Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18915

Experiment: D-Trehalose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS18910 and BWI76_RS18915 are separated by 38 nucleotidesBWI76_RS18915 and BWI76_RS18920 are separated by 371 nucleotides BWI76_RS18910: BWI76_RS18910 - LysR family transcriptional regulator, at 3,922,474 to 3,923,364 _RS18910 BWI76_RS18915: BWI76_RS18915 - NAD(P)-dependent oxidoreductase, at 3,923,403 to 3,924,227 _RS18915 BWI76_RS18920: BWI76_RS18920 - ATP phosphoribosyltransferase, at 3,924,599 to 3,925,498 _RS18920 Position (kb) 3923 3924 3925Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3922.490 kb on + strandat 3922.503 kb on + strandat 3922.586 kb on + strand, within BWI76_RS18910at 3922.673 kb on + strand, within BWI76_RS18910at 3922.681 kb on - strand, within BWI76_RS18910at 3922.683 kb on + strand, within BWI76_RS18910at 3922.696 kb on - strand, within BWI76_RS18910at 3922.899 kb on + strand, within BWI76_RS18910at 3923.095 kb on + strand, within BWI76_RS18910at 3923.263 kb on - strand, within BWI76_RS18910at 3923.456 kb on - strandat 3923.834 kb on - strand, within BWI76_RS18915at 3924.034 kb on - strand, within BWI76_RS18915at 3924.265 kb on - strandat 3924.265 kb on - strandat 3924.265 kb on - strandat 3924.568 kb on + strandat 3924.568 kb on + strandat 3924.578 kb on + strandat 3924.586 kb on - strandat 3924.586 kb on - strandat 3924.586 kb on - strandat 3924.698 kb on - strand, within BWI76_RS18920at 3924.720 kb on - strand, within BWI76_RS18920at 3924.867 kb on - strand, within BWI76_RS18920at 3925.011 kb on + strand, within BWI76_RS18920

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
remove
3,922,490 + +1.2
3,922,503 + +0.7
3,922,586 + BWI76_RS18910 0.13 -0.2
3,922,673 + BWI76_RS18910 0.22 -0.3
3,922,681 - BWI76_RS18910 0.23 -0.1
3,922,683 + BWI76_RS18910 0.23 -0.2
3,922,696 - BWI76_RS18910 0.25 -0.4
3,922,899 + BWI76_RS18910 0.48 -0.1
3,923,095 + BWI76_RS18910 0.70 -0.6
3,923,263 - BWI76_RS18910 0.89 +0.1
3,923,456 - -0.5
3,923,834 - BWI76_RS18915 0.52 +0.9
3,924,034 - BWI76_RS18915 0.76 -0.2
3,924,265 - +0.1
3,924,265 - +0.2
3,924,265 - +0.5
3,924,568 + -0.1
3,924,568 + -2.5
3,924,578 + -0.2
3,924,586 - -2.6
3,924,586 - -5.4
3,924,586 - -3.4
3,924,698 - BWI76_RS18920 0.11 -3.6
3,924,720 - BWI76_RS18920 0.13 -3.7
3,924,867 - BWI76_RS18920 0.30 -4.6
3,925,011 + BWI76_RS18920 0.46 -2.6

Or see this region's nucleotide sequence