Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26820

Experiment: acetate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_26815 and AO356_26820 are separated by 38 nucleotidesAO356_26820 and AO356_26825 are separated by 129 nucleotides AO356_26815: AO356_26815 - short-chain dehydrogenase, at 6,106,310 to 6,107,368 _26815 AO356_26820: AO356_26820 - hypothetical protein, at 6,107,407 to 6,107,667 _26820 AO356_26825: AO356_26825 - histidine kinase, at 6,107,797 to 6,109,170 _26825 Position (kb) 6107 6108Strain fitness (log2 ratio) -3 -2 -1 0 1at 6106.446 kb on + strand, within AO356_26815at 6106.446 kb on + strand, within AO356_26815at 6106.447 kb on - strand, within AO356_26815at 6106.483 kb on - strand, within AO356_26815at 6106.857 kb on + strand, within AO356_26815at 6107.201 kb on + strand, within AO356_26815at 6107.477 kb on + strand, within AO356_26820at 6107.477 kb on + strand, within AO356_26820at 6107.564 kb on + strand, within AO356_26820at 6107.780 kb on + strandat 6108.055 kb on + strand, within AO356_26825at 6108.056 kb on - strand, within AO356_26825at 6108.056 kb on - strand, within AO356_26825

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate 40 mM
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6,106,446 + AO356_26815 0.13 -0.3
6,106,446 + AO356_26815 0.13 +0.6
6,106,447 - AO356_26815 0.13 +0.1
6,106,483 - AO356_26815 0.16 -0.7
6,106,857 + AO356_26815 0.52 +0.2
6,107,201 + AO356_26815 0.84 +1.0
6,107,477 + AO356_26820 0.27 -0.7
6,107,477 + AO356_26820 0.27 -1.4
6,107,564 + AO356_26820 0.60 -0.9
6,107,780 + -3.1
6,108,055 + AO356_26825 0.19 +0.3
6,108,056 - AO356_26825 0.19 +0.8
6,108,056 - AO356_26825 0.19 -0.8

Or see this region's nucleotide sequence