Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1007

Experiment: Lomefloxacin 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1006 and Ga0059261_1007 are separated by 100 nucleotidesGa0059261_1007 and Ga0059261_1008 overlap by 4 nucleotidesGa0059261_1008 and Ga0059261_1009 are separated by 19 nucleotides Ga0059261_1006: Ga0059261_1006 - NAD-dependent aldehyde dehydrogenases, at 1,045,026 to 1,046,387 _1006 Ga0059261_1007: Ga0059261_1007 - Exodeoxyribonuclease VII small subunit (EC 3.1.11.6), at 1,046,488 to 1,046,733 _1007 Ga0059261_1008: Ga0059261_1008 - Geranylgeranyl pyrophosphate synthase, at 1,046,730 to 1,047,641 _1008 Ga0059261_1009: Ga0059261_1009 - Phosphopantetheine adenylyltransferase (EC 2.7.7.3), at 1,047,661 to 1,048,167 _1009 Position (kb) 1046 1047Strain fitness (log2 ratio) -2 -1 0 1at 1045.567 kb on + strand, within Ga0059261_1006at 1045.567 kb on + strand, within Ga0059261_1006at 1045.567 kb on + strand, within Ga0059261_1006at 1045.568 kb on - strand, within Ga0059261_1006at 1045.568 kb on - strand, within Ga0059261_1006at 1045.568 kb on - strand, within Ga0059261_1006at 1045.568 kb on - strand, within Ga0059261_1006at 1045.568 kb on - strand, within Ga0059261_1006at 1045.568 kb on - strand, within Ga0059261_1006at 1045.568 kb on - strand, within Ga0059261_1006at 1045.991 kb on - strand, within Ga0059261_1006at 1046.089 kb on + strand, within Ga0059261_1006at 1046.089 kb on + strandat 1046.090 kb on - strand, within Ga0059261_1006at 1046.090 kb on - strand, within Ga0059261_1006at 1046.090 kb on - strand, within Ga0059261_1006at 1046.110 kb on + strand, within Ga0059261_1006at 1046.411 kb on + strandat 1046.411 kb on + strandat 1046.411 kb on + strandat 1046.411 kb on + strandat 1046.411 kb on + strandat 1046.411 kb on - strandat 1046.412 kb on - strandat 1046.412 kb on - strandat 1046.412 kb on - strandat 1046.426 kb on + strandat 1046.427 kb on - strandat 1046.427 kb on - strandat 1046.427 kb on - strandat 1046.427 kb on - strandat 1046.427 kb on - strandat 1046.427 kb on - strandat 1046.427 kb on - strandat 1046.427 kb on - strandat 1046.427 kb on - strandat 1046.478 kb on + strandat 1046.853 kb on + strand, within Ga0059261_1008at 1046.853 kb on + strand, within Ga0059261_1008at 1046.853 kb on + strand, within Ga0059261_1008at 1046.991 kb on + strand, within Ga0059261_1008at 1046.991 kb on + strand, within Ga0059261_1008at 1046.991 kb on + strand, within Ga0059261_1008at 1046.991 kb on + strand, within Ga0059261_1008at 1047.365 kb on + strand, within Ga0059261_1008at 1047.381 kb on + strand, within Ga0059261_1008at 1047.381 kb on + strand, within Ga0059261_1008at 1047.618 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.02 mM
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1,045,567 + Ga0059261_1006 0.40 -0.0
1,045,567 + Ga0059261_1006 0.40 +1.5
1,045,567 + Ga0059261_1006 0.40 -0.2
1,045,568 - Ga0059261_1006 0.40 -0.5
1,045,568 - Ga0059261_1006 0.40 -0.1
1,045,568 - Ga0059261_1006 0.40 +0.3
1,045,568 - Ga0059261_1006 0.40 -0.1
1,045,568 - Ga0059261_1006 0.40 +0.0
1,045,568 - Ga0059261_1006 0.40 -0.5
1,045,568 - Ga0059261_1006 0.40 +1.7
1,045,991 - Ga0059261_1006 0.71 -0.0
1,046,089 + Ga0059261_1006 0.78 -0.0
1,046,089 + +0.1
1,046,090 - Ga0059261_1006 0.78 +0.3
1,046,090 - Ga0059261_1006 0.78 -0.3
1,046,090 - Ga0059261_1006 0.78 -0.5
1,046,110 + Ga0059261_1006 0.80 +0.8
1,046,411 + +0.1
1,046,411 + -2.5
1,046,411 + -0.7
1,046,411 + +1.0
1,046,411 + -0.1
1,046,411 - +0.2
1,046,412 - -0.4
1,046,412 - -2.7
1,046,412 - +1.0
1,046,426 + -0.2
1,046,427 - +0.0
1,046,427 - -0.3
1,046,427 - -0.1
1,046,427 - +0.2
1,046,427 - -1.0
1,046,427 - +0.2
1,046,427 - +0.0
1,046,427 - -1.0
1,046,427 - +1.1
1,046,478 + -2.1
1,046,853 + Ga0059261_1008 0.13 +0.5
1,046,853 + Ga0059261_1008 0.13 -0.5
1,046,853 + Ga0059261_1008 0.13 -1.1
1,046,991 + Ga0059261_1008 0.29 -0.9
1,046,991 + Ga0059261_1008 0.29 -2.2
1,046,991 + Ga0059261_1008 0.29 +0.0
1,046,991 + Ga0059261_1008 0.29 -0.5
1,047,365 + Ga0059261_1008 0.70 -0.5
1,047,381 + Ga0059261_1008 0.71 -0.6
1,047,381 + Ga0059261_1008 0.71 +1.0
1,047,618 + -0.0

Or see this region's nucleotide sequence