47_19470 at 123.583 kb on + strand, within IAI47_19470 at 123.584 kb on - strand, within IAI47_19470 at 123.584 kb on - strand, within IAI47_19470 at 123.584 kb on - strand, within IAI47_19470 at 123.584 kb on - strand, within IAI47_19470 at 123.584 kb on - strand, within IAI47_19470 at 123.584 kb on - strand, within IAI47_19470 at 123.584 kb on - strand, within IAI47_19470 at 123.584 kb on - strand, within IAI47_19470 at 123.584 kb on - strand, within IAI47_19470 at 123.584 kb on - strand, within IAI47_19470 at 123.584 kb on - strand, within IAI47_19470 at 123.648 kb on + strand, within IAI47_19470 at 123.648 kb on + strand, within IAI47_19470 at 123.648 kb on + strand, within IAI47_19470 at 123.649 kb on - strand, within IAI47_19470 at 123.649 kb on - strand, within IAI47_19470 at 123.649 kb on - strand, within IAI47_19470 at 123.673 kb on + strand, within IAI47_19470 at 123.674 kb on - strand, within IAI47_19470 at 123.674 kb on - strand, within IAI47_19470 at 123.764 kb on + strand at 123.764 kb on + strand at 123.764 kb on + strand at 123.764 kb on + strand at 123.764 kb on + strand at 123.764 kb on + strand at 123.765 kb on - strand at 123.765 kb on - strand at 123.832 kb on + strand at 123.832 kb on + strand at 123.832 kb on + strand at 123.833 kb on - strand at 123.833 kb on - strand at 123.880 kb on + strand at 124.126 kb on + strand, within IAI47_19475 at 124.127 kb on - strand, within IAI47_19475 at 124.127 kb on - strand, within IAI47_19475 at 124.298 kb on + strand, within IAI47_19475 at 124.298 kb on + strand, within IAI47_19475 at 124.298 kb on + strand, within IAI47_19475 at 124.298 kb on + strand, within IAI47_19475 at 124.299 kb on - strand, within IAI47_19475 at 124.299 kb on - strand, within IAI47_19475 at 124.299 kb on - strand, within IAI47_19475 at 124.299 kb on - strand, within IAI47_19475 at 124.299 kb on - strand, within IAI47_19475 at 124.438 kb on + strand, within IAI47_19475 at 124.438 kb on + strand, within IAI47_19475 at 124.438 kb on + strand, within IAI47_19475 at 124.439 kb on - strand, within IAI47_19475 at 124.439 kb on - strand, within IAI47_19475 at 124.439 kb on - strand, within IAI47_19475 at 124.439 kb on - strand, within IAI47_19475 at 124.527 kb on + strand, within IAI47_19475 at 124.527 kb on + strand, within IAI47_19475 at 124.528 kb on - strand, within IAI47_19475 at 124.528 kb on - strand, within IAI47_19475 at 124.568 kb on - strand, within IAI47_19475 at 124.568 kb on - strand, within IAI47_19475 at 124.679 kb on + strand, within IAI47_19475 at 124.727 kb on + strand, within IAI47_19475 at 124.727 kb on + strand, within IAI47_19475 at 124.727 kb on + strand, within IAI47_19475 at 124.727 kb on + strand, within IAI47_19475 at 124.728 kb on - strand, within IAI47_19475 at 124.728 kb on - strand, within IAI47_19475 at 124.767 kb on + strand, within IAI47_19475 at 124.768 kb on - strand, within IAI47_19475 at 124.847 kb on - strand, within IAI47_19475 at 124.911 kb on + strand, within IAI47_19475 at 124.935 kb on - strand, within IAI47_19475 at 124.943 kb on + strand, within IAI47_19475 at 124.943 kb on + strand, within IAI47_19475 at 124.944 kb on - strand, within IAI47_19475 at 124.944 kb on - strand, within IAI47_19475 at 124.965 kb on + strand, within IAI47_19475 at 124.971 kb on + strand, within IAI47_19475 at 124.981 kb on + strand, within IAI47_19475 at 124.982 kb on - strand, within IAI47_19475 at 125.071 kb on - strand at 125.114 kb on + strand at 125.114 kb on + strand at 125.114 kb on + strand at 125.114 kb on + strand at 125.115 kb on - strand at 125.125 kb on + strand at 125.130 kb on + strand at 125.131 kb on - strand at 125.136 kb on + strand at 125.195 kb on + strand at 125.195 kb on + strand at 125.195 kb on + strand at 125.196 kb on - strand at 125.196 kb on - strand at 125.196 kb on - strand at 125.196 kb on - strand at 125.208 kb on + strand at 125.211 kb on + strand at 125.211 kb on + strand at 125.212 kb on - strand at 125.212 kb on - strand at 125.212 kb on - strand at 125.212 kb on - strand at 125.212 kb on - strand at 125.222 kb on - strand at 125.243 kb on + strand at 125.244 kb on - strand at 125.244 kb on - strand at 125.244 kb on - strand at 125.244 kb on - strand at 125.247 kb on + strand at 125.247 kb on + strand at 125.247 kb on + strand at 125.248 kb on - strand at 125.248 kb on - strand at 125.248 kb on - strand at 125.317 kb on - strand at 125.329 kb on + strand at 125.329 kb on + strand at 125.329 kb on + strand at 125.329 kb on + strand at 125.329 kb on + strand at 125.329 kb on + strand at 125.329 kb on + strand at 125.330 kb on - strand at 125.330 kb on - strand at 125.330 kb on - strand at 125.330 kb on - strand at 125.332 kb on + strand at 125.332 kb on + strand at 125.341 kb on + strand at 125.341 kb on + strand at 125.342 kb on - strand at 125.350 kb on + strand at 125.350 kb on + strand at 125.365 kb on + strand at 125.365 kb on + strand at 125.366 kb on - strand at 125.366 kb on - strand at 125.387 kb on + strand at 125.388 kb on - strand at 125.388 kb on - strand at 125.388 kb on - strand at 125.388 kb on - strand at 125.414 kb on - strand at 125.414 kb on - strand at 125.414 kb on - strand at 125.414 kb on - strand at 125.496 kb on + strand, within IAI47_19480 at 125.496 kb on + strand, within IAI47_19480 at 125.496 kb on + strand, within IAI47_19480 at 125.497 kb on - strand, within IAI47_19480 at 125.497 kb on - strand, within IAI47_19480 at 125.520 kb on + strand, within IAI47_19480 at 125.520 kb on + strand, within IAI47_19480 at 125.521 kb on - strand, within IAI47_19480 at 125.521 kb on - strand, within IAI47_19480 at 125.521 kb on - strand, within IAI47_19480 at 125.660 kb on - strand, within IAI47_19480 at 125.685 kb on + strand, within IAI47_19480 at 125.686 kb on - strand, within IAI47_19480 at 125.686 kb on - strand, within IAI47_19480 at 125.686 kb on - strand, within IAI47_19480 at 125.738 kb on + strand, within IAI47_19480 at 125.738 kb on + strand, within IAI47_19480 at 125.738 kb on + strand, within IAI47_19480 at 125.739 kb on - strand, within IAI47_19480 at 125.743 kb on + strand, within IAI47_19480 at 125.743 kb on + strand, within IAI47_19480 at 125.743 kb on + strand, within IAI47_19480 at 125.743 kb on + strand, within IAI47_19480 at 125.743 kb on + strand, within IAI47_19480 at 125.743 kb on + strand, within IAI47_19480 at 125.743 kb on + strand, within IAI47_19480 at 125.743 kb on + strand, within IAI47_19480 at 125.744 kb on - strand, within IAI47_19480 at 125.799 kb on + strand, within IAI47_19480 at 125.800 kb on - strand, within IAI47_19480 at 125.847 kb on + strand, within IAI47_19480 at 125.847 kb on + strand, within IAI47_19480 at 125.847 kb on + strand, within IAI47_19480 at 126.008 kb on + strand, within IAI47_19480 at 126.009 kb on - strand, within IAI47_19480 at 126.009 kb on - strand, within IAI47_19480
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 122,907 - IAI47_19470 0.35 -1.0 122,907 - IAI47_19470 0.35 +1.4 122,907 - IAI47_19470 0.35 +0.7 122,907 - IAI47_19470 0.35 +0.3 122,908 + IAI47_19470 0.35 +1.6 122,908 + IAI47_19470 0.35 -2.8 122,908 + IAI47_19470 0.35 +2.5 122,909 - IAI47_19470 0.35 -1.4 122,909 - IAI47_19470 0.35 -2.3 122,909 - IAI47_19470 0.35 +0.3 122,909 - IAI47_19470 0.35 +1.2 122,909 - IAI47_19470 0.35 -0.4 122,994 + IAI47_19470 0.41 -1.6 122,995 - IAI47_19470 0.41 +0.6 122,995 - IAI47_19470 0.41 -1.0 123,045 + IAI47_19470 0.44 -1.3 123,079 + IAI47_19470 0.47 -1.8 123,079 + IAI47_19470 0.47 +0.6 123,080 - IAI47_19470 0.47 +0.0 123,092 + IAI47_19470 0.48 +0.6 123,101 + IAI47_19470 0.48 -1.7 123,159 + IAI47_19470 0.53 +0.7 123,183 - IAI47_19470 0.54 -2.1 123,183 - IAI47_19470 0.54 -0.6 123,239 + IAI47_19470 0.58 -1.6 123,256 + IAI47_19470 0.59 +2.3 123,256 + IAI47_19470 0.59 -1.2 123,257 - IAI47_19470 0.59 +0.2 123,281 + IAI47_19470 0.61 -1.0 123,282 - IAI47_19470 0.61 -1.6 123,282 - IAI47_19470 0.61 +0.9 123,303 + IAI47_19470 0.63 -2.7 123,414 + IAI47_19470 0.71 -0.5 123,420 + IAI47_19470 0.71 -0.4 123,420 + IAI47_19470 0.71 +0.5 123,420 + IAI47_19470 0.71 +0.4 123,421 - IAI47_19470 0.71 +0.6 123,421 - IAI47_19470 0.71 -2.3 123,421 - IAI47_19470 0.71 +1.0 123,421 - IAI47_19470 0.71 -1.4 123,425 + IAI47_19470 0.71 -1.2 123,510 + IAI47_19470 0.77 +0.7 123,511 - IAI47_19470 0.77 -0.7 123,533 - IAI47_19470 0.79 -2.0 123,549 - IAI47_19470 0.80 -0.2 123,575 + IAI47_19470 0.82 +1.5 123,575 + IAI47_19470 0.82 +0.5 123,575 + IAI47_19470 0.82 +0.4 123,576 - IAI47_19470 0.82 +0.0 123,576 - IAI47_19470 0.82 +0.7 123,576 - IAI47_19470 0.82 +1.8 123,576 - IAI47_19470 0.82 -0.6 123,583 + IAI47_19470 0.82 -1.8 123,583 + IAI47_19470 0.82 +1.8 123,583 + IAI47_19470 0.82 +0.9 123,583 + IAI47_19470 0.82 +0.0 123,584 - IAI47_19470 0.83 +1.4 123,584 - IAI47_19470 0.83 +1.5 123,584 - IAI47_19470 0.83 -0.7 123,584 - IAI47_19470 0.83 +0.5 123,584 - IAI47_19470 0.83 +0.4 123,584 - IAI47_19470 0.83 -0.5 123,584 - IAI47_19470 0.83 +0.2 123,584 - IAI47_19470 0.83 +2.0 123,584 - IAI47_19470 0.83 -1.2 123,584 - IAI47_19470 0.83 -0.9 123,584 - IAI47_19470 0.83 -0.2 123,648 + IAI47_19470 0.87 -0.4 123,648 + IAI47_19470 0.87 -1.8 123,648 + IAI47_19470 0.87 +1.4 123,649 - IAI47_19470 0.87 -2.3 123,649 - IAI47_19470 0.87 -2.8 123,649 - IAI47_19470 0.87 +0.3 123,673 + IAI47_19470 0.89 -2.2 123,674 - IAI47_19470 0.89 -0.2 123,674 - IAI47_19470 0.89 +0.0 123,764 + -0.7 123,764 + +0.8 123,764 + -0.4 123,764 + -0.7 123,764 + +2.5 123,764 + -1.6 123,765 - -2.5 123,765 - -0.4 123,832 + +2.0 123,832 + +0.6 123,832 + -1.9 123,833 - +0.9 123,833 - +4.2 123,880 + +0.6 124,126 + IAI47_19475 0.17 +1.4 124,127 - IAI47_19475 0.17 -1.9 124,127 - IAI47_19475 0.17 +1.8 124,298 + IAI47_19475 0.30 -0.3 124,298 + IAI47_19475 0.30 +0.0 124,298 + IAI47_19475 0.30 -0.3 124,298 + IAI47_19475 0.30 -2.2 124,299 - IAI47_19475 0.30 +1.6 124,299 - IAI47_19475 0.30 -2.3 124,299 - IAI47_19475 0.30 -1.5 124,299 - IAI47_19475 0.30 -0.6 124,299 - IAI47_19475 0.30 +2.1 124,438 + IAI47_19475 0.41 -0.8 124,438 + IAI47_19475 0.41 +2.6 124,438 + IAI47_19475 0.41 -1.6 124,439 - IAI47_19475 0.41 -1.4 124,439 - IAI47_19475 0.41 +0.0 124,439 - IAI47_19475 0.41 -0.4 124,439 - IAI47_19475 0.41 +1.9 124,527 + IAI47_19475 0.48 -1.0 124,527 + IAI47_19475 0.48 -3.3 124,528 - IAI47_19475 0.48 +0.5 124,528 - IAI47_19475 0.48 -0.6 124,568 - IAI47_19475 0.51 -1.8 124,568 - IAI47_19475 0.51 -1.2 124,679 + IAI47_19475 0.60 +1.0 124,727 + IAI47_19475 0.64 -2.2 124,727 + IAI47_19475 0.64 +0.3 124,727 + IAI47_19475 0.64 +1.2 124,727 + IAI47_19475 0.64 -0.7 124,728 - IAI47_19475 0.64 -1.0 124,728 - IAI47_19475 0.64 -0.4 124,767 + IAI47_19475 0.67 +1.9 124,768 - IAI47_19475 0.67 -0.8 124,847 - IAI47_19475 0.73 -3.0 124,911 + IAI47_19475 0.78 -2.1 124,935 - IAI47_19475 0.80 +1.9 124,943 + IAI47_19475 0.80 +3.0 124,943 + IAI47_19475 0.80 -0.4 124,944 - IAI47_19475 0.81 -0.4 124,944 - IAI47_19475 0.81 -2.8 124,965 + IAI47_19475 0.82 -0.2 124,971 + IAI47_19475 0.83 -1.4 124,981 + IAI47_19475 0.83 -1.8 124,982 - IAI47_19475 0.84 +0.6 125,071 - -0.1 125,114 + -1.5 125,114 + +0.4 125,114 + -0.4 125,114 + +0.3 125,115 - -1.6 125,125 + -0.7 125,130 + +2.0 125,131 - -2.0 125,136 + +0.0 125,195 + +0.2 125,195 + -0.5 125,195 + +4.4 125,196 - +0.6 125,196 - +3.2 125,196 - +1.0 125,196 - -1.1 125,208 + -0.9 125,211 + +0.7 125,211 + +0.2 125,212 - +1.9 125,212 - -1.6 125,212 - -2.3 125,212 - +1.2 125,212 - -1.6 125,222 - -1.2 125,243 + +0.9 125,244 - +0.3 125,244 - -0.4 125,244 - +3.4 125,244 - -1.9 125,247 + -1.4 125,247 + -0.2 125,247 + +0.9 125,248 - -1.4 125,248 - +3.0 125,248 - -0.6 125,317 - +0.3 125,329 + -2.2 125,329 + -1.9 125,329 + +1.3 125,329 + -0.9 125,329 + +2.3 125,329 + -0.6 125,329 + +0.2 125,330 - +0.2 125,330 - +2.3 125,330 - +1.3 125,330 - -0.8 125,332 + -1.8 125,332 + +1.1 125,341 + -0.1 125,341 + +1.6 125,342 - -0.4 125,350 + -1.6 125,350 + +2.2 125,365 + +0.1 125,365 + -2.0 125,366 - -0.4 125,366 - +2.1 125,387 + -3.4 125,388 - -0.4 125,388 - -1.6 125,388 - -0.9 125,388 - +1.5 125,414 - -2.0 125,414 - -2.3 125,414 - +1.0 125,414 - -1.2 125,496 + IAI47_19480 0.13 -0.1 125,496 + IAI47_19480 0.13 +1.3 125,496 + IAI47_19480 0.13 +0.0 125,497 - IAI47_19480 0.13 -1.2 125,497 - IAI47_19480 0.13 -0.5 125,520 + IAI47_19480 0.14 +0.9 125,520 + IAI47_19480 0.14 +0.7 125,521 - IAI47_19480 0.15 -0.4 125,521 - IAI47_19480 0.15 -0.4 125,521 - IAI47_19480 0.15 -0.3 125,660 - IAI47_19480 0.24 +1.0 125,685 + IAI47_19480 0.26 +1.6 125,686 - IAI47_19480 0.26 +0.3 125,686 - IAI47_19480 0.26 +1.0 125,686 - IAI47_19480 0.26 -1.7 125,738 + IAI47_19480 0.29 -1.7 125,738 + IAI47_19480 0.29 -0.7 125,738 + IAI47_19480 0.29 -0.6 125,739 - IAI47_19480 0.29 +0.6 125,743 + IAI47_19480 0.29 -1.7 125,743 + IAI47_19480 0.29 -1.0 125,743 + IAI47_19480 0.29 +4.2 125,743 + IAI47_19480 0.29 -0.1 125,743 + IAI47_19480 0.29 -0.5 125,743 + IAI47_19480 0.29 +0.0 125,743 + IAI47_19480 0.29 +1.6 125,743 + IAI47_19480 0.29 -1.7 125,744 - IAI47_19480 0.30 +0.9 125,799 + IAI47_19480 0.33 -0.7 125,800 - IAI47_19480 0.33 -0.2 125,847 + IAI47_19480 0.36 -1.2 125,847 + IAI47_19480 0.36 -0.4 125,847 + IAI47_19480 0.36 +1.3 126,008 + IAI47_19480 0.47 -1.5 126,009 - IAI47_19480 0.47 +2.1 126,009 - IAI47_19480 0.47 -1.5
Or see this region's nucleotide sequence