Strain Fitness in Pantoea sp. MT58 around IAI47_06680

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,390,174	+		IAI47_06670	0.53	-0.7
1,390,175	-		IAI47_06670	0.53	-2.3
1,390,175	-		IAI47_06670	0.53	-0.1
1,390,175	-		IAI47_06670	0.53	+1.8
1,390,175	-		IAI47_06670	0.53	-2.5
1,390,175	-		IAI47_06670	0.53	+0.2
1,390,205	+		IAI47_06670	0.56	+0.2
1,390,206	-		IAI47_06670	0.56	+1.3
1,390,206	-		IAI47_06670	0.56	-1.1
1,390,226	+		IAI47_06670	0.58	+0.3
1,390,318	+		IAI47_06670	0.66	+0.0
1,390,318	+		IAI47_06670	0.66	+0.9
1,390,318	+		IAI47_06670	0.66	-0.2
1,390,319	-		IAI47_06670	0.66	-1.5
1,390,319	-		IAI47_06670	0.66	-1.2
1,390,321	+		IAI47_06670	0.67	-0.7
1,390,321	+		IAI47_06670	0.67	+2.0
1,390,321	+		IAI47_06670	0.67	+0.1
1,390,321	+		IAI47_06670	0.67	+2.8
1,390,321	+		IAI47_06670	0.67	-0.5
1,390,322	-		IAI47_06670	0.67	+0.2
1,390,322	-		IAI47_06670	0.67	-0.2
1,390,322	-		IAI47_06670	0.67	+0.5
1,390,322	-		IAI47_06670	0.67	+0.9
1,390,322	-		IAI47_06670	0.67	-1.8
1,390,391	+		IAI47_06670	0.73	-0.1
1,390,391	+		IAI47_06670	0.73	+0.8
1,390,391	+		IAI47_06670	0.73	+0.1
1,390,391	+		IAI47_06670	0.73	-0.6
1,390,391	+		IAI47_06670	0.73	-0.8
1,390,392	-		IAI47_06670	0.73	-1.0
1,390,392	-		IAI47_06670	0.73	+0.7
1,390,392	-		IAI47_06670	0.73	+2.9
1,390,452	-		IAI47_06670	0.79	-1.2
1,390,486	+		IAI47_06670	0.82	-0.1
1,390,486	+		IAI47_06670	0.82	-0.5
1,390,486	+		IAI47_06670	0.82	-0.1
1,390,486	+		IAI47_06670	0.82	+1.1
1,390,487	-		IAI47_06670	0.82	+0.2
1,390,487	-		IAI47_06670	0.82	+1.7
1,390,488	+		IAI47_06670	0.82	-1.1
1,390,488	+		IAI47_06670	0.82	+1.4
1,390,489	-		IAI47_06670	0.83	-1.9
1,390,489	-		IAI47_06670	0.83	-0.4
1,390,489	-		IAI47_06670	0.83	+0.5
1,390,495	+		IAI47_06670	0.83	+2.6
1,390,496	-		IAI47_06670	0.83	-0.2
1,390,633	+				-2.2
1,390,633	+				-1.6
1,390,633	+				+1.4
1,390,634	-				+1.3
1,390,634	-				+1.8
1,390,652	-				-1.0
1,390,783	+				-2.0
1,390,783	+				-0.2
1,390,783	+				+0.6
1,390,784	-				-2.7
1,390,784	-				+2.0
1,390,784	-				+1.1
1,390,906	-		IAI47_06675	0.34	+2.3
1,391,027	+		IAI47_06675	0.66	+2.8
1,391,028	-		IAI47_06675	0.66	+0.5
1,391,028	-		IAI47_06675	0.66	-2.8
1,391,028	-		IAI47_06675	0.66	-0.5
1,391,028	-		IAI47_06675	0.66	-0.1
1,391,028	-		IAI47_06675	0.66	-1.3
1,391,119	+				-1.0
1,391,119	+				+3.1
1,391,119	+				+0.3
1,391,127	+				+0.2
1,391,127	+				+1.1
1,391,127	+				+1.4
1,391,127	+				-1.4
1,391,128	-				+1.2
1,391,128	-				-0.5
1,391,128	-				-1.2
1,391,128	-				-1.0
1,391,128	-				-0.4
1,391,151	+				-1.4
1,391,151	+				+1.1
1,391,151	+				-1.4
1,391,151	+				-1.6
1,391,171	+				+0.6
1,391,171	+				-1.1
1,391,171	+				+2.8
1,391,171	+				-1.2
1,391,171	+				+0.1
1,391,171	+				+1.6
1,391,172	-				+1.3
1,391,172	-				+1.8
1,391,172	-				-2.4
1,391,172	-				+0.1
1,391,172	-				-0.5
1,391,172	-				-2.2
1,391,338	+		IAI47_06680	0.20	-2.6
1,391,338	+		IAI47_06680	0.20	-1.2
1,391,338	+		IAI47_06680	0.20	+2.1
1,391,339	-		IAI47_06680	0.20	-1.1
1,391,362	-		IAI47_06680	0.23	-0.0
1,391,462	+		IAI47_06680	0.34	-2.1
1,391,462	+		IAI47_06680	0.34	+1.5
1,391,462	+		IAI47_06680	0.34	+0.9
1,391,463	-		IAI47_06680	0.35	-4.1
1,391,463	-		IAI47_06680	0.35	-1.8
1,391,463	-		IAI47_06680	0.35	-1.2
1,391,466	+		IAI47_06680	0.35	-0.8
1,391,466	+		IAI47_06680	0.35	+2.6
1,391,466	+		IAI47_06680	0.35	-0.5
1,391,466	+		IAI47_06680	0.35	+3.6
1,391,467	-		IAI47_06680	0.35	-1.7
1,391,467	-		IAI47_06680	0.35	-2.0
1,391,493	+		IAI47_06680	0.38	-0.0
1,391,769	+		IAI47_06680	0.70	-1.0
1,391,769	+		IAI47_06680	0.70	-0.2
1,391,770	-		IAI47_06680	0.70	-1.2
1,391,959	-				-0.1
1,391,984	+				-0.4
1,391,984	+				+1.3
1,391,984	+				+0.5
1,391,984	+				-2.8
1,391,984	+				+0.7
1,391,984	+				-1.2
1,391,985	-				+0.2
1,392,015	+				-0.5
1,392,016	-				-1.5
1,392,038	-				-0.5
1,392,060	+				-0.1
1,392,061	-				-0.2
1,392,065	+				+3.0
1,392,065	+				-2.2
1,392,065	+				+0.4
1,392,065	+				+3.4
1,392,065	+				+1.8
1,392,065	+				+1.6
1,392,065	+				+1.9
1,392,065	+				+1.6
1,392,065	+				+1.3
1,392,066	-				+1.5
1,392,066	-				-0.2
1,392,066	-				+0.5
1,392,066	-				-0.6
1,392,066	-				-0.9
1,392,066	-				-2.1
1,392,067	+				-0.5
1,392,067	+				-1.3
1,392,068	-				-0.5
1,392,068	-				+0.6
1,392,085	+				-1.5
1,392,085	+				-2.7
1,392,085	+				+1.2
1,392,085	+				+1.1
1,392,085	+				-3.9
1,392,085	+				-1.0
1,392,085	+				-0.7
1,392,086	-				+1.1
1,392,086	-				+0.2
1,392,086	-				-0.3
1,392,086	-				+0.2
1,392,086	-				-0.3
1,392,087	+				+1.0
1,392,087	+				+0.5
1,392,087	+				-0.2
1,392,087	+				+1.6
1,392,088	-				-0.4
1,392,088	-				-0.3
1,392,107	+				+0.7
1,392,107	+				-0.2
1,392,136	-				+0.1
1,392,136	-				-0.8
1,392,152	+				-2.5
1,392,152	+				-0.8
1,392,152	+				-1.5
1,392,152	+				-2.8
1,392,152	+				-0.8
1,392,153	-				+2.3
1,392,153	-				+1.9
1,392,153	-				+2.1
1,392,153	-				-0.5
1,392,153	-				-0.6
1,392,153	-				-0.4
1,392,153	-				-0.7
1,392,153	-				-0.7
1,392,164	+				-2.3
1,392,164	+				+0.3
1,392,164	+				-1.5
1,392,165	-				+1.1
1,392,165	-				+0.1
1,392,165	-				+0.9
1,392,165	-				-1.0
1,392,184	+				-0.9
1,392,185	-				-2.9
1,392,197	-				+0.3
1,392,309	+		IAI47_06685	0.11	-2.5
1,392,309	+		IAI47_06685	0.11	+0.3
1,392,309	+		IAI47_06685	0.11	+0.1
1,392,309	+		IAI47_06685	0.11	-0.2
1,392,309	+		IAI47_06685	0.11	-0.5
1,392,309	+		IAI47_06685	0.11	-1.1
1,392,310	-		IAI47_06685	0.11	-0.2
1,392,310	-		IAI47_06685	0.11	+0.2
1,392,310	-		IAI47_06685	0.11	+0.3
1,392,310	-		IAI47_06685	0.11	-1.3
1,392,310	-		IAI47_06685	0.11	-3.5
1,392,310	-		IAI47_06685	0.11	-0.4
1,392,310	-		IAI47_06685	0.11	-1.7
1,392,310	-		IAI47_06685	0.11	+1.3
1,392,310	-		IAI47_06685	0.11	+3.9
1,392,311	+		IAI47_06685	0.11	-1.0
1,392,311	+		IAI47_06685	0.11	+0.2
1,392,311	+		IAI47_06685	0.11	+2.2
1,392,311	+		IAI47_06685	0.11	+2.6
1,392,311	+				+1.8
1,392,311	+		IAI47_06685	0.11	-0.8
1,392,311	+		IAI47_06685	0.11	-0.2
1,392,311	+		IAI47_06685	0.11	+1.2
1,392,311	+		IAI47_06685	0.11	-2.4
1,392,311	+		IAI47_06685	0.11	+1.2
1,392,311	+		IAI47_06685	0.11	-2.6
1,392,311	+		IAI47_06685	0.11	+1.5
1,392,312	-		IAI47_06685	0.11	-0.2
1,392,312	-		IAI47_06685	0.11	-0.1
1,392,312	-		IAI47_06685	0.11	-1.5
1,392,312	-		IAI47_06685	0.11	-0.8
1,392,312	-		IAI47_06685	0.11	-1.4
1,392,312	-		IAI47_06685	0.11	-1.2
1,392,333	+		IAI47_06685	0.13	+0.9
1,392,334	-		IAI47_06685	0.13	+1.4
1,392,371	+		IAI47_06685	0.15	+2.3
1,392,371	+		IAI47_06685	0.15	-0.5
1,392,371	+		IAI47_06685	0.15	+2.8
1,392,372	-		IAI47_06685	0.15	+3.3
1,392,372	-		IAI47_06685	0.15	+1.1
1,392,399	+		IAI47_06685	0.17	+1.6
1,392,400	-		IAI47_06685	0.17	+1.3
1,392,411	+		IAI47_06685	0.18	-0.7
1,392,411	+		IAI47_06685	0.18	+1.5
1,392,411	+		IAI47_06685	0.18	-0.1
1,392,412	-		IAI47_06685	0.18	+0.2
1,392,412	-		IAI47_06685	0.18	-1.0
1,392,412	-		IAI47_06685	0.18	+1.8
1,392,412	-		IAI47_06685	0.18	+1.0
1,392,412	-		IAI47_06685	0.18	-1.2
1,392,450	+				+1.8
1,392,451	-		IAI47_06685	0.21	+0.9
1,392,451	-		IAI47_06685	0.21	+0.3
1,392,451	-		IAI47_06685	0.21	+0.9
1,392,456	+		IAI47_06685	0.21	+0.0
1,392,513	+		IAI47_06685	0.25	-0.5
1,392,514	-		IAI47_06685	0.25	+1.8
1,392,514	-		IAI47_06685	0.25	+0.2
1,392,514	-		IAI47_06685	0.25	-1.5
1,392,568	+		IAI47_06685	0.29	-0.1
1,392,568	+		IAI47_06685	0.29	-1.7
1,392,578	+		IAI47_06685	0.29	-1.5
1,392,578	+		IAI47_06685	0.29	+1.4
1,392,579	-		IAI47_06685	0.29	+0.8
1,392,579	-		IAI47_06685	0.29	+2.4
1,392,579	-		IAI47_06685	0.29	+1.8
1,392,582	+		IAI47_06685	0.30	+0.7
1,392,582	+		IAI47_06685	0.30	-0.7
1,392,582	+		IAI47_06685	0.30	+0.2
1,392,582	+		IAI47_06685	0.30	+2.4
1,392,582	+		IAI47_06685	0.30	+3.0
1,392,582	+		IAI47_06685	0.30	+2.0
1,392,583	-		IAI47_06685	0.30	+0.7
1,392,583	-		IAI47_06685	0.30	+0.4
1,392,583	-		IAI47_06685	0.30	+2.4
1,392,583	-		IAI47_06685	0.30	+1.4
1,392,583	-		IAI47_06685	0.30	-1.2
1,392,583	-		IAI47_06685	0.30	-0.4
1,392,615	+		IAI47_06685	0.32	+1.1
1,392,615	+		IAI47_06685	0.32	+1.9
1,392,616	-		IAI47_06685	0.32	-0.1
1,392,650	+		IAI47_06685	0.34	-1.7
1,392,651	-		IAI47_06685	0.34	-1.9
1,392,656	+		IAI47_06685	0.35	-3.4
1,392,689	+		IAI47_06685	0.37	-1.2
1,392,690	-		IAI47_06685	0.37	-0.2
1,392,690	-		IAI47_06685	0.37	+1.4
1,392,690	-		IAI47_06685	0.37	-1.5
1,392,719	+		IAI47_06685	0.39	-0.2
1,392,719	+		IAI47_06685	0.39	+1.1
1,392,720	-		IAI47_06685	0.39	+2.6
1,392,720	-		IAI47_06685	0.39	+0.9
1,392,720	-		IAI47_06685	0.39	+1.3
1,392,720	-		IAI47_06685	0.39	+0.2
1,392,858	-		IAI47_06685	0.48	-2.1
1,392,858	-		IAI47_06685	0.48	-2.0
1,392,903	+		IAI47_06685	0.52	+1.4
1,392,903	+		IAI47_06685	0.52	-0.6
1,392,903	+		IAI47_06685	0.52	+0.5
1,392,903	+		IAI47_06685	0.52	-0.2
1,392,903	+		IAI47_06685	0.52	-2.3
1,392,903	+		IAI47_06685	0.52	-0.8
1,392,903	+		IAI47_06685	0.52	-0.7
1,392,904	-		IAI47_06685	0.52	-2.5
1,392,904	-		IAI47_06685	0.52	-0.1
1,392,904	-		IAI47_06685	0.52	+2.9
1,392,904	-		IAI47_06685	0.52	-1.5
1,392,904	-		IAI47_06685	0.52	-1.5
1,392,904	-		IAI47_06685	0.52	+2.0
1,392,904	-		IAI47_06685	0.52	-1.2
1,392,904	-		IAI47_06685	0.52	+0.1
1,392,904	-		IAI47_06685	0.52	-0.4
1,392,904	-		IAI47_06685	0.52	-2.1
1,392,924	-		IAI47_06685	0.53	-0.6
1,392,924	-		IAI47_06685	0.53	-2.7
1,392,924	-		IAI47_06685	0.53	-1.7
1,392,980	+		IAI47_06685	0.57	-2.1
1,392,981	-		IAI47_06685	0.57	-0.3