Experiment: acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_07705 and AO356_07710 overlap by 4 nucleotides AO356_07710 and AO356_07715 overlap by 4 nucleotides AO356_07715 and AO356_07720 overlap by 4 nucleotides AO356_07720 and AO356_07725 are separated by 28 nucleotides
AO356_07705: AO356_07705 - ABC transporter permease, at 1,711,834 to 1,712,781
_07705
AO356_07710: AO356_07710 - nickel ABC transporter permease, at 1,712,778 to 1,713,635
_07710
AO356_07715: AO356_07715 - methionine ABC transporter ATP-binding protein, at 1,713,632 to 1,714,618
_07715
AO356_07720: AO356_07720 - ABC transporter ATP-binding protein, at 1,714,615 to 1,715,586
_07720
AO356_07725: AO356_07725 - diguanylate cyclase, at 1,715,615 to 1,717,129
_07725
Position (kb)
1713
1714
1715 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1712.671 kb on + strand, within AO356_07705 at 1712.671 kb on + strand, within AO356_07705 at 1712.671 kb on + strand, within AO356_07705 at 1712.671 kb on + strand, within AO356_07705 at 1712.672 kb on - strand, within AO356_07705 at 1712.946 kb on - strand, within AO356_07710 at 1713.111 kb on + strand, within AO356_07710 at 1713.111 kb on + strand, within AO356_07710 at 1713.112 kb on - strand, within AO356_07710 at 1713.156 kb on - strand, within AO356_07710 at 1713.158 kb on + strand, within AO356_07710 at 1713.158 kb on + strand, within AO356_07710 at 1713.231 kb on + strand, within AO356_07710 at 1713.231 kb on + strand, within AO356_07710 at 1713.231 kb on + strand, within AO356_07710 at 1713.232 kb on - strand, within AO356_07710 at 1713.232 kb on - strand, within AO356_07710 at 1713.264 kb on + strand, within AO356_07710 at 1713.264 kb on + strand, within AO356_07710 at 1713.264 kb on + strand, within AO356_07710 at 1713.265 kb on - strand, within AO356_07710 at 1713.265 kb on - strand, within AO356_07710 at 1713.265 kb on - strand, within AO356_07710 at 1713.427 kb on + strand, within AO356_07710 at 1713.453 kb on + strand, within AO356_07710 at 1713.454 kb on - strand, within AO356_07710 at 1713.454 kb on - strand, within AO356_07710 at 1713.987 kb on + strand, within AO356_07715 at 1713.987 kb on + strand, within AO356_07715 at 1713.988 kb on - strand, within AO356_07715 at 1714.045 kb on - strand, within AO356_07715 at 1714.204 kb on - strand, within AO356_07715 at 1714.204 kb on - strand, within AO356_07715 at 1714.322 kb on + strand, within AO356_07715 at 1714.322 kb on + strand, within AO356_07715 at 1714.323 kb on - strand, within AO356_07715 at 1714.323 kb on - strand, within AO356_07715 at 1714.386 kb on - strand, within AO356_07715 at 1714.386 kb on - strand, within AO356_07715 at 1714.388 kb on - strand, within AO356_07715 at 1714.918 kb on + strand, within AO356_07720 at 1714.918 kb on + strand, within AO356_07720 at 1714.919 kb on - strand, within AO356_07720 at 1714.919 kb on - strand, within AO356_07720 at 1714.920 kb on + strand, within AO356_07720 at 1714.920 kb on + strand, within AO356_07720 at 1714.921 kb on - strand, within AO356_07720 at 1715.299 kb on + strand, within AO356_07720 at 1715.300 kb on - strand, within AO356_07720 at 1715.300 kb on - strand, within AO356_07720 at 1715.300 kb on - strand, within AO356_07720 at 1715.362 kb on + strand, within AO356_07720 at 1715.362 kb on + strand, within AO356_07720 at 1715.362 kb on + strand, within AO356_07720 at 1715.362 kb on + strand, within AO356_07720 at 1715.362 kb on + strand, within AO356_07720 at 1715.363 kb on - strand, within AO356_07720 at 1715.363 kb on - strand, within AO356_07720 at 1715.363 kb on - strand, within AO356_07720 at 1715.365 kb on - strand, within AO356_07720 at 1715.365 kb on - strand, within AO356_07720 at 1715.365 kb on - strand, within AO356_07720 at 1715.556 kb on + strand at 1715.556 kb on + strand at 1715.556 kb on + strand at 1715.556 kb on + strand at 1715.556 kb on + strand at 1715.556 kb on + strand at 1715.556 kb on + strand at 1715.556 kb on + strand at 1715.556 kb on + strand at 1715.557 kb on - strand at 1715.557 kb on - strand at 1715.557 kb on - strand at 1715.557 kb on - strand at 1715.557 kb on - strand at 1715.557 kb on - strand at 1715.557 kb on - strand at 1715.557 kb on - strand at 1715.557 kb on - strand at 1715.557 kb on - strand at 1715.557 kb on - strand at 1715.601 kb on + strand at 1715.601 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate 40 mM remove 1,712,671 + AO356_07705 0.88 -0.1 1,712,671 + AO356_07705 0.88 -2.9 1,712,671 + AO356_07705 0.88 +0.9 1,712,671 + AO356_07705 0.88 +0.7 1,712,672 - AO356_07705 0.88 -0.0 1,712,946 - AO356_07710 0.20 +0.3 1,713,111 + AO356_07710 0.39 -0.4 1,713,111 + AO356_07710 0.39 +1.0 1,713,112 - AO356_07710 0.39 -0.1 1,713,156 - AO356_07710 0.44 +0.4 1,713,158 + AO356_07710 0.44 -0.3 1,713,158 + AO356_07710 0.44 -0.7 1,713,231 + AO356_07710 0.53 +0.3 1,713,231 + AO356_07710 0.53 -0.1 1,713,231 + AO356_07710 0.53 -0.2 1,713,232 - AO356_07710 0.53 -0.1 1,713,232 - AO356_07710 0.53 +0.7 1,713,264 + AO356_07710 0.57 +0.5 1,713,264 + AO356_07710 0.57 +0.9 1,713,264 + AO356_07710 0.57 +0.6 1,713,265 - AO356_07710 0.57 -0.3 1,713,265 - AO356_07710 0.57 -0.2 1,713,265 - AO356_07710 0.57 -1.3 1,713,427 + AO356_07710 0.76 +0.5 1,713,453 + AO356_07710 0.79 +0.2 1,713,454 - AO356_07710 0.79 -0.2 1,713,454 - AO356_07710 0.79 -0.2 1,713,987 + AO356_07715 0.36 -0.5 1,713,987 + AO356_07715 0.36 +0.2 1,713,988 - AO356_07715 0.36 -1.6 1,714,045 - AO356_07715 0.42 -0.6 1,714,204 - AO356_07715 0.58 -0.6 1,714,204 - AO356_07715 0.58 -0.1 1,714,322 + AO356_07715 0.70 +0.1 1,714,322 + AO356_07715 0.70 +0.3 1,714,323 - AO356_07715 0.70 +0.6 1,714,323 - AO356_07715 0.70 -0.2 1,714,386 - AO356_07715 0.76 -0.0 1,714,386 - AO356_07715 0.76 -0.2 1,714,388 - AO356_07715 0.77 -0.8 1,714,918 + AO356_07720 0.31 -2.3 1,714,918 + AO356_07720 0.31 -0.3 1,714,919 - AO356_07720 0.31 -0.1 1,714,919 - AO356_07720 0.31 +0.7 1,714,920 + AO356_07720 0.31 +1.1 1,714,920 + AO356_07720 0.31 -0.0 1,714,921 - AO356_07720 0.31 -1.0 1,715,299 + AO356_07720 0.70 +0.0 1,715,300 - AO356_07720 0.70 -0.8 1,715,300 - AO356_07720 0.70 -0.2 1,715,300 - AO356_07720 0.70 +0.5 1,715,362 + AO356_07720 0.77 -0.3 1,715,362 + AO356_07720 0.77 +0.5 1,715,362 + AO356_07720 0.77 -0.5 1,715,362 + AO356_07720 0.77 +0.3 1,715,362 + AO356_07720 0.77 +0.9 1,715,363 - AO356_07720 0.77 -0.3 1,715,363 - AO356_07720 0.77 +0.1 1,715,363 - AO356_07720 0.77 -0.2 1,715,365 - AO356_07720 0.77 -0.8 1,715,365 - AO356_07720 0.77 +0.2 1,715,365 - AO356_07720 0.77 -0.1 1,715,556 + -1.3 1,715,556 + +0.4 1,715,556 + -0.0 1,715,556 + +0.7 1,715,556 + -0.6 1,715,556 + -0.8 1,715,556 + -1.3 1,715,556 + -0.6 1,715,556 + +0.1 1,715,557 - -0.4 1,715,557 - -0.2 1,715,557 - -0.2 1,715,557 - -0.2 1,715,557 - -0.1 1,715,557 - -0.7 1,715,557 - +0.7 1,715,557 - +0.3 1,715,557 - -0.5 1,715,557 - +0.1 1,715,557 - -1.1 1,715,601 + -0.5 1,715,601 + -1.0
Or see this region's nucleotide sequence