Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_01900 and IAI47_01905 are separated by 93 nucleotides IAI47_01905 and IAI47_01910 are separated by 67 nucleotides IAI47_01910 and IAI47_01915 overlap by 17 nucleotides IAI47_01915 and IAI47_01920 are separated by 16 nucleotides
IAI47_01900: IAI47_01900 - SPOR domain-containing protein, at 416,470 to 417,516
_01900
IAI47_01905: IAI47_01905 - adenine-specific DNA-methyltransferase, at 417,610 to 418,425
_01905
IAI47_01910: IAI47_01910 - ribulose-phosphate 3-epimerase, at 418,493 to 419,176
_01910
IAI47_01915: IAI47_01915 - phosphoglycolate phosphatase, at 419,160 to 419,837
_01915
IAI47_01920: IAI47_01920 - tryptophan--tRNA ligase, at 419,854 to 420,855
_01920
Position (kb) 418
419
420 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 417.587 kb on + strand at 417.587 kb on + strand at 417.587 kb on + strand at 417.587 kb on + strand at 417.594 kb on + strand at 417.594 kb on + strand at 417.594 kb on + strand at 417.594 kb on + strand at 417.594 kb on + strand at 417.594 kb on + strand at 417.597 kb on + strand at 417.597 kb on + strand at 417.597 kb on + strand at 417.597 kb on + strand at 417.597 kb on + strand at 418.423 kb on + strand at 419.324 kb on + strand, within IAI47_01915 at 419.438 kb on + strand, within IAI47_01915 at 419.438 kb on + strand, within IAI47_01915 at 419.438 kb on + strand, within IAI47_01915 at 419.458 kb on + strand, within IAI47_01915 at 419.479 kb on + strand, within IAI47_01915 at 419.479 kb on + strand, within IAI47_01915 at 419.582 kb on + strand, within IAI47_01915 at 419.633 kb on + strand, within IAI47_01915 at 419.633 kb on + strand, within IAI47_01915 at 419.656 kb on + strand, within IAI47_01915 at 419.656 kb on + strand, within IAI47_01915 at 419.699 kb on + strand, within IAI47_01915 at 419.699 kb on + strand, within IAI47_01915 at 419.738 kb on + strand, within IAI47_01915 at 419.751 kb on + strand, within IAI47_01915 at 419.751 kb on + strand, within IAI47_01915 at 419.753 kb on + strand, within IAI47_01915 at 419.753 kb on + strand, within IAI47_01915 at 419.753 kb on + strand, within IAI47_01915 at 419.753 kb on + strand, within IAI47_01915 at 419.753 kb on + strand, within IAI47_01915 at 419.791 kb on + strand at 419.835 kb on + strand at 419.835 kb on + strand at 419.835 kb on + strand at 419.835 kb on + strand at 419.839 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 417,587 + -2.7 417,587 + -3.6 417,587 + -1.1 417,587 + -0.1 417,594 + +0.9 417,594 + -0.4 417,594 + -1.1 417,594 + +1.9 417,594 + +1.0 417,594 + +0.3 417,597 + -1.9 417,597 + +0.7 417,597 + -0.5 417,597 + -0.9 417,597 + -1.7 418,423 + +0.7 419,324 + IAI47_01915 0.24 -0.7 419,438 + IAI47_01915 0.41 +1.8 419,438 + IAI47_01915 0.41 +2.6 419,438 + IAI47_01915 0.41 +3.9 419,458 + IAI47_01915 0.44 -0.3 419,479 + IAI47_01915 0.47 +0.4 419,479 + IAI47_01915 0.47 +0.2 419,582 + IAI47_01915 0.62 +2.7 419,633 + IAI47_01915 0.70 +0.7 419,633 + IAI47_01915 0.70 -0.7 419,656 + IAI47_01915 0.73 +2.1 419,656 + IAI47_01915 0.73 +1.4 419,699 + IAI47_01915 0.79 -2.5 419,699 + IAI47_01915 0.79 +3.2 419,738 + IAI47_01915 0.85 +0.2 419,751 + IAI47_01915 0.87 +2.2 419,751 + IAI47_01915 0.87 +1.1 419,753 + IAI47_01915 0.87 +0.0 419,753 + IAI47_01915 0.87 -0.9 419,753 + IAI47_01915 0.87 +1.6 419,753 + IAI47_01915 0.87 -2.7 419,753 + IAI47_01915 0.87 +1.1 419,791 + -0.6 419,835 + -0.7 419,835 + -0.3 419,835 + -0.9 419,835 + +1.7 419,839 + -0.4
Or see this region's nucleotide sequence