Strain Fitness in Pantoea sp. MT58 around IAI47_14710

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,103,629	+		IAI47_14705	0.72	+2.5
3,103,630	-		IAI47_14705	0.72	+0.5
3,103,650	+		IAI47_14705	0.74	-1.5
3,103,650	+		IAI47_14705	0.74	+0.2
3,103,650	+		IAI47_14705	0.74	+0.1
3,103,650	+		IAI47_14705	0.74	-0.7
3,103,651	-		IAI47_14705	0.74	-1.3
3,103,651	-		IAI47_14705	0.74	+0.5
3,103,651	-		IAI47_14705	0.74	-1.1
3,103,657	-		IAI47_14705	0.74	-1.3
3,103,670	+		IAI47_14705	0.75	-0.5
3,103,672	+		IAI47_14705	0.75	-1.9
3,103,672	+		IAI47_14705	0.75	-0.1
3,103,672	+		IAI47_14705	0.75	+1.0
3,103,673	-		IAI47_14705	0.75	-0.1
3,103,714	-		IAI47_14705	0.78	-0.9
3,103,727	+		IAI47_14705	0.79	-0.3
3,103,822	+		IAI47_14705	0.86	+0.2
3,103,822	+		IAI47_14705	0.86	-0.5
3,103,822	+		IAI47_14705	0.86	+0.6
3,103,823	-		IAI47_14705	0.86	-2.0
3,103,823	-		IAI47_14705	0.86	+0.8
3,103,823	-		IAI47_14705	0.86	+1.3
3,103,823	-		IAI47_14705	0.86	+0.3
3,103,823	-		IAI47_14705	0.86	+0.5
3,103,831	-		IAI47_14705	0.87	-1.0
3,103,831	-		IAI47_14705	0.87	-0.0
3,103,908	+				+0.5
3,103,909	-				-2.5
3,103,921	-				-1.8
3,103,945	+				-0.6
3,103,946	-				-1.8
3,103,946	-				+0.1
3,103,947	+				-0.5
3,103,948	-				+1.5
3,103,959	+				+0.5
3,103,960	-				+1.8
3,103,960	-				-0.4
3,103,962	+				+0.2
3,103,962	+				-1.9
3,103,962	+				-1.5
3,103,962	+				+0.9
3,103,962	+				+2.5
3,103,962	+				+0.2
3,103,962	+				-0.3
3,103,962	+				+0.1
3,103,962	+				+1.9
3,103,962	+				+2.4
3,103,962	+				+0.1
3,103,963	-				-1.5
3,103,963	-				-2.5
3,103,963	-				+0.7
3,103,963	-				+0.5
3,103,963	-				+0.6
3,103,963	-				+2.8
3,103,963	-				-0.9
3,103,963	-				+0.6
3,103,963	-				+1.4
3,103,963	-				-1.3
3,103,964	-				+1.5
3,104,008	+				-0.1
3,104,008	+				+2.8
3,104,008	+				+0.2
3,104,008	+				-2.4
3,104,009	-				+0.5
3,104,009	-				-2.2
3,104,009	-				+3.3
3,104,009	-				+0.3
3,104,014	-				-1.8
3,104,190	+				+1.8
3,104,190	+				+1.6
3,104,191	-				-0.1
3,104,191	-				+0.5
3,104,199	-				+1.9
3,104,199	-				-0.0
3,104,199	-				+1.6
3,104,199	-				+1.0
3,104,199	-				-1.8
3,104,219	-				+0.3
3,104,219	-				-0.8
3,104,228	+				-0.7
3,104,228	+				+1.2
3,104,228	+				+0.3
3,104,228	+				-1.0
3,104,228	+				+1.6
3,104,229	-				+0.0
3,104,271	+				-2.1
3,104,385	+				+2.5
3,104,509	-				-0.5
3,104,536	+				-2.8
3,104,536	+				+1.9
3,104,536	+				-0.3
3,104,536	+				+2.6
3,104,536	+				-1.3
3,104,537	-				-1.1
3,104,537	-				-1.6
3,104,537	-				+1.4
3,104,537	-				-1.1
3,104,537	-				+1.0
3,104,537	-				-0.8
3,104,538	+				+0.4
3,104,538	+				-0.3
3,104,538	+				+2.1
3,104,538	+				-1.1
3,104,538	+				+3.4
3,104,538	+				-1.3
3,104,538	-				-0.1
3,104,539	-				+1.5
3,104,539	-				-2.3
3,104,539	-				-0.2
3,104,539	-				-3.4
3,104,539	-				-0.9
3,104,577	+				-0.9
3,104,593	+				+0.1
3,104,618	-				+0.9
3,104,725	+		IAI47_14710	0.30	-0.2
3,104,725	+		IAI47_14710	0.30	-1.1
3,104,726	-		IAI47_14710	0.30	+1.6
3,104,726	-		IAI47_14710	0.30	+0.1
3,104,806	+		IAI47_14710	0.47	+2.2
3,104,806	+		IAI47_14710	0.47	+1.1
3,104,806	+		IAI47_14710	0.47	+0.7
3,104,806	+		IAI47_14710	0.47	+3.1
3,104,807	-		IAI47_14710	0.47	+0.5
3,104,807	-		IAI47_14710	0.47	+0.7
3,104,807	-		IAI47_14710	0.47	+0.6
3,104,807	-		IAI47_14710	0.47	+2.5
3,104,832	-		IAI47_14710	0.52	+2.9
3,104,832	-		IAI47_14710	0.52	-0.2
3,104,832	-		IAI47_14710	0.52	-0.9
3,104,832	-		IAI47_14710	0.52	+0.5
3,104,893	+		IAI47_14710	0.64	-0.9
3,104,986	+		IAI47_14710	0.83	+0.5
3,104,986	+		IAI47_14710	0.83	+0.5
3,105,100	+				+0.6
3,105,100	+				+1.1
3,105,100	+				+1.5
3,105,100	+				-0.8
3,105,100	+				+1.2
3,105,100	+				-2.1
3,105,100	+				-1.0
3,105,100	+				+0.9
3,105,100	+				-0.6
3,105,100	+				-1.5
3,105,100	+				+0.1
3,105,101	-				-2.6
3,105,101	-				+1.4
3,105,101	-				-0.8
3,105,101	-				+0.9
3,105,101	-				-0.8
3,105,101	-				-0.0
3,105,101	-				+0.8
3,105,101	-				+0.9
3,105,101	-				-0.1
3,105,101	-				-0.1
3,105,101	-				+1.6
3,105,101	-				-2.0
3,105,101	-				+0.2
3,105,101	-				-2.4
3,105,101	-				-0.5
3,105,101	-				-0.4
3,105,101	-				+0.1
3,105,101	-				-0.6
3,105,101	-				+0.5
3,105,101	-				-1.6
3,105,101	-				-1.0
3,105,101	-				+0.4
3,105,103	+				+0.5
3,105,103	+				+0.5
3,105,104	-				+2.3
3,105,104	-				-0.5
3,105,112	+				+3.3
3,105,112	+				+0.1
3,105,112	+				-1.5
3,105,112	+				+0.5
3,105,113	-				+0.3
3,105,113	-				-0.4
3,105,113	-				-0.7
3,105,113	-				-2.1
3,105,113	-				-0.7
3,105,113	-				+0.8
3,105,113	-				+1.0
3,105,113	-				+1.6
3,105,120	+				-0.9
3,105,120	+				+0.7
3,105,120	+				-1.3
3,105,121	-				-0.5
3,105,124	+				+1.3
3,105,125	-				-1.1
3,105,125	-				-0.2
3,105,125	-				-0.6
3,105,147	+				+0.1
3,105,147	+				+0.2
3,105,147	+				-0.6
3,105,147	+				+3.5
3,105,147	+				-1.0
3,105,147	+				-1.4
3,105,147	+				+1.1
3,105,147	+				-1.8
3,105,147	+				-1.7
3,105,147	+				+3.2
3,105,147	+				-0.2
3,105,148	-				+1.2
3,105,148	-				+2.4
3,105,148	-				-0.3
3,105,148	-				-1.6
3,105,148	-				-1.1
3,105,148	-				-0.2
3,105,149	+				-3.5
3,105,149	+				-0.3
3,105,149	+				-0.5
3,105,170	+				+0.9
3,105,170	+				-1.8
3,105,170	+				+1.4
3,105,170	+				+0.9
3,105,170	+				+3.5
3,105,171	-				+1.2
3,105,171	-				-2.0
3,105,171	-				-2.2
3,105,171	-				+3.8
3,105,171	-				+2.5
3,105,173	+				+1.2
3,105,173	+				-1.7
3,105,173	+				+3.0
3,105,173	+				+1.3
3,105,173	+				+2.5
3,105,173	+				-0.2
3,105,173	+				-2.3
3,105,174	-				-2.1
3,105,174	-				+0.3
3,105,174	-				+2.3
3,105,174	-				-1.1
3,105,174	-				-0.2
3,105,181	+				-1.3
3,105,212	-				+1.9
3,105,213	-				+0.1
3,105,219	+				+0.1
3,105,220	-				-0.8
3,105,220	-				+3.5
3,105,220	-				+3.1
3,105,220	-				-0.0
3,105,279	+				+0.4
3,105,279	+				+0.0
3,105,279	+				+0.5
3,105,280	-				+0.1
3,105,309	-		IAI47_14715	0.12	+2.2
3,105,345	+		IAI47_14715	0.15	-0.6
3,105,345	+		IAI47_14715	0.15	-0.9
3,105,346	-		IAI47_14715	0.16	+0.8
3,105,346	-		IAI47_14715	0.16	-1.5
3,105,362	-		IAI47_14715	0.17	+3.1
3,105,556	+		IAI47_14715	0.38	+1.3
3,105,608	-		IAI47_14715	0.44	-0.4
3,105,634	+		IAI47_14715	0.47	-0.5
3,105,634	+		IAI47_14715	0.47	-2.9
3,105,634	+		IAI47_14715	0.47	-2.3
3,105,635	-		IAI47_14715	0.47	-1.3
3,105,647	+		IAI47_14715	0.48	-2.8
3,105,647	+		IAI47_14715	0.48	+0.1
3,105,647	+		IAI47_14715	0.48	+0.3
3,105,648	-		IAI47_14715	0.48	-1.7
3,105,650	-		IAI47_14715	0.49	-1.7
3,105,650	-		IAI47_14715	0.49	+1.4
3,105,771	-		IAI47_14715	0.62	-0.5
3,105,771	-		IAI47_14715	0.62	-1.6
3,105,771	-		IAI47_14715	0.62	-1.4
3,105,771	-		IAI47_14715	0.62	+3.4
3,105,771	-		IAI47_14715	0.62	+1.6
3,105,771	-		IAI47_14715	0.62	+1.7
3,105,771	-		IAI47_14715	0.62	+2.5
3,105,771	-		IAI47_14715	0.62	-0.1
3,105,771	-		IAI47_14715	0.62	+0.9
3,105,771	-		IAI47_14715	0.62	-1.6
3,105,771	-		IAI47_14715	0.62	-1.8
3,105,801	-		IAI47_14715	0.65	+0.2
3,105,867	+		IAI47_14715	0.72	+1.6
3,105,867	+		IAI47_14715	0.72	+2.0
3,105,868	-		IAI47_14715	0.72	-1.0
3,105,868	-		IAI47_14715	0.72	+1.9
3,105,977	+		IAI47_14715	0.84	-1.5
3,105,977	+		IAI47_14715	0.84	+1.5
3,105,978	-		IAI47_14715	0.84	-0.7
3,105,978	-		IAI47_14715	0.84	-0.3
3,105,979	+		IAI47_14715	0.84	-0.5
3,105,979	+		IAI47_14715	0.84	+0.1
3,105,979	+		IAI47_14715	0.84	-1.3
3,105,979	+		IAI47_14715	0.84	-0.7
3,105,980	-		IAI47_14715	0.84	+0.9
3,105,980	-		IAI47_14715	0.84	-3.5
3,105,980	-		IAI47_14715	0.84	+0.5
3,105,980	-		IAI47_14715	0.84	-0.1
3,106,046	+				+0.3
3,106,046	+				-1.8
3,106,047	-				+1.0
3,106,047	-				+0.7
3,106,047	-				+1.6
3,106,047	-				-3.2
3,106,056	+				+0.4
3,106,056	+				-1.3
3,106,057	-				-1.2
3,106,057	-				+1.3
3,106,057	-				-0.3
3,106,057	-				+3.3