Strain Fitness in Pantoea sp. MT58 around IAI47_19455

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
119,006	+				+2.4
119,006	+				+1.8
119,007	-				-1.7
119,016	-				-1.0
119,016	-				-0.7
119,028	+				+1.6
119,028	+				+2.1
119,028	+				+0.2
119,028	+				+4.3
119,028	+				-1.2
119,029	-				+0.0
119,046	+				+1.6
119,046	+				+1.1
119,046	+				+0.5
119,047	-				-2.3
119,047	-				+1.3
119,047	-				+2.1
119,047	-				+0.4
119,052	+				+1.6
119,052	+				-2.2
119,053	-				-0.7
119,053	-				+2.9
119,053	-				+1.3
119,079	+				-1.7
119,080	-				+1.6
119,080	-				+0.0
119,094	+				-2.5
119,094	+				-0.6
119,095	-				-1.4
119,139	+				+0.0
119,139	+				-1.3
119,139	+				+1.0
119,139	+				+1.9
119,139	+				+1.0
119,139	+				-2.0
119,139	+				-2.0
119,139	+				+1.9
119,140	-				+1.4
119,140	-				+0.6
119,140	-				-2.6
119,140	-				+0.9
119,207	-				+2.2
119,217	+				-1.4
119,217	+				+0.9
119,217	+				+0.0
119,218	-				+1.4
119,239	+				-1.2
119,240	-				+0.0
119,249	+				-1.2
119,250	-				-0.7
119,250	-				+3.3
119,274	+				-1.8
119,274	+				+2.0
119,275	-				+0.6
119,365	-		IAI47_19450	0.19	-0.4
119,385	+		IAI47_19450	0.22	-1.0
119,396	-		IAI47_19450	0.24	+1.0
119,423	+		IAI47_19450	0.28	-1.4
119,424	-		IAI47_19450	0.28	-0.3
119,541	+		IAI47_19450	0.46	+1.6
119,541	+		IAI47_19450	0.46	-2.2
119,542	-		IAI47_19450	0.46	+1.6
119,554	-		IAI47_19450	0.47	+0.6
119,577	-		IAI47_19450	0.51	-0.7
119,577	-		IAI47_19450	0.51	+0.4
119,577	-		IAI47_19450	0.51	-0.2
119,586	+		IAI47_19450	0.52	-0.9
119,586	+		IAI47_19450	0.52	+1.4
119,587	-		IAI47_19450	0.52	+0.4
119,597	-		IAI47_19450	0.54	-1.0
119,597	-		IAI47_19450	0.54	+1.0
119,597	-		IAI47_19450	0.54	+1.1
119,600	+		IAI47_19450	0.54	+0.3
119,600	+		IAI47_19450	0.54	-3.3
119,600	+		IAI47_19450	0.54	-0.4
119,600	+		IAI47_19450	0.54	-2.3
119,600	+		IAI47_19450	0.54	-1.8
119,600	+		IAI47_19450	0.54	+0.0
119,600	+		IAI47_19450	0.54	-2.1
119,600	+		IAI47_19450	0.54	-1.3
119,600	+		IAI47_19450	0.54	+0.0
119,600	+		IAI47_19450	0.54	-0.3
119,600	+		IAI47_19450	0.54	+0.9
119,601	-		IAI47_19450	0.54	-0.4
119,601	-		IAI47_19450	0.54	-0.7
119,601	-		IAI47_19450	0.54	-2.8
119,601	-		IAI47_19450	0.54	-1.0
119,601	-		IAI47_19450	0.54	-1.4
119,601	-		IAI47_19450	0.54	-1.6
119,601	-		IAI47_19450	0.54	-1.6
119,601	-		IAI47_19450	0.54	-1.4
119,601	-		IAI47_19450	0.54	+0.1
119,601	-		IAI47_19450	0.54	-0.6
119,601	-		IAI47_19450	0.54	-1.0
119,601	-		IAI47_19450	0.54	-2.2
119,601	-		IAI47_19450	0.54	-1.7
119,604	+		IAI47_19450	0.55	+0.6
119,604	+		IAI47_19450	0.55	-2.3
119,604	+		IAI47_19450	0.55	-1.3
119,604	+		IAI47_19450	0.55	+1.0
119,604	+		IAI47_19450	0.55	-0.5
119,604	+		IAI47_19450	0.55	+1.1
119,604	+		IAI47_19450	0.55	-0.4
119,604	+		IAI47_19450	0.55	-0.7
119,604	+		IAI47_19450	0.55	+2.9
119,604	+		IAI47_19450	0.55	+0.7
119,604	+		IAI47_19450	0.55	-0.8
119,604	+		IAI47_19450	0.55	-2.2
119,605	-		IAI47_19450	0.55	-3.0
119,605	-		IAI47_19450	0.55	+2.9
119,605	-		IAI47_19450	0.55	-2.8
119,605	-		IAI47_19450	0.55	-1.8
119,605	-				-0.7
119,605	-		IAI47_19450	0.55	+0.4
119,605	-		IAI47_19450	0.55	+0.3
119,605	-		IAI47_19450	0.55	+2.2
119,605	-		IAI47_19450	0.55	-1.0
119,605	-		IAI47_19450	0.55	+1.6
119,605	-		IAI47_19450	0.55	+1.8
119,606	+		IAI47_19450	0.55	+0.4
119,606	+		IAI47_19450	0.55	+0.8
119,606	+		IAI47_19450	0.55	+2.8
119,606	+		IAI47_19450	0.55	-1.2
119,607	-		IAI47_19450	0.55	-2.6
119,607	-		IAI47_19450	0.55	+0.3
119,607	-		IAI47_19450	0.55	-0.6
119,612	+		IAI47_19450	0.56	+0.9
119,613	-		IAI47_19450	0.56	+1.4
119,613	-		IAI47_19450	0.56	+0.0
119,662	+		IAI47_19450	0.64	+0.8
119,662	+		IAI47_19450	0.64	-1.6
119,730	-		IAI47_19450	0.74	-0.4
119,744	+		IAI47_19450	0.76	+0.0
119,744	+		IAI47_19450	0.76	-2.3
119,744	+		IAI47_19450	0.76	+0.2
119,744	+		IAI47_19450	0.76	-0.7
119,744	+		IAI47_19450	0.76	+1.9
119,744	+		IAI47_19450	0.76	+1.8
119,744	+		IAI47_19450	0.76	+0.4
119,744	+		IAI47_19450	0.76	-2.2
119,745	-		IAI47_19450	0.76	-1.2
119,745	-		IAI47_19450	0.76	-0.4
119,783	+		IAI47_19450	0.82	+0.4
119,783	+		IAI47_19450	0.82	-2.0
119,784	-		IAI47_19450	0.82	+0.6
119,835	+		IAI47_19450	0.89	-0.7
119,835	+		IAI47_19450	0.89	+0.5
119,835	+		IAI47_19450	0.89	-2.4
119,835	+		IAI47_19450	0.89	+0.6
119,835	+		IAI47_19450	0.89	-2.7
119,836	-		IAI47_19450	0.89	+2.0
119,836	-		IAI47_19450	0.89	+0.0
119,836	-		IAI47_19450	0.89	-2.4
119,836	-		IAI47_19450	0.89	-0.4
119,836	-		IAI47_19450	0.89	-0.5
119,837	+		IAI47_19450	0.90	-0.9
119,837	+		IAI47_19450	0.90	-0.8
119,837	+		IAI47_19450	0.90	+1.2
119,837	+		IAI47_19450	0.90	-3.1
119,837	+		IAI47_19450	0.90	+2.2
119,837	+		IAI47_19450	0.90	+2.7
119,837	+		IAI47_19450	0.90	-0.2
119,838	-		IAI47_19450	0.90	-0.4
119,838	-		IAI47_19450	0.90	-1.6
119,838	-		IAI47_19450	0.90	-1.7
119,838	-		IAI47_19450	0.90	+1.3
119,838	-		IAI47_19450	0.90	-1.7
119,838	-		IAI47_19450	0.90	-0.2
119,838	-		IAI47_19450	0.90	-2.5
119,889	+				+0.3
119,889	+				-0.1
119,890	-				-0.5
119,890	-				-1.0
119,904	+				-2.6
119,982	-				+1.2
119,989	+				-0.9
119,989	+				+0.3
120,008	+				-1.8
120,012	+				+1.2
120,012	+				-2.1
120,012	+				+1.4
120,013	-				-2.6
120,184	+		IAI47_19455	0.23	+0.6
120,184	+		IAI47_19455	0.23	-0.1
120,185	-		IAI47_19455	0.23	+2.4
120,236	+		IAI47_19455	0.29	+1.8
120,236	+		IAI47_19455	0.29	-2.8
120,236	+		IAI47_19455	0.29	-0.2
120,237	-		IAI47_19455	0.29	+1.6
120,261	-		IAI47_19455	0.32	-0.7
120,294	-		IAI47_19455	0.36	-1.6
120,345	+		IAI47_19455	0.42	-2.1
120,345	+		IAI47_19455	0.42	-3.1
120,345	+		IAI47_19455	0.42	+0.9
120,345	+		IAI47_19455	0.42	+0.6
120,345	+		IAI47_19455	0.42	-0.8
120,346	-		IAI47_19455	0.42	-1.4
120,346	-		IAI47_19455	0.42	-2.0
120,346	-		IAI47_19455	0.42	-1.0
120,346	-		IAI47_19455	0.42	-2.6
120,346	-		IAI47_19455	0.42	+0.7
120,349	+		IAI47_19455	0.42	+0.5
120,349	+		IAI47_19455	0.42	+0.7
120,358	+		IAI47_19455	0.43	+0.3
120,358	+		IAI47_19455	0.43	-0.4
120,359	-		IAI47_19455	0.44	-2.8
120,359	-		IAI47_19455	0.44	+0.6
120,359	-		IAI47_19455	0.44	+2.6
120,401	+		IAI47_19455	0.48	-2.6
120,402	-		IAI47_19455	0.49	-0.4
120,476	-		IAI47_19455	0.57	+0.3
120,506	+		IAI47_19455	0.61	+0.2
120,506	+		IAI47_19455	0.61	+0.3
120,506	+		IAI47_19455	0.61	+1.3
120,507	-		IAI47_19455	0.61	+0.6
120,507	-		IAI47_19455	0.61	+0.6
120,557	+		IAI47_19455	0.67	+0.8
120,557	+		IAI47_19455	0.67	+2.4
120,626	+		IAI47_19455	0.75	-1.7
120,626	+		IAI47_19455	0.75	-0.3
120,639	-		IAI47_19455	0.76	+0.6
120,639	-		IAI47_19455	0.76	+0.9
120,758	+				+3.1
120,758	+				-2.8
120,759	-				-0.7
120,760	+				+2.0
120,761	-				+1.3
120,811	-				+0.2
120,822	+				+0.6
120,822	+				-0.1
120,856	+				+1.8
120,856	+				+1.0
120,856	+				+0.5
120,856	+				-0.0
120,857	-				-0.7
120,908	+				-2.0
120,909	-				-3.0
120,913	+				+1.6
120,914	-				+0.4
120,914	-				+0.2
120,914	-				-0.3
121,036	+				-1.2
121,091	+		IAI47_19460	0.12	-0.6
121,331	+		IAI47_19460	0.38	+0.6
121,360	+		IAI47_19460	0.42	+1.1
121,361	-		IAI47_19460	0.42	+0.5
121,361	-		IAI47_19460	0.42	-0.6
121,363	+		IAI47_19460	0.42	+1.5
121,363	+		IAI47_19460	0.42	-0.6
121,363	+		IAI47_19460	0.42	+1.7
121,363	+		IAI47_19460	0.42	+0.8
121,364	-		IAI47_19460	0.42	-0.3
121,364	-		IAI47_19460	0.42	+0.7
121,394	-		IAI47_19460	0.45	+1.3
121,394	-		IAI47_19460	0.45	-0.9
121,411	+		IAI47_19460	0.47	-1.4
121,411	+		IAI47_19460	0.47	-2.1
121,411	+		IAI47_19460	0.47	+0.4
121,412	-		IAI47_19460	0.47	-0.1
121,412	-		IAI47_19460	0.47	-0.7
121,414	+		IAI47_19460	0.48	-1.2
121,415	-		IAI47_19460	0.48	+0.5
121,541	-		IAI47_19460	0.62	+0.0
121,541	-		IAI47_19460	0.62	+1.5
121,541	-		IAI47_19460	0.62	-1.7
121,541	-		IAI47_19460	0.62	-0.6
121,541	-		IAI47_19460	0.62	-1.7
121,541	-		IAI47_19460	0.62	+2.1
121,541	-		IAI47_19460	0.62	+0.2
121,551	-		IAI47_19460	0.63	+0.8
121,551	-		IAI47_19460	0.63	-1.8
121,553	+		IAI47_19460	0.63	+0.6
121,553	+		IAI47_19460	0.63	-2.0
121,554	-		IAI47_19460	0.63	+2.4
121,650	+		IAI47_19460	0.74	-0.7
121,650	+		IAI47_19460	0.74	+0.3
121,687	-		IAI47_19460	0.78	-0.3
121,696	-		IAI47_19460	0.79	-2.8
121,696	-		IAI47_19460	0.79	-1.1
121,732	+		IAI47_19460	0.83	+2.2
121,747	-		IAI47_19460	0.85	-2.5
121,747	-		IAI47_19460	0.85	+1.4
121,757	+		IAI47_19460	0.86	+1.4
121,757	+		IAI47_19460	0.86	-0.1
121,757	+		IAI47_19460	0.86	-0.6
121,790	+		IAI47_19460	0.90	-1.8
121,790	+		IAI47_19460	0.90	-2.3
121,790	+		IAI47_19460	0.90	+2.5
121,790	+		IAI47_19460	0.90	-2.5
121,790	+		IAI47_19460	0.90	+0.4
121,790	+		IAI47_19460	0.90	+0.6
121,790	+		IAI47_19460	0.90	-0.1
121,790	+		IAI47_19460	0.90	+0.3
121,790	+		IAI47_19460	0.90	+1.0
121,790	+		IAI47_19460	0.90	-1.8
121,791	-		IAI47_19460	0.90	+0.4
121,791	-		IAI47_19460	0.90	+0.4
121,791	-		IAI47_19460	0.90	+0.8
121,791	-		IAI47_19460	0.90	+2.0
121,791	-		IAI47_19460	0.90	+0.0
121,791	-		IAI47_19460	0.90	-0.6
121,791	-		IAI47_19460	0.90	-1.4
121,791	-		IAI47_19460	0.90	+3.8