Experiment: acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03375 and AO356_03380 are separated by 80 nucleotides AO356_03380 and AO356_03385 overlap by 1 nucleotides AO356_03385 and AO356_03390 overlap by 4 nucleotides
AO356_03375: AO356_03375 - ExsB family protein, at 751,113 to 752,267
_03375
AO356_03380: AO356_03380 - glycosyl amidation-associated protein WbuZ, at 752,348 to 753,109
_03380
AO356_03385: AO356_03385 - imidazole glycerol phosphate synthase subunit HisH, at 753,109 to 753,717
_03385
AO356_03390: AO356_03390 - translocase, at 753,714 to 754,949
_03390
Position (kb) 752
753
754 Strain fitness (log2 ratio) -2
-1
0
1
2 at 751.394 kb on + strand, within AO356_03375 at 751.429 kb on + strand, within AO356_03375 at 751.538 kb on + strand, within AO356_03375 at 751.894 kb on + strand, within AO356_03375 at 752.354 kb on - strand at 752.519 kb on + strand, within AO356_03380 at 752.519 kb on + strand, within AO356_03380 at 752.520 kb on - strand, within AO356_03380 at 752.521 kb on + strand, within AO356_03380 at 752.521 kb on + strand, within AO356_03380 at 752.522 kb on - strand, within AO356_03380 at 752.522 kb on - strand, within AO356_03380 at 752.555 kb on + strand, within AO356_03380 at 752.588 kb on + strand, within AO356_03380 at 752.589 kb on - strand, within AO356_03380 at 752.589 kb on - strand, within AO356_03380 at 752.858 kb on - strand, within AO356_03380 at 752.882 kb on - strand, within AO356_03380 at 752.939 kb on + strand, within AO356_03380 at 752.939 kb on + strand, within AO356_03380 at 752.963 kb on + strand, within AO356_03380 at 753.116 kb on - strand at 753.190 kb on - strand, within AO356_03385 at 753.228 kb on - strand, within AO356_03385 at 753.272 kb on + strand, within AO356_03385 at 753.272 kb on + strand, within AO356_03385 at 753.340 kb on - strand, within AO356_03385 at 753.340 kb on - strand, within AO356_03385 at 753.425 kb on - strand, within AO356_03385 at 753.481 kb on + strand, within AO356_03385 at 753.481 kb on + strand, within AO356_03385 at 753.527 kb on - strand, within AO356_03385 at 753.532 kb on + strand, within AO356_03385 at 753.533 kb on - strand, within AO356_03385 at 753.666 kb on + strand at 753.667 kb on - strand at 753.683 kb on - strand at 753.684 kb on + strand at 753.698 kb on + strand at 753.710 kb on - strand at 753.732 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate 40 mM remove 751,394 + AO356_03375 0.24 +1.5 751,429 + AO356_03375 0.27 -1.1 751,538 + AO356_03375 0.37 -1.5 751,894 + AO356_03375 0.68 -1.8 752,354 - +1.8 752,519 + AO356_03380 0.22 -2.4 752,519 + AO356_03380 0.22 -0.3 752,520 - AO356_03380 0.23 -0.1 752,521 + AO356_03380 0.23 -0.5 752,521 + AO356_03380 0.23 -1.8 752,522 - AO356_03380 0.23 -0.5 752,522 - AO356_03380 0.23 -0.3 752,555 + AO356_03380 0.27 -1.3 752,588 + AO356_03380 0.31 -2.7 752,589 - AO356_03380 0.32 +1.4 752,589 - AO356_03380 0.32 -0.6 752,858 - AO356_03380 0.67 -0.2 752,882 - AO356_03380 0.70 -0.1 752,939 + AO356_03380 0.78 -2.4 752,939 + AO356_03380 0.78 +0.5 752,963 + AO356_03380 0.81 -1.7 753,116 - +0.5 753,190 - AO356_03385 0.13 -1.3 753,228 - AO356_03385 0.20 +0.4 753,272 + AO356_03385 0.27 -1.6 753,272 + AO356_03385 0.27 +0.5 753,340 - AO356_03385 0.38 -0.1 753,340 - AO356_03385 0.38 -0.4 753,425 - AO356_03385 0.52 -0.8 753,481 + AO356_03385 0.61 -1.3 753,481 + AO356_03385 0.61 +0.2 753,527 - AO356_03385 0.69 +0.2 753,532 + AO356_03385 0.69 -0.8 753,533 - AO356_03385 0.70 -0.5 753,666 + -0.6 753,667 - +0.6 753,683 - -0.9 753,684 + -0.6 753,698 + -0.1 753,710 - -0.6 753,732 - +0.5
Or see this region's nucleotide sequence