Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06480

Experiment: acetate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06475 and AO356_06480 are separated by 317 nucleotidesAO356_06480 and AO356_06485 are separated by 185 nucleotides AO356_06475: AO356_06475 - hypothetical protein, at 1,433,481 to 1,435,460 _06475 AO356_06480: AO356_06480 - hypothetical protein, at 1,435,778 to 1,436,335 _06480 AO356_06485: AO356_06485 - hypothetical protein, at 1,436,521 to 1,436,832 _06485 Position (kb) 1435 1436 1437Strain fitness (log2 ratio) -2 -1 0 1 2at 1434.887 kb on - strand, within AO356_06475at 1435.044 kb on - strand, within AO356_06475at 1435.056 kb on + strand, within AO356_06475at 1435.057 kb on - strand, within AO356_06475at 1435.238 kb on - strand, within AO356_06475at 1435.238 kb on - strand, within AO356_06475at 1435.238 kb on - strand, within AO356_06475at 1435.330 kb on + strandat 1435.331 kb on - strandat 1435.331 kb on - strandat 1435.331 kb on - strandat 1435.340 kb on - strandat 1435.349 kb on + strandat 1435.349 kb on + strandat 1435.349 kb on + strandat 1435.349 kb on + strandat 1435.349 kb on + strandat 1435.350 kb on - strandat 1435.350 kb on - strandat 1435.350 kb on - strandat 1435.350 kb on - strandat 1435.460 kb on + strandat 1435.460 kb on + strandat 1435.460 kb on + strandat 1435.460 kb on + strandat 1435.460 kb on + strandat 1435.460 kb on + strandat 1435.460 kb on + strandat 1435.461 kb on - strandat 1435.461 kb on - strandat 1435.461 kb on - strandat 1435.461 kb on - strandat 1435.461 kb on - strandat 1435.461 kb on - strandat 1435.461 kb on - strandat 1435.615 kb on + strandat 1435.615 kb on + strandat 1435.615 kb on + strandat 1435.616 kb on - strandat 1435.616 kb on - strandat 1435.616 kb on - strandat 1435.676 kb on - strandat 1435.717 kb on + strandat 1435.717 kb on + strandat 1435.717 kb on + strandat 1435.717 kb on + strandat 1435.718 kb on - strandat 1435.718 kb on - strandat 1435.718 kb on - strandat 1435.718 kb on - strandat 1435.718 kb on - strandat 1435.748 kb on + strandat 1435.749 kb on - strandat 1435.749 kb on - strandat 1435.890 kb on + strand, within AO356_06480at 1435.891 kb on - strand, within AO356_06480at 1435.891 kb on - strand, within AO356_06480at 1435.975 kb on + strand, within AO356_06480at 1435.976 kb on - strand, within AO356_06480at 1436.003 kb on + strand, within AO356_06480at 1436.003 kb on + strand, within AO356_06480at 1436.003 kb on + strand, within AO356_06480at 1436.003 kb on + strand, within AO356_06480at 1436.003 kb on + strand, within AO356_06480at 1436.003 kb on + strand, within AO356_06480at 1436.004 kb on - strand, within AO356_06480at 1436.004 kb on - strand, within AO356_06480at 1436.004 kb on - strand, within AO356_06480at 1436.004 kb on - strand, within AO356_06480at 1436.007 kb on + strand, within AO356_06480at 1436.007 kb on + strand, within AO356_06480at 1436.007 kb on + strand, within AO356_06480at 1436.081 kb on + strand, within AO356_06480at 1436.083 kb on + strand, within AO356_06480at 1436.083 kb on + strand, within AO356_06480at 1436.083 kb on + strand, within AO356_06480at 1436.084 kb on - strand, within AO356_06480at 1436.084 kb on - strand, within AO356_06480at 1436.084 kb on - strand, within AO356_06480at 1436.084 kb on - strand, within AO356_06480at 1436.094 kb on + strand, within AO356_06480at 1436.094 kb on + strand, within AO356_06480at 1436.094 kb on + strand, within AO356_06480at 1436.094 kb on + strand, within AO356_06480at 1436.094 kb on + strand, within AO356_06480at 1436.095 kb on - strand, within AO356_06480at 1436.095 kb on - strand, within AO356_06480at 1436.095 kb on - strand, within AO356_06480at 1436.095 kb on - strand, within AO356_06480at 1436.095 kb on - strand, within AO356_06480at 1436.095 kb on - strand, within AO356_06480at 1436.095 kb on - strand, within AO356_06480at 1436.095 kb on - strand, within AO356_06480at 1436.106 kb on + strand, within AO356_06480at 1436.137 kb on + strand, within AO356_06480at 1436.145 kb on + strand, within AO356_06480at 1436.151 kb on + strand, within AO356_06480at 1436.157 kb on + strand, within AO356_06480at 1436.158 kb on - strand, within AO356_06480at 1436.186 kb on + strand, within AO356_06480at 1436.186 kb on + strand, within AO356_06480at 1436.187 kb on - strand, within AO356_06480at 1436.187 kb on - strand, within AO356_06480at 1436.187 kb on - strand, within AO356_06480at 1436.251 kb on + strand, within AO356_06480at 1436.251 kb on + strand, within AO356_06480at 1436.251 kb on + strand, within AO356_06480at 1436.251 kb on + strand, within AO356_06480at 1436.252 kb on - strand, within AO356_06480at 1436.252 kb on - strand, within AO356_06480at 1436.252 kb on - strand, within AO356_06480at 1436.252 kb on - strand, within AO356_06480at 1436.252 kb on - strand, within AO356_06480at 1436.353 kb on + strandat 1436.365 kb on + strandat 1436.365 kb on + strandat 1436.365 kb on + strandat 1436.365 kb on + strandat 1436.365 kb on + strandat 1436.365 kb on + strandat 1436.365 kb on + strandat 1436.365 kb on + strandat 1436.365 kb on + strandat 1436.365 kb on + strandat 1436.366 kb on - strandat 1436.366 kb on - strandat 1436.366 kb on - strandat 1436.366 kb on - strandat 1436.366 kb on - strandat 1436.366 kb on - strandat 1436.367 kb on + strandat 1436.367 kb on + strandat 1436.367 kb on + strandat 1436.367 kb on + strandat 1436.367 kb on + strandat 1436.367 kb on + strandat 1436.367 kb on + strandat 1436.368 kb on - strandat 1436.368 kb on - strandat 1436.368 kb on - strandat 1436.368 kb on - strandat 1436.397 kb on + strandat 1436.397 kb on + strandat 1436.398 kb on - strandat 1436.398 kb on - strandat 1436.398 kb on - strandat 1436.398 kb on - strandat 1436.398 kb on - strandat 1436.398 kb on - strandat 1436.451 kb on + strandat 1436.451 kb on + strandat 1436.451 kb on + strandat 1436.452 kb on - strandat 1436.514 kb on + strandat 1436.514 kb on + strandat 1436.514 kb on + strandat 1436.515 kb on - strandat 1436.562 kb on - strand, within AO356_06485at 1436.620 kb on + strand, within AO356_06485at 1436.620 kb on + strand, within AO356_06485at 1436.676 kb on + strand, within AO356_06485at 1436.676 kb on + strand, within AO356_06485at 1436.676 kb on + strand, within AO356_06485at 1436.676 kb on + strand, within AO356_06485at 1436.676 kb on + strand, within AO356_06485at 1436.677 kb on - strand, within AO356_06485at 1436.734 kb on + strand, within AO356_06485at 1436.734 kb on + strand, within AO356_06485at 1436.734 kb on + strand, within AO356_06485at 1436.735 kb on - strand, within AO356_06485at 1436.735 kb on - strand, within AO356_06485at 1436.735 kb on - strand, within AO356_06485at 1436.860 kb on - strandat 1436.860 kb on - strandat 1436.945 kb on - strandat 1437.177 kb on + strandat 1437.177 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate 40 mM
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1,434,887 - AO356_06475 0.71 +0.7
1,435,044 - AO356_06475 0.79 +0.4
1,435,056 + AO356_06475 0.80 -0.7
1,435,057 - AO356_06475 0.80 +0.3
1,435,238 - AO356_06475 0.89 -0.9
1,435,238 - AO356_06475 0.89 -1.1
1,435,238 - AO356_06475 0.89 +0.6
1,435,330 + +0.0
1,435,331 - +1.0
1,435,331 - +0.7
1,435,331 - +1.9
1,435,340 - +0.7
1,435,349 + -0.4
1,435,349 + -0.2
1,435,349 + -0.1
1,435,349 + +1.0
1,435,349 + -2.0
1,435,350 - +0.4
1,435,350 - -0.4
1,435,350 - -0.7
1,435,350 - -1.9
1,435,460 + +0.1
1,435,460 + +0.1
1,435,460 + -0.3
1,435,460 + -0.5
1,435,460 + +0.2
1,435,460 + +0.4
1,435,460 + -0.1
1,435,461 - +0.6
1,435,461 - -0.6
1,435,461 - +0.7
1,435,461 - +0.4
1,435,461 - -0.3
1,435,461 - -0.1
1,435,461 - -0.5
1,435,615 + -0.5
1,435,615 + +0.4
1,435,615 + -1.7
1,435,616 - +0.5
1,435,616 - -0.9
1,435,616 - +0.3
1,435,676 - +0.3
1,435,717 + -0.6
1,435,717 + -0.2
1,435,717 + +0.2
1,435,717 + +0.6
1,435,718 - -1.4
1,435,718 - -1.3
1,435,718 - -0.5
1,435,718 - -1.2
1,435,718 - -0.2
1,435,748 + +0.8
1,435,749 - -0.0
1,435,749 - -0.5
1,435,890 + AO356_06480 0.20 +1.4
1,435,891 - AO356_06480 0.20 -0.0
1,435,891 - AO356_06480 0.20 +0.1
1,435,975 + AO356_06480 0.35 +0.0
1,435,976 - AO356_06480 0.35 +1.5
1,436,003 + AO356_06480 0.40 +0.8
1,436,003 + AO356_06480 0.40 +1.1
1,436,003 + AO356_06480 0.40 -0.3
1,436,003 + AO356_06480 0.40 +1.1
1,436,003 + AO356_06480 0.40 +2.0
1,436,003 + AO356_06480 0.40 +0.3
1,436,004 - AO356_06480 0.41 -0.8
1,436,004 - AO356_06480 0.41 +0.8
1,436,004 - AO356_06480 0.41 -0.1
1,436,004 - AO356_06480 0.41 +0.8
1,436,007 + AO356_06480 0.41 +0.7
1,436,007 + AO356_06480 0.41 +1.0
1,436,007 + AO356_06480 0.41 +1.2
1,436,081 + AO356_06480 0.54 -0.7
1,436,083 + AO356_06480 0.55 -0.3
1,436,083 + AO356_06480 0.55 +0.8
1,436,083 + AO356_06480 0.55 +0.4
1,436,084 - AO356_06480 0.55 +1.6
1,436,084 - AO356_06480 0.55 -0.0
1,436,084 - AO356_06480 0.55 +0.3
1,436,084 - AO356_06480 0.55 +0.3
1,436,094 + AO356_06480 0.57 -0.6
1,436,094 + AO356_06480 0.57 -0.0
1,436,094 + AO356_06480 0.57 +0.4
1,436,094 + AO356_06480 0.57 -0.3
1,436,094 + AO356_06480 0.57 +0.0
1,436,095 - AO356_06480 0.57 -0.7
1,436,095 - AO356_06480 0.57 +0.3
1,436,095 - AO356_06480 0.57 +0.5
1,436,095 - AO356_06480 0.57 -0.3
1,436,095 - AO356_06480 0.57 +1.0
1,436,095 - AO356_06480 0.57 +0.0
1,436,095 - AO356_06480 0.57 -0.5
1,436,095 - AO356_06480 0.57 +0.2
1,436,106 + AO356_06480 0.59 -1.0
1,436,137 + AO356_06480 0.64 -0.3
1,436,145 + AO356_06480 0.66 +0.2
1,436,151 + AO356_06480 0.67 +0.7
1,436,157 + AO356_06480 0.68 +0.2
1,436,158 - AO356_06480 0.68 -0.2
1,436,186 + AO356_06480 0.73 -0.1
1,436,186 + AO356_06480 0.73 +0.7
1,436,187 - AO356_06480 0.73 -1.6
1,436,187 - AO356_06480 0.73 +0.2
1,436,187 - AO356_06480 0.73 +0.2
1,436,251 + AO356_06480 0.85 -0.1
1,436,251 + AO356_06480 0.85 -0.7
1,436,251 + AO356_06480 0.85 -1.2
1,436,251 + AO356_06480 0.85 +0.1
1,436,252 - AO356_06480 0.85 +1.2
1,436,252 - AO356_06480 0.85 -0.1
1,436,252 - AO356_06480 0.85 -0.1
1,436,252 - AO356_06480 0.85 -0.1
1,436,252 - AO356_06480 0.85 -0.0
1,436,353 + -0.2
1,436,365 + +0.4
1,436,365 + +0.2
1,436,365 + +0.7
1,436,365 + +0.9
1,436,365 + +0.5
1,436,365 + +0.2
1,436,365 + +0.8
1,436,365 + -1.0
1,436,365 + +0.6
1,436,365 + +0.6
1,436,366 - +0.1
1,436,366 - +0.0
1,436,366 - +0.4
1,436,366 - -1.2
1,436,366 - +0.6
1,436,366 - -0.8
1,436,367 + +0.6
1,436,367 + -0.3
1,436,367 + -0.4
1,436,367 + -0.6
1,436,367 + -1.3
1,436,367 + +0.7
1,436,367 + +0.0
1,436,368 - +0.3
1,436,368 - -0.5
1,436,368 - +0.8
1,436,368 - +0.1
1,436,397 + -0.2
1,436,397 + +0.7
1,436,398 - +0.1
1,436,398 - -0.8
1,436,398 - -0.1
1,436,398 - +0.7
1,436,398 - -0.6
1,436,398 - -0.1
1,436,451 + +0.6
1,436,451 + -0.3
1,436,451 + +2.5
1,436,452 - +1.6
1,436,514 + -0.2
1,436,514 + -0.3
1,436,514 + -0.4
1,436,515 - -1.2
1,436,562 - AO356_06485 0.13 -0.3
1,436,620 + AO356_06485 0.32 -2.1
1,436,620 + AO356_06485 0.32 +0.4
1,436,676 + AO356_06485 0.50 -0.2
1,436,676 + AO356_06485 0.50 +0.8
1,436,676 + AO356_06485 0.50 +0.2
1,436,676 + AO356_06485 0.50 -0.6
1,436,676 + AO356_06485 0.50 +0.6
1,436,677 - AO356_06485 0.50 +0.3
1,436,734 + AO356_06485 0.68 -1.2
1,436,734 + AO356_06485 0.68 -0.0
1,436,734 + AO356_06485 0.68 +0.4
1,436,735 - AO356_06485 0.69 -0.7
1,436,735 - AO356_06485 0.69 +0.2
1,436,735 - AO356_06485 0.69 -0.5
1,436,860 - -0.1
1,436,860 - -0.6
1,436,945 - +0.8
1,437,177 + +0.1
1,437,177 + +0.9

Or see this region's nucleotide sequence