Strain Fitness in Pantoea sp. MT58 around IAI47_12435

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,623,279	+		IAI47_12425	0.67	+2.7
2,623,279	+		IAI47_12425	0.67	-0.9
2,623,280	-		IAI47_12425	0.67	+2.6
2,623,280	-		IAI47_12425	0.67	-1.3
2,623,280	-		IAI47_12425	0.67	-0.2
2,623,280	-		IAI47_12425	0.67	-0.5
2,623,280	-		IAI47_12425	0.67	-2.3
2,623,280	-		IAI47_12425	0.67	+1.3
2,623,282	+		IAI47_12425	0.67	-0.2
2,623,282	+		IAI47_12425	0.67	-0.8
2,623,282	+		IAI47_12425	0.67	+0.1
2,623,283	-		IAI47_12425	0.67	+0.3
2,623,283	-		IAI47_12425	0.67	-2.2
2,623,331	+		IAI47_12425	0.70	+0.1
2,623,331	+		IAI47_12425	0.70	+1.0
2,623,358	+		IAI47_12425	0.72	+0.2
2,623,358	+		IAI47_12425	0.72	+0.1
2,623,359	-		IAI47_12425	0.72	-0.2
2,623,359	-		IAI47_12425	0.72	-1.5
2,623,382	+		IAI47_12425	0.73	+0.2
2,623,383	-		IAI47_12425	0.74	+1.2
2,623,383	-		IAI47_12425	0.74	+1.1
2,623,436	-		IAI47_12425	0.77	+0.8
2,623,436	-				+1.8
2,623,436	-		IAI47_12425	0.77	-1.0
2,623,478	+		IAI47_12425	0.80	-1.9
2,623,531	+		IAI47_12425	0.83	+0.9
2,623,531	+		IAI47_12425	0.83	+0.1
2,623,532	-		IAI47_12425	0.83	+0.9
2,623,532	-		IAI47_12425	0.83	+0.6
2,623,532	-		IAI47_12425	0.83	-0.2
2,623,532	-		IAI47_12425	0.83	+1.4
2,623,536	+		IAI47_12425	0.84	-1.9
2,623,536	+		IAI47_12425	0.84	-0.3
2,623,536	+		IAI47_12425	0.84	+0.7
2,623,537	-		IAI47_12425	0.84	-1.8
2,623,537	-		IAI47_12425	0.84	-1.5
2,623,543	+		IAI47_12425	0.84	+0.6
2,623,543	+		IAI47_12425	0.84	+1.8
2,623,544	-		IAI47_12425	0.84	-1.8
2,623,544	-		IAI47_12425	0.84	+2.8
2,623,596	+		IAI47_12425	0.88	+0.3
2,623,622	+		IAI47_12425	0.89	-1.2
2,623,622	+		IAI47_12425	0.89	-2.1
2,623,623	-		IAI47_12425	0.89	-0.0
2,623,631	-				-0.5
2,623,680	-				+0.6
2,623,680	-				-0.8
2,623,686	+				-0.1
2,623,701	+				-1.0
2,623,750	+				+2.4
2,623,780	-				-1.8
2,623,783	+				+1.8
2,623,783	+				-1.5
2,623,783	+				-0.5
2,623,783	+				+2.1
2,623,783	+				-0.5
2,623,784	-				+1.1
2,623,784	-				+0.7
2,623,818	+				+1.0
2,623,818	+				+0.2
2,623,818	+				-1.0
2,623,819	-				-2.6
2,623,858	+		IAI47_12430	0.20	-0.3
2,623,858	+		IAI47_12430	0.20	+0.6
2,623,858	+		IAI47_12430	0.20	+0.9
2,623,858	+		IAI47_12430	0.20	+0.3
2,623,858	+		IAI47_12430	0.20	-1.1
2,623,858	+		IAI47_12430	0.20	+1.9
2,623,859	-		IAI47_12430	0.21	+0.8
2,623,859	-		IAI47_12430	0.21	+0.6
2,623,859	-		IAI47_12430	0.21	+0.3
2,623,859	-		IAI47_12430	0.21	+0.8
2,623,859	-		IAI47_12430	0.21	+1.3
2,623,861	+		IAI47_12430	0.22	+0.8
2,623,861	+		IAI47_12430	0.22	+0.5
2,623,861	+		IAI47_12430	0.22	-2.6
2,623,861	+		IAI47_12430	0.22	+0.7
2,623,862	-		IAI47_12430	0.22	-2.8
2,623,862	-		IAI47_12430	0.22	-0.1
2,623,875	+		IAI47_12430	0.29	+0.3
2,623,875	+		IAI47_12430	0.29	+0.8
2,623,876	-		IAI47_12430	0.29	+0.3
2,623,876	-		IAI47_12430	0.29	+2.3
2,623,876	-		IAI47_12430	0.29	+2.1
2,623,880	+		IAI47_12430	0.31	+0.4
2,623,880	+		IAI47_12430	0.31	-1.5
2,623,881	-		IAI47_12430	0.32	-1.7
2,623,890	+		IAI47_12430	0.36	-0.7
2,623,890	+		IAI47_12430	0.36	+1.4
2,623,891	-		IAI47_12430	0.37	-0.7
2,623,891	-		IAI47_12430	0.37	+0.7
2,623,945	+		IAI47_12430	0.64	-1.2
2,623,945	+		IAI47_12430	0.64	-2.8
2,623,945	+		IAI47_12430	0.64	-0.3
2,623,945	+		IAI47_12430	0.64	-1.1
2,623,946	-		IAI47_12430	0.64	+0.4
2,623,946	-		IAI47_12430	0.64	+0.3
2,623,946	-		IAI47_12430	0.64	-1.2
2,623,946	-		IAI47_12430	0.64	+0.2
2,623,946	-		IAI47_12430	0.64	+1.8
2,623,946	-		IAI47_12430	0.64	+0.6
2,623,946	-		IAI47_12430	0.64	+0.8
2,623,958	+		IAI47_12430	0.70	-0.3
2,623,959	-		IAI47_12430	0.71	-0.1
2,623,959	-		IAI47_12430	0.71	+0.6
2,623,971	-		IAI47_12430	0.77	-0.4
2,624,006	-				-2.1
2,624,006	-				+0.7
2,624,006	-				-1.0
2,624,017	+				+2.4
2,624,018	-				+2.9
2,624,030	+				+1.9
2,624,030	+				-1.5
2,624,030	+				+2.6
2,624,031	-				-0.8
2,624,031	-				-1.9
2,624,034	+				-1.2
2,624,034	+				-1.0
2,624,034	+				+2.7
2,624,034	+				-2.0
2,624,035	-				-0.1
2,624,035	-				-0.5
2,624,047	+				-1.4
2,624,048	-				+2.0
2,624,103	+				+0.6
2,624,103	+				+0.3
2,624,104	-				+0.7
2,624,104	-				+0.6
2,624,105	+				-2.1
2,624,105	+				-1.2
2,624,105	+				-0.6
2,624,105	+				+0.8
2,624,106	-				+1.9
2,624,106	-				+1.8
2,624,106	-				-0.4
2,624,106	-				+1.5
2,624,141	+				+1.2
2,624,141	+				+3.1
2,624,142	-				+0.8
2,624,142	-				-0.6
2,624,142	-				+0.8
2,624,142	-				+1.5
2,624,173	+				+0.4
2,624,173	+				-2.1
2,624,173	+				-1.0
2,624,174	-				-2.7
2,624,174	-				+1.0
2,624,175	+				-0.6
2,624,175	+				-2.0
2,624,175	+				+1.5
2,624,176	-				+0.6
2,624,176	-				+1.7
2,624,180	+				+0.6
2,624,180	+				+1.2
2,624,180	+				+0.3
2,624,180	+				-1.5
2,624,180	+				-1.8
2,624,180	+				+1.1
2,624,181	-				-2.0
2,624,191	+				+0.7
2,624,191	+				+1.5
2,624,192	-				-0.7
2,624,192	-				-2.4
2,624,207	+				+0.0
2,624,208	-				-0.6
2,624,208	-				-1.2
2,624,208	-				-0.3
2,624,208	-				+0.5
2,624,208	-				+1.1
2,624,219	+				+0.5
2,624,219	+				-0.6
2,624,219	+				+0.7
2,624,220	-				-2.2
2,624,220	-				+2.8
2,624,220	-				-0.1
2,624,220	-				-0.4
2,624,226	+				-0.0
2,624,226	+				+0.9
2,624,226	+				+1.2
2,624,226	+				+1.2
2,624,226	+				-0.8
2,624,226	+				-2.2
2,624,227	-				-0.0
2,624,227	-				+0.3
2,624,227	-				+0.2
2,624,247	-		IAI47_12435	0.18	-0.8
2,624,248	+		IAI47_12435	0.19	-0.5
2,624,248	+		IAI47_12435	0.19	-0.2
2,624,248	+		IAI47_12435	0.19	-0.5
2,624,248	+		IAI47_12435	0.19	-1.8
2,624,248	+		IAI47_12435	0.19	-1.8
2,624,249	-		IAI47_12435	0.19	-0.9
2,624,403	+				+2.6
2,624,403	+				-2.5
2,624,403	+				+1.1
2,624,404	-				-0.2
2,624,404	-				+0.6
2,624,563	+		IAI47_12440	0.15	-0.8
2,624,564	-		IAI47_12440	0.15	-1.4
2,624,577	+		IAI47_12440	0.17	+0.0
2,624,578	-		IAI47_12440	0.17	-0.2
2,624,578	-		IAI47_12440	0.17	+3.3
2,624,578	-		IAI47_12440	0.17	-0.9
2,624,588	+		IAI47_12440	0.18	-0.9
2,624,607	+		IAI47_12440	0.20	+0.7
2,624,607	+		IAI47_12440	0.20	+1.9
2,624,619	+		IAI47_12440	0.22	-0.7
2,624,619	+		IAI47_12440	0.22	-1.4
2,624,619	+		IAI47_12440	0.22	-1.7
2,624,620	-		IAI47_12440	0.22	+0.1
2,624,620	-		IAI47_12440	0.22	+0.1
2,624,745	+		IAI47_12440	0.36	-2.3
2,624,745	+		IAI47_12440	0.36	+0.1
2,624,746	-		IAI47_12440	0.37	+1.1
2,624,792	+		IAI47_12440	0.42	-0.8
2,624,793	-		IAI47_12440	0.42	+0.4
2,624,857	+		IAI47_12440	0.50	-0.2
2,624,857	+		IAI47_12440	0.50	-0.5
2,624,858	-		IAI47_12440	0.50	-2.8
2,624,858	-		IAI47_12440	0.50	+0.5
2,624,870	+		IAI47_12440	0.51	-1.5
2,624,870	+		IAI47_12440	0.51	+0.9
2,624,871	-		IAI47_12440	0.51	+1.1
2,624,871	-		IAI47_12440	0.51	-2.2
2,624,911	-		IAI47_12440	0.56	-1.7
2,624,944	+		IAI47_12440	0.60	-0.7
2,624,944	+		IAI47_12440	0.60	+0.9
2,624,945	-		IAI47_12440	0.60	+0.4
2,624,956	+		IAI47_12440	0.61	+0.1
2,624,956	+		IAI47_12440	0.61	-2.2
2,624,956	+		IAI47_12440	0.61	-1.3
2,624,956	+		IAI47_12440	0.61	-0.7
2,624,956	+		IAI47_12440	0.61	+1.9
2,624,956	+		IAI47_12440	0.61	-0.4
2,624,957	-		IAI47_12440	0.61	+1.3
2,624,957	-		IAI47_12440	0.61	+2.3
2,624,957	-		IAI47_12440	0.61	+1.0
2,624,957	-		IAI47_12440	0.61	+2.4
2,625,030	+		IAI47_12440	0.70	-1.1
2,625,031	-		IAI47_12440	0.70	-0.2
2,625,031	-		IAI47_12440	0.70	-0.7
2,625,036	+		IAI47_12440	0.71	-2.5
2,625,036	+		IAI47_12440	0.71	+0.9
2,625,036	+		IAI47_12440	0.71	-1.7
2,625,036	+		IAI47_12440	0.71	-1.2
2,625,037	-		IAI47_12440	0.71	-2.7
2,625,037	-		IAI47_12440	0.71	+0.4
2,625,052	+		IAI47_12440	0.73	+1.9
2,625,058	+		IAI47_12440	0.73	-0.1
2,625,058	+		IAI47_12440	0.73	-1.7
2,625,058	+		IAI47_12440	0.73	+0.8
2,625,058	+		IAI47_12440	0.73	+1.5
2,625,058	+		IAI47_12440	0.73	-0.3
2,625,059	-		IAI47_12440	0.74	-1.8
2,625,059	-		IAI47_12440	0.74	-1.2
2,625,059	-		IAI47_12440	0.74	-0.8
2,625,059	-		IAI47_12440	0.74	+1.0
2,625,059	-		IAI47_12440	0.74	+0.4
2,625,061	+		IAI47_12440	0.74	-0.2
2,625,062	-		IAI47_12440	0.74	-1.7
2,625,062	-		IAI47_12440	0.74	-0.9
2,625,144	+		IAI47_12440	0.84	+0.6
2,625,144	+		IAI47_12440	0.84	-0.5
2,625,145	-		IAI47_12440	0.84	-1.4
2,625,145	-		IAI47_12440	0.84	-1.7
2,625,159	+		IAI47_12440	0.85	-0.5
2,625,159	+		IAI47_12440	0.85	+3.3
2,625,159	+		IAI47_12440	0.85	-2.8
2,625,159	+		IAI47_12440	0.85	+0.9
2,625,159	+		IAI47_12440	0.85	+0.9
2,625,160	-		IAI47_12440	0.85	-0.4
2,625,160	-		IAI47_12440	0.85	+4.0
2,625,160	-		IAI47_12440	0.85	-0.3
2,625,160	-		IAI47_12440	0.85	-2.3
2,625,160	-		IAI47_12440	0.85	-2.5
2,625,160	-		IAI47_12440	0.85	+0.2
2,625,160	-		IAI47_12440	0.85	+0.8
2,625,197	+		IAI47_12440	0.90	-1.5
2,625,198	-				-1.7
2,625,225	+				-0.5
2,625,225	+				+0.9
2,625,232	-				+0.4
2,625,241	+				-1.1
2,625,242	-				+1.3
2,625,310	+				+2.3
2,625,311	-				+2.7
2,625,311	-				-0.8
2,625,311	-				-1.3
2,625,311	-				+0.8
2,625,313	+				+1.6
2,625,313	+				-1.8
2,625,313	+				-0.7
2,625,326	-				-1.1
2,625,354	-				+0.6
2,625,396	+				-1.8
2,625,396	+				-0.6
2,625,397	-				+0.4