Strain Fitness in Pantoea sp. MT58 around IAI47_18550

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,947,911	-				-0.5
3,947,930	+				-0.1
3,947,930	+				+1.7
3,947,930	+				-1.1
3,947,930	+				-1.3
3,947,930	+				+0.1
3,947,931	-				+0.0
3,947,931	-				+1.8
3,947,931	-				+1.5
3,947,931	-				-0.2
3,947,931	-				-3.3
3,947,931	-				+1.7
3,947,932	+				+0.6
3,947,932	+				-0.6
3,947,932	+				-1.9
3,947,946	+				+2.1
3,947,947	-				-1.1
3,947,947	-				+1.6
3,947,948	+				+0.1
3,947,948	+				-1.4
3,947,949	-				+1.3
3,947,949	-				+0.6
3,947,949	-				-1.1
3,947,962	-				+0.9
3,947,962	-				-2.3
3,947,962	-				+0.1
3,947,990	+				-1.5
3,947,990	+				-0.9
3,947,990	+				+0.4
3,947,991	-				-2.7
3,947,991	-				-1.7
3,948,004	-		IAI47_18550	0.13	-0.2
3,948,004	-		IAI47_18550	0.13	-0.1
3,948,156	+		IAI47_18550	0.67	-0.1
3,948,156	+		IAI47_18550	0.67	-2.9
3,948,157	-		IAI47_18550	0.67	-1.2
3,948,168	+		IAI47_18550	0.71	-1.2
3,948,168	+		IAI47_18550	0.71	-2.9
3,948,169	-		IAI47_18550	0.71	+1.1
3,948,218	-		IAI47_18550	0.89	-3.6
3,948,218	-		IAI47_18550	0.89	-1.9
3,948,225	+				-0.4
3,948,225	+				-1.2
3,948,225	+				-0.7
3,948,226	-				+1.3
3,948,226	-				-1.3
3,948,226	-				-1.5
3,948,238	+				-0.4
3,948,238	+				+1.8
3,948,239	-				-1.5
3,948,247	+				-1.9
3,948,247	+				-1.9
3,948,247	+				-3.3
3,948,247	+				+0.8
3,948,248	-				+1.3
3,948,248	-				-0.3
3,948,248	-				+1.0
3,948,248	-				-2.2
3,948,248	-				+1.6
3,948,248	-				+0.1
3,948,248	-				-0.2
3,948,248	-				-1.3
3,948,251	+				+1.8
3,948,251	+				+1.3
3,948,251	+				+2.0
3,948,251	+				-1.6
3,948,251	+				-0.2
3,948,251	+				+1.3
3,948,251	+				+0.0
3,948,252	-				-0.9
3,948,294	+				-0.8
3,948,294	+				+1.1
3,948,295	-				+0.8
3,948,300	-				+0.8
3,948,346	+				+0.7
3,948,346	+				-1.8
3,948,347	-				+0.1
3,948,347	-				-2.7
3,948,347	-				+0.2
3,948,347	-				+2.0
3,948,347	-				+0.9
3,948,347	-				+0.0
3,948,347	-				-0.4
3,948,347	-				+0.4
3,948,347	-				-1.8
3,948,347	-				+1.8
3,948,347	-				-1.1
3,948,424	-				+1.7
3,948,424	-				-0.5
3,948,424	-				+2.8
3,948,440	+				+2.0
3,948,440	+				+0.2
3,948,440	+				+4.1
3,948,441	-				+0.6
3,948,441	-				+3.2
3,948,477	+		IAI47_18555	0.11	-0.6
3,948,477	+		IAI47_18555	0.11	-2.1
3,948,477	+		IAI47_18555	0.11	+2.0
3,948,477	+		IAI47_18555	0.11	+1.1
3,948,478	-		IAI47_18555	0.11	+1.1
3,948,478	-		IAI47_18555	0.11	+2.3
3,948,543	+		IAI47_18555	0.14	-0.6
3,948,544	-		IAI47_18555	0.14	-1.9
3,948,544	-		IAI47_18555	0.14	+0.8
3,948,655	-		IAI47_18555	0.20	-1.2
3,948,665	+		IAI47_18555	0.20	+1.5
3,948,665	+		IAI47_18555	0.20	-1.8
3,948,665	+		IAI47_18555	0.20	+1.0
3,948,665	+		IAI47_18555	0.20	-1.6
3,948,665	+		IAI47_18555	0.20	-1.2
3,948,665	+		IAI47_18555	0.20	-0.3
3,948,665	+		IAI47_18555	0.20	-0.8
3,948,665	+		IAI47_18555	0.20	+0.8
3,948,666	-		IAI47_18555	0.20	-1.3
3,948,666	-		IAI47_18555	0.20	-0.1
3,948,666	-		IAI47_18555	0.20	+1.2
3,948,666	-		IAI47_18555	0.20	-0.6
3,948,666	-		IAI47_18555	0.20	+2.5
3,948,666	-		IAI47_18555	0.20	-0.2
3,948,666	-		IAI47_18555	0.20	-0.1
3,948,666	-		IAI47_18555	0.20	+0.5
3,948,666	-		IAI47_18555	0.20	-0.2
3,948,669	+		IAI47_18555	0.20	+2.0
3,948,669	+		IAI47_18555	0.20	-1.9
3,948,669	+		IAI47_18555	0.20	+0.3
3,948,670	-		IAI47_18555	0.20	-2.3
3,948,735	+		IAI47_18555	0.24	+2.0
3,948,735	+		IAI47_18555	0.24	+2.0
3,948,735	+		IAI47_18555	0.24	-1.8
3,948,735	+		IAI47_18555	0.24	-0.6
3,948,735	+		IAI47_18555	0.24	-0.8
3,948,735	+		IAI47_18555	0.24	+3.5
3,948,736	-		IAI47_18555	0.24	+2.7
3,948,777	+		IAI47_18555	0.26	-0.8
3,948,777	+		IAI47_18555	0.26	-1.0
3,948,778	-		IAI47_18555	0.26	+1.7
3,948,870	+		IAI47_18555	0.30	-0.5
3,948,871	-		IAI47_18555	0.30	-2.0
3,948,871	-		IAI47_18555	0.30	+0.1
3,948,871	-		IAI47_18555	0.30	-1.3
3,948,871	-		IAI47_18555	0.30	+1.1
3,948,871	-		IAI47_18555	0.30	+1.7
3,949,000	+		IAI47_18555	0.36	-1.0
3,949,000	+		IAI47_18555	0.36	-2.4
3,949,000	+		IAI47_18555	0.36	-0.3
3,949,000	+		IAI47_18555	0.36	+1.0
3,949,000	+		IAI47_18555	0.36	-0.2
3,949,000	+		IAI47_18555	0.36	+1.0
3,949,000	+		IAI47_18555	0.36	+0.9
3,949,000	+		IAI47_18555	0.36	-1.6
3,949,000	+		IAI47_18555	0.36	+5.1
3,949,001	-		IAI47_18555	0.36	-0.6
3,949,001	-		IAI47_18555	0.36	+0.9
3,949,001	-		IAI47_18555	0.36	+1.2
3,949,001	-		IAI47_18555	0.36	-0.4
3,949,008	+		IAI47_18555	0.37	-2.9
3,949,010	+		IAI47_18555	0.37	-0.6
3,949,010	+		IAI47_18555	0.37	-1.8
3,949,010	+		IAI47_18555	0.37	-0.0
3,949,010	+		IAI47_18555	0.37	-0.7
3,949,010	+		IAI47_18555	0.37	+0.7
3,949,010	+		IAI47_18555	0.37	+0.3
3,949,010	+		IAI47_18555	0.37	+1.4
3,949,011	-		IAI47_18555	0.37	+1.0
3,949,011	-		IAI47_18555	0.37	-1.6
3,949,011	-		IAI47_18555	0.37	+1.5
3,949,011	-		IAI47_18555	0.37	+2.1
3,949,011	-		IAI47_18555	0.37	+0.2
3,949,011	-		IAI47_18555	0.37	-1.9
3,949,011	-		IAI47_18555	0.37	-0.6
3,949,107	+		IAI47_18555	0.42	+0.1
3,949,107	+		IAI47_18555	0.42	+0.6
3,949,107	+		IAI47_18555	0.42	-0.9
3,949,108	-		IAI47_18555	0.42	+2.5
3,949,108	-		IAI47_18555	0.42	+1.1
3,949,108	-		IAI47_18555	0.42	-1.2
3,949,108	-		IAI47_18555	0.42	-0.0
3,949,108	-		IAI47_18555	0.42	+1.2
3,949,108	-		IAI47_18555	0.42	-0.6
3,949,165	-		IAI47_18555	0.44	-0.4
3,949,230	+		IAI47_18555	0.48	-0.3
3,949,230	+		IAI47_18555	0.48	-1.2
3,949,230	+		IAI47_18555	0.48	-2.0
3,949,231	-		IAI47_18555	0.48	+1.3
3,949,231	-		IAI47_18555	0.48	-2.2
3,949,231	-		IAI47_18555	0.48	-1.7