Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04680 and IAI47_04685 overlap by 59 nucleotides IAI47_04685 and IAI47_04690 are separated by 328 nucleotides IAI47_04690 and IAI47_04695 are separated by 715 nucleotides
IAI47_04680: IAI47_04680 - hypothetical protein, at 987,944 to 988,498
_04680
IAI47_04685: IAI47_04685 - hypothetical protein, at 988,440 to 988,592
_04685
IAI47_04690: IAI47_04690 - hypothetical protein, at 988,921 to 989,565
_04690
IAI47_04695: IAI47_04695 - hypothetical protein, at 990,281 to 990,745
_04695
Position (kb) 988
989
990 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 987.945 kb on + strand at 987.945 kb on + strand at 987.945 kb on + strand at 988.065 kb on + strand, within IAI47_04680 at 988.065 kb on + strand, within IAI47_04680 at 988.065 kb on + strand, within IAI47_04680 at 988.065 kb on + strand, within IAI47_04680 at 988.065 kb on + strand, within IAI47_04680 at 988.065 kb on + strand, within IAI47_04680 at 988.065 kb on + strand, within IAI47_04680 at 988.066 kb on - strand, within IAI47_04680 at 988.076 kb on - strand, within IAI47_04680 at 988.145 kb on + strand, within IAI47_04680 at 988.146 kb on - strand, within IAI47_04680 at 988.146 kb on - strand, within IAI47_04680 at 988.159 kb on + strand, within IAI47_04680 at 988.160 kb on - strand, within IAI47_04680 at 988.160 kb on - strand, within IAI47_04680 at 988.160 kb on - strand, within IAI47_04680 at 988.160 kb on - strand, within IAI47_04680 at 988.201 kb on - strand, within IAI47_04680 at 988.246 kb on - strand, within IAI47_04680 at 988.246 kb on - strand, within IAI47_04680 at 988.250 kb on - strand, within IAI47_04680 at 988.251 kb on + strand, within IAI47_04680 at 988.251 kb on + strand, within IAI47_04680 at 988.251 kb on + strand, within IAI47_04680 at 988.252 kb on - strand, within IAI47_04680 at 988.276 kb on + strand, within IAI47_04680 at 988.277 kb on - strand, within IAI47_04680 at 988.280 kb on - strand, within IAI47_04680 at 988.280 kb on - strand, within IAI47_04680 at 988.280 kb on - strand, within IAI47_04680 at 988.292 kb on - strand, within IAI47_04680 at 988.292 kb on - strand, within IAI47_04680 at 988.292 kb on - strand, within IAI47_04680 at 988.293 kb on + strand, within IAI47_04680 at 988.293 kb on + strand, within IAI47_04680 at 988.293 kb on + strand, within IAI47_04680 at 988.293 kb on + strand, within IAI47_04680 at 988.294 kb on - strand, within IAI47_04680 at 988.294 kb on - strand, within IAI47_04680 at 988.294 kb on - strand, within IAI47_04680 at 988.294 kb on - strand, within IAI47_04680 at 988.294 kb on - strand, within IAI47_04680 at 988.294 kb on - strand, within IAI47_04680 at 988.294 kb on - strand, within IAI47_04680 at 988.310 kb on - strand, within IAI47_04680 at 988.334 kb on + strand, within IAI47_04680 at 988.334 kb on + strand, within IAI47_04680 at 988.334 kb on + strand, within IAI47_04680 at 988.334 kb on + strand, within IAI47_04680 at 988.335 kb on - strand, within IAI47_04680 at 988.335 kb on - strand, within IAI47_04680 at 988.335 kb on - strand, within IAI47_04680 at 988.337 kb on + strand, within IAI47_04680 at 988.338 kb on - strand, within IAI47_04680 at 988.345 kb on + strand, within IAI47_04680 at 988.345 kb on + strand, within IAI47_04680 at 988.346 kb on - strand, within IAI47_04680 at 988.397 kb on - strand, within IAI47_04680 at 988.427 kb on + strand, within IAI47_04680 at 988.428 kb on - strand, within IAI47_04680 at 988.461 kb on - strand at 988.462 kb on + strand at 988.462 kb on + strand at 988.462 kb on + strand at 988.462 kb on + strand at 988.463 kb on - strand at 988.463 kb on - strand at 988.463 kb on - strand at 988.481 kb on + strand at 988.481 kb on + strand at 988.482 kb on - strand at 988.482 kb on - strand at 988.482 kb on - strand at 988.666 kb on + strand at 988.673 kb on - strand at 988.703 kb on + strand at 988.777 kb on + strand at 988.782 kb on - strand at 988.801 kb on - strand at 988.801 kb on - strand at 988.801 kb on - strand at 988.830 kb on + strand at 988.848 kb on - strand at 988.848 kb on - strand at 988.878 kb on - strand at 988.881 kb on + strand at 988.908 kb on + strand at 988.910 kb on + strand at 988.911 kb on - strand at 988.911 kb on - strand at 988.942 kb on + strand at 988.953 kb on - strand at 988.953 kb on - strand at 988.953 kb on - strand at 988.959 kb on + strand at 988.959 kb on + strand at 988.960 kb on - strand at 988.982 kb on + strand at 988.983 kb on - strand at 988.984 kb on + strand at 988.984 kb on + strand at 988.985 kb on - strand at 988.985 kb on - strand at 988.997 kb on + strand, within IAI47_04690 at 988.997 kb on + strand, within IAI47_04690 at 988.997 kb on + strand, within IAI47_04690 at 988.997 kb on + strand, within IAI47_04690 at 988.998 kb on - strand, within IAI47_04690 at 988.998 kb on - strand, within IAI47_04690 at 989.005 kb on + strand, within IAI47_04690 at 989.005 kb on + strand, within IAI47_04690 at 989.006 kb on - strand, within IAI47_04690 at 989.038 kb on - strand, within IAI47_04690 at 989.070 kb on + strand, within IAI47_04690 at 989.128 kb on - strand, within IAI47_04690 at 989.178 kb on + strand, within IAI47_04690 at 989.187 kb on + strand, within IAI47_04690 at 989.225 kb on + strand, within IAI47_04690 at 989.226 kb on - strand, within IAI47_04690 at 989.239 kb on - strand, within IAI47_04690 at 989.254 kb on - strand, within IAI47_04690 at 989.256 kb on - strand, within IAI47_04690 at 989.298 kb on + strand, within IAI47_04690 at 989.299 kb on - strand, within IAI47_04690 at 989.358 kb on - strand, within IAI47_04690 at 989.414 kb on - strand, within IAI47_04690 at 989.449 kb on + strand, within IAI47_04690 at 989.450 kb on - strand, within IAI47_04690 at 989.489 kb on - strand, within IAI47_04690 at 989.503 kb on - strand at 989.507 kb on + strand at 989.507 kb on + strand at 989.507 kb on + strand at 989.507 kb on + strand at 989.507 kb on + strand at 989.507 kb on + strand at 989.515 kb on - strand at 989.553 kb on + strand at 989.571 kb on + strand at 989.571 kb on + strand at 989.575 kb on + strand at 989.576 kb on - strand at 989.578 kb on - strand at 989.588 kb on - strand at 989.588 kb on - strand at 989.588 kb on - strand at 989.588 kb on - strand at 989.650 kb on - strand at 989.698 kb on - strand at 989.722 kb on - strand at 989.722 kb on - strand at 989.752 kb on - strand at 989.754 kb on + strand at 989.755 kb on - strand at 989.770 kb on + strand at 989.775 kb on + strand at 989.784 kb on - strand at 989.801 kb on + strand at 989.801 kb on + strand at 989.804 kb on + strand at 989.804 kb on + strand at 989.804 kb on + strand at 989.805 kb on - strand at 989.827 kb on + strand at 989.837 kb on + strand at 989.901 kb on + strand at 989.901 kb on + strand at 989.925 kb on + strand at 989.935 kb on + strand at 989.936 kb on - strand at 989.936 kb on - strand at 989.986 kb on + strand at 989.987 kb on - strand at 989.989 kb on - strand at 989.989 kb on - strand at 989.989 kb on - strand at 990.015 kb on + strand at 990.027 kb on + strand at 990.028 kb on - strand at 990.065 kb on + strand at 990.065 kb on + strand at 990.065 kb on + strand at 990.065 kb on + strand at 990.065 kb on + strand at 990.073 kb on - strand at 990.153 kb on - strand at 990.242 kb on + strand at 990.243 kb on - strand at 990.245 kb on - strand at 990.246 kb on + strand at 990.246 kb on + strand at 990.246 kb on + strand at 990.246 kb on + strand at 990.246 kb on + strand at 990.246 kb on + strand at 990.246 kb on + strand at 990.246 kb on + strand at 990.246 kb on + strand at 990.247 kb on - strand at 990.247 kb on - strand at 990.247 kb on - strand at 990.247 kb on - strand at 990.247 kb on - strand at 990.247 kb on - strand at 990.247 kb on - strand at 990.255 kb on - strand at 990.270 kb on + strand at 990.282 kb on + strand at 990.312 kb on - strand at 990.312 kb on - strand at 990.403 kb on + strand, within IAI47_04695 at 990.404 kb on - strand, within IAI47_04695 at 990.404 kb on - strand, within IAI47_04695 at 990.518 kb on - strand, within IAI47_04695 at 990.518 kb on - strand, within IAI47_04695 at 990.541 kb on + strand, within IAI47_04695 at 990.547 kb on + strand, within IAI47_04695 at 990.548 kb on - strand, within IAI47_04695
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 987,945 + +3.0 987,945 + +0.8 987,945 + +1.1 988,065 + IAI47_04680 0.22 -0.7 988,065 + IAI47_04680 0.22 -0.7 988,065 + IAI47_04680 0.22 -0.5 988,065 + IAI47_04680 0.22 -0.9 988,065 + IAI47_04680 0.22 +1.6 988,065 + IAI47_04680 0.22 +0.7 988,065 + IAI47_04680 0.22 -0.9 988,066 - IAI47_04680 0.22 +0.3 988,076 - IAI47_04680 0.24 +0.7 988,145 + IAI47_04680 0.36 -0.9 988,146 - IAI47_04680 0.36 +2.3 988,146 - IAI47_04680 0.36 -2.1 988,159 + IAI47_04680 0.39 +0.4 988,160 - IAI47_04680 0.39 +0.9 988,160 - IAI47_04680 0.39 +0.4 988,160 - IAI47_04680 0.39 -0.5 988,160 - IAI47_04680 0.39 +1.9 988,201 - IAI47_04680 0.46 -2.7 988,246 - IAI47_04680 0.54 -1.8 988,246 - IAI47_04680 0.54 +0.9 988,250 - IAI47_04680 0.55 -0.3 988,251 + IAI47_04680 0.55 +1.5 988,251 + IAI47_04680 0.55 +1.7 988,251 + IAI47_04680 0.55 +1.5 988,252 - IAI47_04680 0.55 -2.8 988,276 + IAI47_04680 0.60 +0.5 988,277 - IAI47_04680 0.60 -1.6 988,280 - IAI47_04680 0.61 +1.0 988,280 - IAI47_04680 0.61 -1.5 988,280 - IAI47_04680 0.61 -0.8 988,292 - IAI47_04680 0.63 +1.2 988,292 - IAI47_04680 0.63 -1.3 988,292 - IAI47_04680 0.63 +0.4 988,293 + IAI47_04680 0.63 -0.2 988,293 + IAI47_04680 0.63 +1.5 988,293 + IAI47_04680 0.63 -0.3 988,293 + IAI47_04680 0.63 +0.0 988,294 - IAI47_04680 0.63 -1.5 988,294 - IAI47_04680 0.63 +0.2 988,294 - IAI47_04680 0.63 +1.1 988,294 - IAI47_04680 0.63 -0.2 988,294 - IAI47_04680 0.63 +1.5 988,294 - IAI47_04680 0.63 -1.7 988,294 - IAI47_04680 0.63 +0.5 988,310 - IAI47_04680 0.66 +0.9 988,334 + IAI47_04680 0.70 +0.0 988,334 + IAI47_04680 0.70 +0.4 988,334 + IAI47_04680 0.70 +0.5 988,334 + IAI47_04680 0.70 +0.5 988,335 - IAI47_04680 0.70 +2.5 988,335 - IAI47_04680 0.70 +0.2 988,335 - IAI47_04680 0.70 -0.3 988,337 + IAI47_04680 0.71 +1.6 988,338 - IAI47_04680 0.71 -0.0 988,345 + IAI47_04680 0.72 -2.0 988,345 + IAI47_04680 0.72 -1.6 988,346 - IAI47_04680 0.72 -1.1 988,397 - IAI47_04680 0.82 -1.5 988,427 + IAI47_04680 0.87 +0.4 988,428 - IAI47_04680 0.87 +0.9 988,461 - -2.3 988,462 + -3.0 988,462 + -0.8 988,462 + +1.3 988,462 + +0.1 988,463 - +1.3 988,463 - -0.7 988,463 - -1.1 988,481 + +1.6 988,481 + -1.1 988,482 - +0.2 988,482 - +0.2 988,482 - -2.5 988,666 + -2.3 988,673 - +1.1 988,703 + +0.4 988,777 + +1.7 988,782 - -0.5 988,801 - +0.4 988,801 - -1.5 988,801 - +0.7 988,830 + -1.1 988,848 - +2.0 988,848 - -0.7 988,878 - +0.7 988,881 + +0.6 988,908 + +3.0 988,910 + +3.0 988,911 - -1.4 988,911 - +1.3 988,942 + -0.7 988,953 - -0.4 988,953 - -1.1 988,953 - -1.1 988,959 + +1.9 988,959 + +0.4 988,960 - +1.3 988,982 + +1.0 988,983 - -0.2 988,984 + -0.5 988,984 + +2.6 988,985 - -0.3 988,985 - -0.5 988,997 + IAI47_04690 0.12 -1.3 988,997 + IAI47_04690 0.12 -2.5 988,997 + IAI47_04690 0.12 -1.0 988,997 + IAI47_04690 0.12 -0.0 988,998 - IAI47_04690 0.12 -3.1 988,998 - IAI47_04690 0.12 -2.0 989,005 + IAI47_04690 0.13 +0.9 989,005 + IAI47_04690 0.13 +0.3 989,006 - IAI47_04690 0.13 -1.6 989,038 - IAI47_04690 0.18 -2.3 989,070 + IAI47_04690 0.23 -1.4 989,128 - IAI47_04690 0.32 -2.1 989,178 + IAI47_04690 0.40 +0.1 989,187 + IAI47_04690 0.41 +0.6 989,225 + IAI47_04690 0.47 +1.0 989,226 - IAI47_04690 0.47 -2.0 989,239 - IAI47_04690 0.49 +0.3 989,254 - IAI47_04690 0.52 -1.1 989,256 - IAI47_04690 0.52 -2.5 989,298 + IAI47_04690 0.58 +0.1 989,299 - IAI47_04690 0.59 -0.1 989,358 - IAI47_04690 0.68 -1.1 989,414 - IAI47_04690 0.76 -0.7 989,449 + IAI47_04690 0.82 +0.3 989,450 - IAI47_04690 0.82 +1.6 989,489 - IAI47_04690 0.88 +0.1 989,503 - -0.5 989,507 + +1.0 989,507 + +0.7 989,507 + -0.5 989,507 + +0.3 989,507 + +1.1 989,507 + -1.6 989,515 - -0.9 989,553 + -0.1 989,571 + +2.1 989,571 + -0.6 989,575 + +0.1 989,576 - +2.4 989,578 - -3.2 989,588 - +0.3 989,588 - -1.8 989,588 - +1.3 989,588 - -1.1 989,650 - -1.9 989,698 - -2.0 989,722 - +3.7 989,722 - +0.1 989,752 - -1.8 989,754 + +0.7 989,755 - -0.4 989,770 + -2.0 989,775 + -1.3 989,784 - -0.7 989,801 + +0.1 989,801 + +0.5 989,804 + -0.3 989,804 + +0.1 989,804 + +2.5 989,805 - +1.6 989,827 + +0.8 989,837 + +0.4 989,901 + +0.2 989,901 + +0.1 989,925 + -1.3 989,935 + +0.9 989,936 - -2.5 989,936 - -1.6 989,986 + +1.9 989,987 - -0.5 989,989 - -0.1 989,989 - -0.1 989,989 - -0.6 990,015 + -0.7 990,027 + +1.1 990,028 - +0.8 990,065 + +0.1 990,065 + -0.3 990,065 + +2.1 990,065 + +1.4 990,065 + +0.9 990,073 - +2.5 990,153 - -1.5 990,242 + -1.1 990,243 - -3.5 990,245 - -3.7 990,246 + -0.2 990,246 + +0.1 990,246 + +0.3 990,246 + -2.1 990,246 + -1.8 990,246 + -1.3 990,246 + +1.2 990,246 + -0.9 990,246 + -2.8 990,247 - -0.6 990,247 - +0.4 990,247 - -0.1 990,247 - +1.7 990,247 - -2.3 990,247 - -0.0 990,247 - -1.7 990,255 - +3.2 990,270 + +1.6 990,282 + -2.3 990,312 - +0.3 990,312 - +1.2 990,403 + IAI47_04695 0.26 -1.3 990,404 - IAI47_04695 0.26 -2.0 990,404 - IAI47_04695 0.26 +2.4 990,518 - IAI47_04695 0.51 +1.9 990,518 - IAI47_04695 0.51 -0.1 990,541 + IAI47_04695 0.56 -1.9 990,547 + IAI47_04695 0.57 -0.3 990,548 - IAI47_04695 0.57 +0.3
Or see this region's nucleotide sequence