Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04640 and IAI47_04645 are separated by 15 nucleotides IAI47_04645 and IAI47_04650 overlap by 8 nucleotides
IAI47_04640: IAI47_04640 - ABC transporter permease, at 976,811 to 977,860
_04640
IAI47_04645: IAI47_04645 - ABC transporter permease, at 977,876 to 978,865
_04645
IAI47_04650: IAI47_04650 - sugar ABC transporter ATP-binding protein, at 978,858 to 980,363
_04650
Position (kb) 977
978
979 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 976.897 kb on + strand at 976.898 kb on - strand at 976.907 kb on - strand at 976.928 kb on + strand, within IAI47_04640 at 976.929 kb on - strand, within IAI47_04640 at 976.929 kb on - strand, within IAI47_04640 at 976.929 kb on - strand, within IAI47_04640 at 976.994 kb on + strand, within IAI47_04640 at 976.994 kb on + strand, within IAI47_04640 at 976.994 kb on + strand, within IAI47_04640 at 976.994 kb on + strand, within IAI47_04640 at 976.995 kb on - strand, within IAI47_04640 at 977.081 kb on + strand, within IAI47_04640 at 977.081 kb on + strand, within IAI47_04640 at 977.081 kb on + strand, within IAI47_04640 at 977.082 kb on - strand, within IAI47_04640 at 977.082 kb on - strand, within IAI47_04640 at 977.082 kb on - strand, within IAI47_04640 at 977.091 kb on - strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.129 kb on - strand, within IAI47_04640 at 977.143 kb on + strand, within IAI47_04640 at 977.143 kb on + strand, within IAI47_04640 at 977.143 kb on + strand, within IAI47_04640 at 977.143 kb on + strand, within IAI47_04640 at 977.143 kb on + strand, within IAI47_04640 at 977.144 kb on - strand, within IAI47_04640 at 977.184 kb on + strand, within IAI47_04640 at 977.184 kb on + strand, within IAI47_04640 at 977.184 kb on + strand, within IAI47_04640 at 977.185 kb on - strand, within IAI47_04640 at 977.185 kb on - strand, within IAI47_04640 at 977.185 kb on - strand, within IAI47_04640 at 977.185 kb on - strand, within IAI47_04640 at 977.185 kb on - strand, within IAI47_04640 at 977.209 kb on + strand, within IAI47_04640 at 977.210 kb on - strand, within IAI47_04640 at 977.240 kb on - strand, within IAI47_04640 at 977.256 kb on + strand, within IAI47_04640 at 977.256 kb on + strand, within IAI47_04640 at 977.256 kb on + strand, within IAI47_04640 at 977.256 kb on + strand, within IAI47_04640 at 977.257 kb on - strand, within IAI47_04640 at 977.257 kb on - strand, within IAI47_04640 at 977.257 kb on - strand, within IAI47_04640 at 977.257 kb on - strand, within IAI47_04640 at 977.321 kb on + strand, within IAI47_04640 at 977.322 kb on - strand, within IAI47_04640 at 977.341 kb on + strand, within IAI47_04640 at 977.353 kb on + strand, within IAI47_04640 at 977.354 kb on - strand, within IAI47_04640 at 977.373 kb on - strand, within IAI47_04640 at 977.419 kb on + strand, within IAI47_04640 at 977.420 kb on - strand, within IAI47_04640 at 977.420 kb on - strand, within IAI47_04640 at 977.486 kb on + strand, within IAI47_04640 at 977.501 kb on + strand, within IAI47_04640 at 977.513 kb on + strand, within IAI47_04640 at 977.702 kb on + strand, within IAI47_04640 at 977.702 kb on + strand, within IAI47_04640 at 977.702 kb on + strand, within IAI47_04640 at 977.702 kb on + strand, within IAI47_04640 at 977.702 kb on + strand, within IAI47_04640 at 977.703 kb on - strand, within IAI47_04640 at 977.703 kb on - strand, within IAI47_04640 at 977.703 kb on - strand, within IAI47_04640 at 977.703 kb on - strand, within IAI47_04640 at 977.731 kb on + strand, within IAI47_04640 at 977.732 kb on - strand, within IAI47_04640 at 977.737 kb on + strand, within IAI47_04640 at 977.738 kb on - strand, within IAI47_04640 at 977.738 kb on - strand, within IAI47_04640 at 977.779 kb on + strand at 977.780 kb on - strand at 977.780 kb on - strand at 977.780 kb on - strand at 977.913 kb on + strand at 977.913 kb on + strand at 977.960 kb on - strand at 977.960 kb on - strand at 977.960 kb on - strand at 977.970 kb on + strand at 977.970 kb on + strand at 977.971 kb on - strand at 977.971 kb on - strand at 978.043 kb on + strand, within IAI47_04645 at 978.043 kb on + strand, within IAI47_04645 at 978.150 kb on + strand, within IAI47_04645 at 978.150 kb on + strand, within IAI47_04645 at 978.151 kb on - strand, within IAI47_04645 at 978.151 kb on - strand, within IAI47_04645 at 978.151 kb on - strand, within IAI47_04645 at 978.151 kb on - strand, within IAI47_04645 at 978.158 kb on + strand, within IAI47_04645 at 978.158 kb on + strand, within IAI47_04645 at 978.198 kb on + strand, within IAI47_04645 at 978.198 kb on + strand, within IAI47_04645 at 978.229 kb on + strand, within IAI47_04645 at 978.229 kb on + strand, within IAI47_04645 at 978.230 kb on - strand, within IAI47_04645 at 978.230 kb on - strand, within IAI47_04645 at 978.230 kb on - strand, within IAI47_04645 at 978.230 kb on - strand, within IAI47_04645 at 978.270 kb on + strand, within IAI47_04645 at 978.270 kb on + strand, within IAI47_04645 at 978.270 kb on + strand, within IAI47_04645 at 978.270 kb on + strand, within IAI47_04645 at 978.271 kb on - strand, within IAI47_04645 at 978.271 kb on - strand, within IAI47_04645 at 978.314 kb on + strand, within IAI47_04645 at 978.426 kb on + strand, within IAI47_04645 at 978.426 kb on + strand, within IAI47_04645 at 978.426 kb on + strand, within IAI47_04645 at 978.539 kb on + strand, within IAI47_04645 at 978.540 kb on - strand, within IAI47_04645 at 978.630 kb on + strand, within IAI47_04645 at 978.630 kb on + strand, within IAI47_04645 at 978.630 kb on + strand, within IAI47_04645 at 978.630 kb on + strand, within IAI47_04645 at 978.631 kb on - strand, within IAI47_04645 at 978.726 kb on + strand, within IAI47_04645 at 978.726 kb on + strand, within IAI47_04645 at 978.726 kb on + strand, within IAI47_04645 at 978.726 kb on + strand, within IAI47_04645 at 978.726 kb on + strand, within IAI47_04645 at 978.726 kb on + strand, within IAI47_04645 at 978.726 kb on + strand, within IAI47_04645 at 978.726 kb on + strand, within IAI47_04645 at 978.727 kb on - strand, within IAI47_04645 at 978.727 kb on - strand, within IAI47_04645 at 978.727 kb on - strand, within IAI47_04645 at 978.727 kb on - strand, within IAI47_04645 at 978.727 kb on - strand, within IAI47_04645 at 978.910 kb on + strand at 978.910 kb on + strand at 978.961 kb on + strand at 978.962 kb on - strand at 978.962 kb on - strand at 978.962 kb on - strand at 979.036 kb on + strand, within IAI47_04650 at 979.036 kb on + strand, within IAI47_04650 at 979.036 kb on + strand, within IAI47_04650 at 979.037 kb on - strand, within IAI47_04650 at 979.037 kb on - strand, within IAI47_04650 at 979.062 kb on + strand, within IAI47_04650 at 979.063 kb on - strand, within IAI47_04650 at 979.073 kb on + strand, within IAI47_04650 at 979.074 kb on - strand, within IAI47_04650 at 979.157 kb on + strand, within IAI47_04650 at 979.157 kb on + strand, within IAI47_04650 at 979.158 kb on - strand, within IAI47_04650 at 979.348 kb on + strand, within IAI47_04650 at 979.348 kb on + strand, within IAI47_04650 at 979.349 kb on - strand, within IAI47_04650 at 979.349 kb on - strand at 979.400 kb on + strand, within IAI47_04650 at 979.418 kb on + strand, within IAI47_04650 at 979.447 kb on - strand, within IAI47_04650 at 979.447 kb on - strand, within IAI47_04650 at 979.513 kb on + strand, within IAI47_04650 at 979.513 kb on + strand, within IAI47_04650 at 979.514 kb on - strand, within IAI47_04650 at 979.538 kb on - strand, within IAI47_04650 at 979.538 kb on - strand, within IAI47_04650 at 979.538 kb on - strand, within IAI47_04650 at 979.555 kb on - strand, within IAI47_04650 at 979.563 kb on + strand, within IAI47_04650 at 979.563 kb on + strand, within IAI47_04650 at 979.612 kb on + strand, within IAI47_04650 at 979.612 kb on + strand, within IAI47_04650 at 979.704 kb on + strand, within IAI47_04650 at 979.705 kb on - strand, within IAI47_04650 at 979.710 kb on - strand, within IAI47_04650 at 979.770 kb on - strand, within IAI47_04650 at 979.770 kb on - strand, within IAI47_04650 at 979.786 kb on + strand, within IAI47_04650 at 979.787 kb on - strand, within IAI47_04650 at 979.787 kb on - strand, within IAI47_04650 at 979.791 kb on + strand, within IAI47_04650 at 979.791 kb on + strand, within IAI47_04650 at 979.791 kb on + strand, within IAI47_04650 at 979.791 kb on + strand, within IAI47_04650 at 979.791 kb on + strand, within IAI47_04650 at 979.791 kb on + strand, within IAI47_04650 at 979.792 kb on - strand, within IAI47_04650 at 979.792 kb on - strand, within IAI47_04650 at 979.792 kb on - strand, within IAI47_04650 at 979.792 kb on - strand, within IAI47_04650 at 979.792 kb on - strand, within IAI47_04650 at 979.792 kb on - strand, within IAI47_04650 at 979.812 kb on + strand, within IAI47_04650
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 976,897 + -0.5 976,898 - +0.2 976,907 - -1.1 976,928 + IAI47_04640 0.11 -0.8 976,929 - IAI47_04640 0.11 +0.2 976,929 - IAI47_04640 0.11 +1.7 976,929 - IAI47_04640 0.11 +2.1 976,994 + IAI47_04640 0.17 -1.7 976,994 + IAI47_04640 0.17 +0.2 976,994 + IAI47_04640 0.17 +0.9 976,994 + IAI47_04640 0.17 +0.4 976,995 - IAI47_04640 0.18 -3.3 977,081 + IAI47_04640 0.26 -1.3 977,081 + IAI47_04640 0.26 -1.0 977,081 + IAI47_04640 0.26 +1.0 977,082 - IAI47_04640 0.26 +1.3 977,082 - IAI47_04640 0.26 -0.4 977,082 - IAI47_04640 0.26 -0.7 977,091 - IAI47_04640 0.27 +3.8 977,097 + IAI47_04640 0.27 -0.0 977,097 + IAI47_04640 0.27 -1.0 977,097 + IAI47_04640 0.27 +3.0 977,097 + IAI47_04640 0.27 -0.0 977,097 + IAI47_04640 0.27 -1.7 977,097 + IAI47_04640 0.27 +1.0 977,097 + IAI47_04640 0.27 -0.8 977,097 + IAI47_04640 0.27 +1.0 977,097 + IAI47_04640 0.27 +2.3 977,098 - IAI47_04640 0.27 +1.3 977,098 - IAI47_04640 0.27 -0.1 977,098 - IAI47_04640 0.27 -1.8 977,098 - IAI47_04640 0.27 -2.1 977,098 - IAI47_04640 0.27 +1.5 977,098 - IAI47_04640 0.27 -0.6 977,098 - IAI47_04640 0.27 +2.9 977,098 - IAI47_04640 0.27 -1.7 977,098 - IAI47_04640 0.27 +0.5 977,098 - IAI47_04640 0.27 -1.0 977,098 - IAI47_04640 0.27 -1.1 977,098 - IAI47_04640 0.27 +4.0 977,098 - IAI47_04640 0.27 -0.5 977,098 - IAI47_04640 0.27 +1.0 977,129 - IAI47_04640 0.30 +0.6 977,143 + IAI47_04640 0.32 +0.5 977,143 + IAI47_04640 0.32 -0.3 977,143 + IAI47_04640 0.32 -0.3 977,143 + IAI47_04640 0.32 +0.7 977,143 + IAI47_04640 0.32 -2.0 977,144 - IAI47_04640 0.32 +0.2 977,184 + IAI47_04640 0.36 -0.8 977,184 + IAI47_04640 0.36 +0.2 977,184 + IAI47_04640 0.36 -0.5 977,185 - IAI47_04640 0.36 +2.0 977,185 - IAI47_04640 0.36 -1.3 977,185 - IAI47_04640 0.36 +0.2 977,185 - IAI47_04640 0.36 +2.3 977,185 - IAI47_04640 0.36 -3.7 977,209 + IAI47_04640 0.38 -1.6 977,210 - IAI47_04640 0.38 -0.6 977,240 - IAI47_04640 0.41 -0.8 977,256 + IAI47_04640 0.42 +2.8 977,256 + IAI47_04640 0.42 -3.1 977,256 + IAI47_04640 0.42 -1.1 977,256 + IAI47_04640 0.42 -2.4 977,257 - IAI47_04640 0.42 +1.2 977,257 - IAI47_04640 0.42 -0.3 977,257 - IAI47_04640 0.42 -1.6 977,257 - IAI47_04640 0.42 +3.1 977,321 + IAI47_04640 0.49 +0.4 977,322 - IAI47_04640 0.49 -0.7 977,341 + IAI47_04640 0.50 +0.1 977,353 + IAI47_04640 0.52 -2.0 977,354 - IAI47_04640 0.52 -0.1 977,373 - IAI47_04640 0.54 +0.4 977,419 + IAI47_04640 0.58 +0.4 977,420 - IAI47_04640 0.58 -1.6 977,420 - IAI47_04640 0.58 -1.6 977,486 + IAI47_04640 0.64 -0.5 977,501 + IAI47_04640 0.66 -2.1 977,513 + IAI47_04640 0.67 +2.4 977,702 + IAI47_04640 0.85 -1.3 977,702 + IAI47_04640 0.85 +1.6 977,702 + IAI47_04640 0.85 +5.7 977,702 + IAI47_04640 0.85 +2.1 977,702 + IAI47_04640 0.85 -0.8 977,703 - IAI47_04640 0.85 +1.5 977,703 - IAI47_04640 0.85 +0.9 977,703 - IAI47_04640 0.85 +0.6 977,703 - IAI47_04640 0.85 -0.1 977,731 + IAI47_04640 0.88 -2.0 977,732 - IAI47_04640 0.88 +1.1 977,737 + IAI47_04640 0.88 +2.1 977,738 - IAI47_04640 0.88 -2.3 977,738 - IAI47_04640 0.88 -1.7 977,779 + +1.5 977,780 - -1.1 977,780 - -1.1 977,780 - -2.0 977,913 + +1.3 977,913 + -0.9 977,960 - -0.1 977,960 - -0.9 977,960 - +1.8 977,970 + -0.2 977,970 + +1.5 977,971 - +0.3 977,971 - +0.9 978,043 + IAI47_04645 0.17 +1.2 978,043 + IAI47_04645 0.17 -0.1 978,150 + IAI47_04645 0.28 +0.9 978,150 + IAI47_04645 0.28 +1.8 978,151 - IAI47_04645 0.28 -1.7 978,151 - IAI47_04645 0.28 -0.4 978,151 - IAI47_04645 0.28 -0.9 978,151 - IAI47_04645 0.28 -0.1 978,158 + IAI47_04645 0.28 -0.9 978,158 + IAI47_04645 0.28 +2.4 978,198 + IAI47_04645 0.33 +0.5 978,198 + IAI47_04645 0.33 -0.8 978,229 + IAI47_04645 0.36 +0.9 978,229 + IAI47_04645 0.36 +1.0 978,230 - IAI47_04645 0.36 +0.3 978,230 - IAI47_04645 0.36 +0.2 978,230 - IAI47_04645 0.36 -0.7 978,230 - IAI47_04645 0.36 +3.0 978,270 + IAI47_04645 0.40 -0.6 978,270 + IAI47_04645 0.40 -1.9 978,270 + IAI47_04645 0.40 -0.7 978,270 + IAI47_04645 0.40 -0.9 978,271 - IAI47_04645 0.40 -0.7 978,271 - IAI47_04645 0.40 +0.3 978,314 + IAI47_04645 0.44 +1.5 978,426 + IAI47_04645 0.56 +0.6 978,426 + IAI47_04645 0.56 +0.7 978,426 + IAI47_04645 0.56 -0.5 978,539 + IAI47_04645 0.67 -3.0 978,540 - IAI47_04645 0.67 -0.5 978,630 + IAI47_04645 0.76 +0.4 978,630 + IAI47_04645 0.76 +1.9 978,630 + IAI47_04645 0.76 -0.6 978,630 + IAI47_04645 0.76 +0.4 978,631 - IAI47_04645 0.76 +0.9 978,726 + IAI47_04645 0.86 -0.9 978,726 + IAI47_04645 0.86 -1.3 978,726 + IAI47_04645 0.86 -1.5 978,726 + IAI47_04645 0.86 +0.9 978,726 + IAI47_04645 0.86 -1.7 978,726 + IAI47_04645 0.86 +1.1 978,726 + IAI47_04645 0.86 -0.1 978,726 + IAI47_04645 0.86 +1.7 978,727 - IAI47_04645 0.86 -0.0 978,727 - IAI47_04645 0.86 +1.2 978,727 - IAI47_04645 0.86 -0.1 978,727 - IAI47_04645 0.86 +2.9 978,727 - IAI47_04645 0.86 -0.3 978,910 + -0.9 978,910 + -2.9 978,961 + -0.2 978,962 - +0.6 978,962 - +2.9 978,962 - +0.1 979,036 + IAI47_04650 0.12 -1.7 979,036 + IAI47_04650 0.12 -1.7 979,036 + IAI47_04650 0.12 -0.1 979,037 - IAI47_04650 0.12 +3.1 979,037 - IAI47_04650 0.12 -1.0 979,062 + IAI47_04650 0.14 +1.5 979,063 - IAI47_04650 0.14 +1.1 979,073 + IAI47_04650 0.14 +1.0 979,074 - IAI47_04650 0.14 +1.9 979,157 + IAI47_04650 0.20 -0.8 979,157 + IAI47_04650 0.20 +0.7 979,158 - IAI47_04650 0.20 -0.9 979,348 + IAI47_04650 0.33 +2.5 979,348 + IAI47_04650 0.33 -0.8 979,349 - IAI47_04650 0.33 +2.4 979,349 - +1.9 979,400 + IAI47_04650 0.36 -2.8 979,418 + IAI47_04650 0.37 -0.5 979,447 - IAI47_04650 0.39 +0.9 979,447 - IAI47_04650 0.39 -0.9 979,513 + IAI47_04650 0.43 -0.9 979,513 + IAI47_04650 0.43 -1.6 979,514 - IAI47_04650 0.44 -2.4 979,538 - IAI47_04650 0.45 -2.4 979,538 - IAI47_04650 0.45 -0.9 979,538 - IAI47_04650 0.45 +1.3 979,555 - IAI47_04650 0.46 -1.2 979,563 + IAI47_04650 0.47 +1.4 979,563 + IAI47_04650 0.47 +0.3 979,612 + IAI47_04650 0.50 -0.6 979,612 + IAI47_04650 0.50 +1.9 979,704 + IAI47_04650 0.56 +0.7 979,705 - IAI47_04650 0.56 +0.5 979,710 - IAI47_04650 0.57 +1.5 979,770 - IAI47_04650 0.61 -0.3 979,770 - IAI47_04650 0.61 -0.4 979,786 + IAI47_04650 0.62 +0.1 979,787 - IAI47_04650 0.62 -0.8 979,787 - IAI47_04650 0.62 -2.0 979,791 + IAI47_04650 0.62 -1.1 979,791 + IAI47_04650 0.62 +2.3 979,791 + IAI47_04650 0.62 +1.1 979,791 + IAI47_04650 0.62 -1.9 979,791 + IAI47_04650 0.62 +0.7 979,791 + IAI47_04650 0.62 -0.7 979,792 - IAI47_04650 0.62 +1.9 979,792 - IAI47_04650 0.62 +0.5 979,792 - IAI47_04650 0.62 +2.7 979,792 - IAI47_04650 0.62 +0.6 979,792 - IAI47_04650 0.62 +0.3 979,792 - IAI47_04650 0.62 -0.9 979,812 + IAI47_04650 0.63 +0.2
Or see this region's nucleotide sequence