Strain Fitness in Pantoea sp. MT58 around IAI47_07945

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,681,461	+		IAI47_07940	0.21	-0.5
1,681,462	-		IAI47_07940	0.21	-2.3
1,681,462	-		IAI47_07940	0.21	-2.3
1,681,462	-		IAI47_07940	0.21	-0.0
1,681,462	-		IAI47_07940	0.21	+0.2
1,681,705	+		IAI47_07940	0.52	-0.7
1,681,706	-		IAI47_07940	0.52	+3.3
1,681,805	+		IAI47_07940	0.65	-0.7
1,681,805	+		IAI47_07940	0.65	-0.3
1,681,806	-		IAI47_07940	0.65	-1.6
1,681,806	-		IAI47_07940	0.65	+0.2
1,681,806	-		IAI47_07940	0.65	+1.3
1,681,815	+		IAI47_07940	0.66	-0.4
1,681,816	-		IAI47_07940	0.66	-0.3
1,681,816	-		IAI47_07940	0.66	-0.6
1,681,819	-		IAI47_07940	0.67	+2.2
1,681,819	-		IAI47_07940	0.67	+1.4
1,681,819	-		IAI47_07940	0.67	-0.8
1,681,855	+		IAI47_07940	0.71	-0.1
1,681,855	+		IAI47_07940	0.71	+2.5
1,681,878	+		IAI47_07940	0.74	+0.5
1,681,878	+		IAI47_07940	0.74	+0.8
1,681,878	+		IAI47_07940	0.74	-3.1
1,681,920	+		IAI47_07940	0.79	-0.3
1,682,012	+				-0.3
1,682,012	+				-0.8
1,682,012	+				+0.6
1,682,012	+				+1.2
1,682,012	+				-0.3
1,682,013	-				+1.7
1,682,016	+				+0.7
1,682,016	+				-2.8
1,682,016	+				+0.4
1,682,016	+				-1.1
1,682,016	+				-0.6
1,682,016	+				-0.1
1,682,016	+				-1.1
1,682,016	+				-1.1
1,682,016	+				+0.2
1,682,016	+				+0.7
1,682,016	+				+3.2
1,682,016	+				+1.0
1,682,016	+				-0.5
1,682,016	+				+0.2
1,682,017	-				+1.5
1,682,017	-				+0.6
1,682,017	-				-0.6
1,682,017	-				-2.2
1,682,017	-				+0.7
1,682,017	-				-0.2
1,682,017	-				-0.3
1,682,017	-				+1.0
1,682,026	+				-1.7
1,682,026	+				-0.7
1,682,026	+				-1.3
1,682,026	+				+0.2
1,682,027	-				+1.5
1,682,027	-				+1.7
1,682,027	-				-1.2
1,682,027	-				+1.7
1,682,029	+				-1.8
1,682,030	-				+0.2
1,682,030	-				-1.7
1,682,050	-				-1.6
1,682,053	-				-0.1
1,682,085	-				+0.8
1,682,085	-				+1.8
1,682,134	+				+2.4
1,682,134	+				+0.2
1,682,134	+				-1.4
1,682,135	-				-1.4
1,682,136	+				+0.7
1,682,136	+				+1.0
1,682,137	-				+0.6
1,682,137	-				+1.5
1,682,137	-				+0.0
1,682,137	-				-1.3
1,682,145	-				-0.3
1,682,197	+				+1.7
1,682,213	+				-1.2
1,682,288	+				+1.0
1,682,288	+				+1.4
1,682,289	-				+0.4
1,682,318	+				+3.8
1,682,345	+				-2.1
1,682,346	-				+0.7
1,682,350	+				-1.3
1,682,350	+				+2.7
1,682,350	+				-0.9
1,682,351	-				+1.9
1,682,367	-				+1.1
1,682,367	-				+0.9
1,682,382	+				+1.0
1,682,383	-				+1.3
1,682,504	+		IAI47_07945	0.24	+0.7
1,682,504	+		IAI47_07945	0.24	-1.1
1,682,559	+		IAI47_07945	0.49	+1.2
1,682,560	-		IAI47_07945	0.49	-0.6
1,682,560	-		IAI47_07945	0.49	+0.5
1,682,560	-		IAI47_07945	0.49	+0.7
1,682,560	-		IAI47_07945	0.49	-2.7
1,682,560	-		IAI47_07945	0.49	+0.7
1,682,561	+		IAI47_07945	0.50	-0.3
1,682,561	+		IAI47_07945	0.50	-2.1
1,682,561	+		IAI47_07945	0.50	+0.3
1,682,561	+		IAI47_07945	0.50	-0.1
1,682,561	+		IAI47_07945	0.50	-0.5
1,682,561	+		IAI47_07945	0.50	-0.8
1,682,561	+		IAI47_07945	0.50	-0.8
1,682,562	-		IAI47_07945	0.50	-0.8
1,682,562	-		IAI47_07945	0.50	-2.8
1,682,562	-		IAI47_07945	0.50	+0.8
1,682,562	-		IAI47_07945	0.50	+0.9
1,682,562	-		IAI47_07945	0.50	-0.8
1,682,562	-		IAI47_07945	0.50	-2.0
1,682,596	-		IAI47_07945	0.66	-2.7
1,682,603	-		IAI47_07945	0.69	+0.9
1,682,605	+		IAI47_07945	0.70	-1.7
1,682,605	+		IAI47_07945	0.70	+0.2
1,682,606	-		IAI47_07945	0.70	+0.5
1,682,606	-		IAI47_07945	0.70	-0.5
1,682,606	-		IAI47_07945	0.70	-1.1
1,682,606	-		IAI47_07945	0.70	+1.3
1,682,626	+		IAI47_07945	0.79	-1.6
1,682,626	+		IAI47_07945	0.79	-3.5
1,682,697	+				-1.5
1,682,697	+				-0.7
1,682,697	+				+1.5
1,682,697	+				+0.8
1,682,697	+				-1.2
1,682,704	+				+1.0
1,682,704	+				-0.5
1,682,705	-				+0.3
1,682,705	-				+0.5
1,682,706	+				+2.3
1,682,706	+				+0.6
1,682,706	+				-0.8
1,682,706	+				-2.5
1,682,706	+				+1.6
1,682,706	+				+1.2
1,682,706	+				+0.2
1,682,706	+				+3.5
1,682,707	-				+1.3
1,682,707	-				+1.3
1,682,707	-				-0.2
1,682,707	-				-3.0
1,682,707	-				+1.3
1,682,707	-				+0.9
1,682,707	-				-0.7
1,682,784	+				+0.1
1,682,784	+				-0.3
1,682,785	-				+2.7
1,682,785	-				+0.7
1,682,785	-				+3.5
1,682,805	+				-0.2
1,682,805	+				-1.6
1,682,806	-				-0.7
1,682,806	-				+0.1
1,682,832	+				+1.2
1,682,832	+				+0.2
1,682,833	-				-0.1
1,682,833	-				+0.3
1,682,833	-				+4.2
1,682,833	-				-1.4
1,682,833	-				+2.7
1,682,834	+				-2.1
1,682,834	+				+1.3
1,682,870	+				+0.0
1,682,870	+				+0.2
1,682,875	+				-1.6
1,682,876	-				+1.7
1,682,876	-				-1.7
1,682,904	+				+0.6
1,682,905	-				-1.2
1,682,941	+				+1.2
1,682,941	+				-0.1
1,682,941	+				-0.6
1,682,942	-				+1.7
1,682,942	-				+0.7
1,682,942	-				+0.3
1,682,948	+				+1.1
1,682,952	-				-2.0
1,682,952	-				-0.4
1,682,964	+				+1.8
1,682,970	+				+0.8
1,682,971	-				+0.7
1,682,975	-				+0.6
1,683,004	+		IAI47_07950	0.11	+2.6
1,683,004	+		IAI47_07950	0.11	+3.2
1,683,004	+		IAI47_07950	0.11	+2.7
1,683,004	+		IAI47_07950	0.11	-2.8
1,683,016	-		IAI47_07950	0.18	-1.4
1,683,040	+		IAI47_07950	0.33	-2.4
1,683,040	+		IAI47_07950	0.33	+1.7
1,683,040	+		IAI47_07950	0.33	-0.6
1,683,041	-		IAI47_07950	0.34	+1.1
1,683,041	-		IAI47_07950	0.34	-2.0
1,683,098	+		IAI47_07950	0.70	+1.5
1,683,098	+		IAI47_07950	0.70	+2.2
1,683,098	+		IAI47_07950	0.70	+0.7
1,683,098	+		IAI47_07950	0.70	-0.4
1,683,099	-		IAI47_07950	0.70	+0.3
1,683,099	-		IAI47_07950	0.70	+2.3
1,683,099	-		IAI47_07950	0.70	-0.0
1,683,099	-		IAI47_07950	0.70	-0.6
1,683,099	-		IAI47_07950	0.70	-1.5
1,683,099	-		IAI47_07950	0.70	-1.3
1,683,099	-		IAI47_07950	0.70	+0.3
1,683,100	+		IAI47_07950	0.71	-0.8
1,683,101	-		IAI47_07950	0.72	-0.4
1,683,101	-		IAI47_07950	0.72	+0.3
1,683,130	+				-1.4
1,683,180	+				-1.8
1,683,189	+				+0.2
1,683,189	+				+1.3
1,683,190	-				+1.5
1,683,192	+				+3.4
1,683,192	+				-1.0
1,683,192	+				+0.3
1,683,192	+				-0.7
1,683,193	-				-2.6
1,683,193	-				+1.6
1,683,193	-				+1.1
1,683,193	-				+2.5
1,683,193	-				-0.8
1,683,215	+				-0.2
1,683,215	+				-0.3
1,683,215	+				+1.7
1,683,215	+				-1.1
1,683,216	-				-1.8
1,683,216	-				+0.3
1,683,300	+		IAI47_07955	0.47	-1.0
1,683,300	+		IAI47_07955	0.47	-1.8
1,683,301	-		IAI47_07955	0.48	+1.0
1,683,301	-		IAI47_07955	0.48	+1.7
1,683,309	-		IAI47_07955	0.52	+1.3
1,683,337	-		IAI47_07955	0.66	-1.3
1,683,349	-		IAI47_07955	0.72	-0.6
1,683,435	+				-2.1
1,683,435	+				+1.7
1,683,436	-				-0.1
1,683,436	-				+0.7
1,683,511	+				+1.1
1,683,511	+				-1.6
1,683,511	+				-1.4
1,683,511	+				+1.7
1,683,511	+				-0.6
1,683,512	-				-0.5
1,683,512	-				+2.5
1,683,512	-				-0.3
1,683,512	-				+0.4
1,683,512	-				+0.2
1,683,527	+				+2.3
1,683,527	+				-0.1
1,683,527	+				+0.7
1,683,528	-				+1.0
1,683,528	-				+1.9
1,683,528	-				+3.2
1,683,528	-				+3.9
1,683,528	-				-1.3
1,683,654	+				-1.4
1,683,654	+				-2.4
1,683,655	-				+0.6
1,683,655	-				+0.5
1,683,655	-				-0.8
1,683,655	-				+0.6