Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03290

Experiment: acetate 40 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_03280 and AO356_03285 are separated by 105 nucleotidesAO356_03285 and AO356_03290 are separated by 207 nucleotidesAO356_03290 and AO356_03295 are separated by 117 nucleotidesAO356_03295 and AO356_03300 are separated by 64 nucleotides AO356_03280: AO356_03280 - metal-chelation protein CHAD, at 727,141 to 727,902 _03280 AO356_03285: AO356_03285 - hypothetical protein, at 728,008 to 728,298 _03285 AO356_03290: AO356_03290 - alpha/beta hydrolase, at 728,506 to 729,543 _03290 AO356_03295: AO356_03295 - transcriptional regulator, at 729,661 to 730,359 _03295 AO356_03300: AO356_03300 - histidine kinase, at 730,424 to 733,075 _03300 Position (kb) 728 729 730Strain fitness (log2 ratio) -2 -1 0 1at 727.615 kb on + strand, within AO356_03280at 727.615 kb on + strand, within AO356_03280at 727.615 kb on + strand, within AO356_03280at 727.616 kb on - strand, within AO356_03280at 727.616 kb on - strand, within AO356_03280at 727.616 kb on - strand, within AO356_03280at 727.661 kb on + strand, within AO356_03280at 727.661 kb on + strand, within AO356_03280at 727.661 kb on + strand, within AO356_03280at 727.661 kb on + strand, within AO356_03280at 727.662 kb on - strand, within AO356_03280at 727.662 kb on - strand, within AO356_03280at 727.662 kb on - strand, within AO356_03280at 727.908 kb on + strandat 727.908 kb on + strandat 727.908 kb on + strandat 727.908 kb on + strandat 727.908 kb on + strandat 727.908 kb on + strandat 727.909 kb on - strandat 727.909 kb on - strandat 727.909 kb on - strandat 727.909 kb on - strandat 727.909 kb on - strandat 727.909 kb on - strandat 727.915 kb on + strandat 727.916 kb on - strandat 727.944 kb on + strandat 727.945 kb on - strandat 727.945 kb on - strandat 727.978 kb on + strandat 727.978 kb on + strandat 727.978 kb on + strandat 727.979 kb on - strandat 727.979 kb on - strandat 728.036 kb on + strandat 728.036 kb on + strandat 728.036 kb on + strandat 728.132 kb on + strand, within AO356_03285at 728.212 kb on - strand, within AO356_03285at 728.302 kb on + strandat 728.335 kb on + strandat 728.335 kb on + strandat 728.335 kb on + strandat 728.335 kb on + strandat 728.398 kb on + strandat 728.398 kb on + strandat 728.528 kb on + strandat 728.529 kb on - strandat 728.554 kb on + strandat 728.562 kb on + strandat 728.596 kb on + strandat 728.650 kb on + strand, within AO356_03290at 728.651 kb on - strand, within AO356_03290at 728.651 kb on - strand, within AO356_03290at 728.651 kb on - strand, within AO356_03290at 728.701 kb on + strand, within AO356_03290at 728.701 kb on + strand, within AO356_03290at 728.701 kb on + strand, within AO356_03290at 728.701 kb on + strand, within AO356_03290at 728.702 kb on - strand, within AO356_03290at 728.824 kb on + strand, within AO356_03290at 728.824 kb on + strand, within AO356_03290at 728.824 kb on + strand, within AO356_03290at 729.391 kb on + strand, within AO356_03290at 729.391 kb on + strand, within AO356_03290at 729.463 kb on + strandat 729.464 kb on - strandat 729.464 kb on - strandat 729.524 kb on - strandat 729.541 kb on + strandat 729.541 kb on + strandat 729.542 kb on - strandat 729.542 kb on - strandat 729.542 kb on - strandat 729.542 kb on - strandat 729.656 kb on + strandat 729.656 kb on + strandat 729.656 kb on + strandat 729.656 kb on + strandat 729.656 kb on + strandat 729.656 kb on + strandat 729.657 kb on - strandat 729.657 kb on - strandat 729.657 kb on - strandat 729.657 kb on - strandat 729.657 kb on - strandat 729.657 kb on - strandat 729.663 kb on - strandat 729.663 kb on - strandat 729.663 kb on - strandat 729.663 kb on - strandat 729.663 kb on - strandat 729.663 kb on - strandat 729.779 kb on + strand, within AO356_03295at 729.779 kb on + strand, within AO356_03295at 729.780 kb on - strand, within AO356_03295at 729.881 kb on + strand, within AO356_03295at 729.881 kb on + strand, within AO356_03295at 729.881 kb on + strand, within AO356_03295at 729.881 kb on + strand, within AO356_03295at 729.882 kb on - strand, within AO356_03295at 730.059 kb on - strand, within AO356_03295at 730.274 kb on + strand, within AO356_03295at 730.274 kb on + strand, within AO356_03295at 730.275 kb on - strand, within AO356_03295at 730.410 kb on + strandat 730.410 kb on + strandat 730.410 kb on + strandat 730.410 kb on + strandat 730.411 kb on - strandat 730.411 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate 40 mM
remove
727,615 + AO356_03280 0.62 +0.2
727,615 + AO356_03280 0.62 +0.2
727,615 + AO356_03280 0.62 -1.7
727,616 - AO356_03280 0.62 +0.2
727,616 - AO356_03280 0.62 +0.9
727,616 - AO356_03280 0.62 +0.8
727,661 + AO356_03280 0.68 -0.1
727,661 + AO356_03280 0.68 -0.3
727,661 + AO356_03280 0.68 +0.5
727,661 + AO356_03280 0.68 -1.6
727,662 - AO356_03280 0.68 +0.4
727,662 - AO356_03280 0.68 +0.4
727,662 - AO356_03280 0.68 -0.9
727,908 + +1.0
727,908 + +0.3
727,908 + +0.0
727,908 + +0.8
727,908 + -0.4
727,908 + +0.3
727,909 - +0.0
727,909 - -0.3
727,909 - -0.2
727,909 - -0.4
727,909 - +0.3
727,909 - -0.1
727,915 + -2.7
727,916 - +0.7
727,944 + +0.1
727,945 - -0.9
727,945 - -0.1
727,978 + +1.1
727,978 + +0.4
727,978 + -0.3
727,979 - -0.2
727,979 - -0.5
728,036 + -1.8
728,036 + +0.6
728,036 + +0.2
728,132 + AO356_03285 0.43 +1.1
728,212 - AO356_03285 0.70 -1.1
728,302 + -0.6
728,335 + -0.1
728,335 + -1.2
728,335 + +0.9
728,335 + +0.4
728,398 + +0.1
728,398 + +0.4
728,528 + -0.1
728,529 - -0.5
728,554 + +0.2
728,562 + -0.8
728,596 + -0.2
728,650 + AO356_03290 0.14 -0.4
728,651 - AO356_03290 0.14 +0.2
728,651 - AO356_03290 0.14 +0.0
728,651 - AO356_03290 0.14 +0.8
728,701 + AO356_03290 0.19 -1.8
728,701 + AO356_03290 0.19 +0.3
728,701 + AO356_03290 0.19 +1.2
728,701 + AO356_03290 0.19 +0.7
728,702 - AO356_03290 0.19 -0.1
728,824 + AO356_03290 0.31 +0.2
728,824 + AO356_03290 0.31 -1.2
728,824 + AO356_03290 0.31 +0.7
729,391 + AO356_03290 0.85 +0.1
729,391 + AO356_03290 0.85 +0.1
729,463 + -0.1
729,464 - -1.1
729,464 - -1.1
729,524 - -0.4
729,541 + +0.3
729,541 + +0.3
729,542 - -0.3
729,542 - -1.6
729,542 - +0.5
729,542 - -0.2
729,656 + +0.3
729,656 + +0.8
729,656 + +1.0
729,656 + -0.7
729,656 + +1.2
729,656 + +0.1
729,657 - -0.1
729,657 - +0.5
729,657 - -0.4
729,657 - +0.0
729,657 - -0.9
729,657 - +0.2
729,663 - -1.3
729,663 - -0.8
729,663 - +0.1
729,663 - +0.6
729,663 - +1.3
729,663 - -0.2
729,779 + AO356_03295 0.17 -0.9
729,779 + AO356_03295 0.17 -1.3
729,780 - AO356_03295 0.17 -0.5
729,881 + AO356_03295 0.31 +0.5
729,881 + AO356_03295 0.31 +1.0
729,881 + AO356_03295 0.31 -2.2
729,881 + AO356_03295 0.31 +1.6
729,882 - AO356_03295 0.32 -0.4
730,059 - AO356_03295 0.57 -0.2
730,274 + AO356_03295 0.88 -0.1
730,274 + AO356_03295 0.88 +0.4
730,275 - AO356_03295 0.88 -0.2
730,410 + -0.5
730,410 + -2.1
730,410 + +0.2
730,410 + +0.5
730,411 - +0.4
730,411 - -0.8

Or see this region's nucleotide sequence