Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03800 and IAI47_03805 are separated by 226 nucleotides IAI47_03805 and IAI47_03810 overlap by 26 nucleotides IAI47_03810 and IAI47_03815 are separated by 79 nucleotides
IAI47_03800: IAI47_03800 - tRNA-modifying protein YgfZ, at 793,518 to 794,504
_03800
IAI47_03805: IAI47_03805 - FAD assembly factor SdhE, at 794,731 to 794,997
_03805
IAI47_03810: IAI47_03810 - hypothetical protein, at 794,972 to 795,382
_03810
IAI47_03815: IAI47_03815 - flavodoxin FldB, at 795,462 to 795,980
_03815
Position (kb) 794
795 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 794.511 kb on - strand at 794.511 kb on - strand at 794.511 kb on - strand at 794.511 kb on - strand at 794.511 kb on - strand at 794.517 kb on + strand at 794.517 kb on + strand at 794.517 kb on + strand at 794.517 kb on + strand at 794.517 kb on + strand at 794.517 kb on + strand at 794.520 kb on + strand at 794.520 kb on + strand at 794.521 kb on - strand at 794.521 kb on - strand at 794.521 kb on - strand at 794.521 kb on - strand at 794.521 kb on - strand at 794.521 kb on - strand at 794.553 kb on + strand at 794.553 kb on + strand at 794.553 kb on + strand at 794.554 kb on - strand at 794.554 kb on - strand at 794.611 kb on + strand at 794.612 kb on - strand at 794.625 kb on + strand at 794.682 kb on + strand at 794.692 kb on + strand at 794.692 kb on + strand at 794.692 kb on + strand at 794.693 kb on - strand at 794.693 kb on - strand at 794.693 kb on - strand at 794.693 kb on - strand at 794.693 kb on - strand at 794.737 kb on - strand at 794.740 kb on - strand at 794.740 kb on - strand at 794.745 kb on + strand at 794.746 kb on - strand at 794.746 kb on - strand at 794.754 kb on + strand at 794.755 kb on - strand at 794.755 kb on - strand at 794.755 kb on - strand at 794.755 kb on - strand at 794.799 kb on + strand, within IAI47_03805 at 794.799 kb on + strand, within IAI47_03805 at 794.799 kb on + strand, within IAI47_03805 at 794.800 kb on - strand, within IAI47_03805 at 794.800 kb on - strand, within IAI47_03805 at 794.800 kb on - strand, within IAI47_03805 at 794.800 kb on - strand, within IAI47_03805 at 794.800 kb on - strand, within IAI47_03805 at 794.800 kb on - strand, within IAI47_03805 at 794.802 kb on + strand, within IAI47_03805 at 794.803 kb on - strand, within IAI47_03805 at 794.803 kb on - strand, within IAI47_03805 at 794.825 kb on + strand, within IAI47_03805 at 794.825 kb on - strand, within IAI47_03805 at 794.835 kb on + strand, within IAI47_03805 at 794.835 kb on + strand, within IAI47_03805 at 794.835 kb on + strand, within IAI47_03805 at 794.836 kb on - strand, within IAI47_03805 at 794.847 kb on + strand, within IAI47_03805 at 794.847 kb on + strand, within IAI47_03805 at 794.847 kb on + strand, within IAI47_03805 at 794.847 kb on + strand, within IAI47_03805 at 794.848 kb on - strand, within IAI47_03805 at 794.848 kb on - strand, within IAI47_03805 at 794.895 kb on + strand, within IAI47_03805 at 794.896 kb on - strand, within IAI47_03805 at 794.938 kb on - strand, within IAI47_03805 at 794.938 kb on - strand, within IAI47_03805 at 794.938 kb on - strand, within IAI47_03805 at 794.968 kb on - strand, within IAI47_03805 at 794.968 kb on - strand, within IAI47_03805 at 794.995 kb on + strand at 794.995 kb on + strand at 794.995 kb on + strand at 794.995 kb on + strand at 794.995 kb on + strand at 794.995 kb on + strand at 794.995 kb on + strand at 794.995 kb on + strand at 794.996 kb on - strand at 794.996 kb on - strand at 794.996 kb on - strand at 794.996 kb on - strand at 794.996 kb on - strand at 794.996 kb on - strand at 794.996 kb on - strand at 794.996 kb on - strand at 795.100 kb on + strand, within IAI47_03810 at 795.101 kb on - strand, within IAI47_03810 at 795.177 kb on + strand, within IAI47_03810 at 795.178 kb on - strand, within IAI47_03810 at 795.178 kb on - strand, within IAI47_03810 at 795.322 kb on + strand, within IAI47_03810 at 795.322 kb on + strand, within IAI47_03810 at 795.322 kb on + strand, within IAI47_03810 at 795.322 kb on + strand, within IAI47_03810 at 795.322 kb on + strand, within IAI47_03810 at 795.323 kb on - strand, within IAI47_03810 at 795.323 kb on - strand, within IAI47_03810 at 795.323 kb on - strand, within IAI47_03810 at 795.323 kb on - strand, within IAI47_03810 at 795.323 kb on - strand, within IAI47_03810 at 795.323 kb on - strand, within IAI47_03810 at 795.323 kb on - strand, within IAI47_03810 at 795.348 kb on + strand at 795.348 kb on + strand at 795.349 kb on - strand at 795.380 kb on + strand at 795.381 kb on - strand at 795.399 kb on + strand at 795.399 kb on + strand at 795.399 kb on + strand at 795.399 kb on + strand at 795.399 kb on + strand at 795.399 kb on + strand at 795.399 kb on + strand at 795.399 kb on + strand at 795.400 kb on - strand at 795.400 kb on - strand at 795.400 kb on - strand at 795.400 kb on - strand at 795.400 kb on - strand at 795.402 kb on + strand at 795.402 kb on + strand at 795.402 kb on + strand at 795.402 kb on + strand at 795.402 kb on + strand at 795.402 kb on + strand at 795.402 kb on + strand at 795.403 kb on - strand at 795.403 kb on - strand at 795.403 kb on - strand at 795.433 kb on + strand at 795.433 kb on + strand at 795.434 kb on - strand at 795.434 kb on - strand at 795.489 kb on + strand at 795.490 kb on - strand at 795.490 kb on - strand at 795.490 kb on - strand at 795.490 kb on - strand at 795.490 kb on - strand at 795.610 kb on + strand, within IAI47_03815 at 795.610 kb on + strand, within IAI47_03815 at 795.610 kb on + strand, within IAI47_03815 at 795.611 kb on - strand, within IAI47_03815 at 795.611 kb on - strand, within IAI47_03815 at 795.611 kb on - strand, within IAI47_03815 at 795.611 kb on - strand, within IAI47_03815 at 795.611 kb on - strand, within IAI47_03815 at 795.629 kb on - strand, within IAI47_03815 at 795.687 kb on + strand, within IAI47_03815 at 795.687 kb on + strand, within IAI47_03815 at 795.703 kb on + strand, within IAI47_03815 at 795.704 kb on - strand, within IAI47_03815 at 795.727 kb on + strand, within IAI47_03815 at 795.728 kb on - strand, within IAI47_03815 at 795.728 kb on - strand, within IAI47_03815 at 795.728 kb on - strand, within IAI47_03815 at 795.844 kb on + strand, within IAI47_03815 at 795.844 kb on + strand, within IAI47_03815 at 795.844 kb on + strand, within IAI47_03815 at 795.844 kb on + strand, within IAI47_03815 at 795.882 kb on - strand, within IAI47_03815 at 795.882 kb on - strand, within IAI47_03815 at 795.882 kb on - strand, within IAI47_03815 at 795.895 kb on - strand, within IAI47_03815 at 795.944 kb on - strand at 795.944 kb on - strand at 795.950 kb on + strand at 795.950 kb on + strand at 795.951 kb on - strand at 795.987 kb on - strand at 795.997 kb on - strand at 795.997 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 794,511 - +0.3 794,511 - -0.7 794,511 - -0.7 794,511 - -0.9 794,511 - -1.3 794,517 + +0.6 794,517 + -0.4 794,517 + -1.9 794,517 + +0.4 794,517 + -2.0 794,517 + +2.4 794,520 + -0.4 794,520 + -1.3 794,521 - +0.3 794,521 - +2.6 794,521 - -1.0 794,521 - -0.6 794,521 - +0.6 794,521 - +0.3 794,553 + -0.8 794,553 + -1.6 794,553 + +1.0 794,554 - -0.4 794,554 - -1.2 794,611 + -1.9 794,612 - +0.8 794,625 + +4.0 794,682 + -2.9 794,692 + +0.1 794,692 + -0.9 794,692 + -1.5 794,693 - +1.2 794,693 - -2.1 794,693 - +0.2 794,693 - +1.4 794,693 - -0.8 794,737 - -1.6 794,740 - +1.2 794,740 - -1.4 794,745 + +1.9 794,746 - -1.2 794,746 - +0.5 794,754 + +3.5 794,755 - -0.7 794,755 - +1.8 794,755 - -1.1 794,755 - -0.9 794,799 + IAI47_03805 0.25 -0.7 794,799 + IAI47_03805 0.25 -0.1 794,799 + IAI47_03805 0.25 +1.2 794,800 - IAI47_03805 0.26 -1.1 794,800 - IAI47_03805 0.26 -0.7 794,800 - IAI47_03805 0.26 -0.9 794,800 - IAI47_03805 0.26 -0.1 794,800 - IAI47_03805 0.26 -1.4 794,800 - IAI47_03805 0.26 -0.1 794,802 + IAI47_03805 0.27 +0.3 794,803 - IAI47_03805 0.27 -0.4 794,803 - IAI47_03805 0.27 +0.7 794,825 + IAI47_03805 0.35 +4.7 794,825 - IAI47_03805 0.35 +0.9 794,835 + IAI47_03805 0.39 -0.1 794,835 + IAI47_03805 0.39 +1.5 794,835 + IAI47_03805 0.39 +0.2 794,836 - IAI47_03805 0.39 -0.4 794,847 + IAI47_03805 0.43 +1.9 794,847 + IAI47_03805 0.43 -0.6 794,847 + IAI47_03805 0.43 -0.6 794,847 + IAI47_03805 0.43 +0.2 794,848 - IAI47_03805 0.44 -1.4 794,848 - IAI47_03805 0.44 -0.1 794,895 + IAI47_03805 0.61 +1.2 794,896 - IAI47_03805 0.62 +0.6 794,938 - IAI47_03805 0.78 -1.6 794,938 - IAI47_03805 0.78 -0.7 794,938 - IAI47_03805 0.78 +0.5 794,968 - IAI47_03805 0.89 -1.6 794,968 - IAI47_03805 0.89 -1.7 794,995 + -1.2 794,995 + +1.3 794,995 + -1.7 794,995 + +0.3 794,995 + +1.1 794,995 + +1.1 794,995 + +0.1 794,995 + -1.2 794,996 - +0.4 794,996 - +0.5 794,996 - -0.4 794,996 - -2.3 794,996 - +0.9 794,996 - +1.1 794,996 - -1.5 794,996 - -2.3 795,100 + IAI47_03810 0.31 -0.5 795,101 - IAI47_03810 0.31 -1.4 795,177 + IAI47_03810 0.50 +0.4 795,178 - IAI47_03810 0.50 -2.4 795,178 - IAI47_03810 0.50 +2.0 795,322 + IAI47_03810 0.85 +0.9 795,322 + IAI47_03810 0.85 -1.9 795,322 + IAI47_03810 0.85 +0.3 795,322 + IAI47_03810 0.85 -0.3 795,322 + IAI47_03810 0.85 +0.4 795,323 - IAI47_03810 0.85 -0.8 795,323 - IAI47_03810 0.85 -1.4 795,323 - IAI47_03810 0.85 +0.0 795,323 - IAI47_03810 0.85 -0.4 795,323 - IAI47_03810 0.85 +0.2 795,323 - IAI47_03810 0.85 -3.2 795,323 - IAI47_03810 0.85 +0.1 795,348 + +0.1 795,348 + +0.9 795,349 - +1.3 795,380 + +3.7 795,381 - +0.8 795,399 + +1.2 795,399 + +1.6 795,399 + -2.3 795,399 + +0.5 795,399 + -1.9 795,399 + -1.2 795,399 + -0.1 795,399 + +0.2 795,400 - +0.4 795,400 - -0.7 795,400 - -0.9 795,400 - -0.7 795,400 - -1.4 795,402 + +0.4 795,402 + -0.0 795,402 + +1.6 795,402 + -0.3 795,402 + -2.7 795,402 + +1.8 795,402 + +0.8 795,403 - -1.2 795,403 - +1.2 795,403 - +1.6 795,433 + -1.3 795,433 + +1.3 795,434 - -0.7 795,434 - +0.2 795,489 + -2.4 795,490 - -0.7 795,490 - -1.1 795,490 - +0.1 795,490 - -1.7 795,490 - +0.4 795,610 + IAI47_03815 0.29 +2.2 795,610 + IAI47_03815 0.29 +0.4 795,610 + IAI47_03815 0.29 -1.1 795,611 - IAI47_03815 0.29 +0.3 795,611 - IAI47_03815 0.29 +0.2 795,611 - IAI47_03815 0.29 +0.9 795,611 - IAI47_03815 0.29 +0.2 795,611 - IAI47_03815 0.29 -0.1 795,629 - IAI47_03815 0.32 -1.7 795,687 + IAI47_03815 0.43 +2.5 795,687 + IAI47_03815 0.43 +1.2 795,703 + IAI47_03815 0.46 +0.3 795,704 - IAI47_03815 0.47 -0.2 795,727 + IAI47_03815 0.51 +0.7 795,728 - IAI47_03815 0.51 -0.2 795,728 - IAI47_03815 0.51 -2.5 795,728 - IAI47_03815 0.51 +0.4 795,844 + IAI47_03815 0.74 -0.7 795,844 + IAI47_03815 0.74 +0.6 795,844 + IAI47_03815 0.74 +1.4 795,844 + IAI47_03815 0.74 -1.4 795,882 - IAI47_03815 0.81 -1.6 795,882 - IAI47_03815 0.81 -0.9 795,882 - IAI47_03815 0.81 -0.9 795,895 - IAI47_03815 0.83 -0.4 795,944 - -0.5 795,944 - +0.6 795,950 + -0.1 795,950 + -2.7 795,951 - -1.6 795,987 - +0.9 795,997 - +0.7 795,997 - -0.4
Or see this region's nucleotide sequence