Experiment: acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02480 and AO356_02485 are separated by 94 nucleotides AO356_02485 and AO356_02490 are separated by 76 nucleotides AO356_02490 and AO356_02495 are separated by 126 nucleotides AO356_02495 and AO356_02500 are separated by 66 nucleotides
AO356_02480: AO356_02480 - coproporphyrinogen III oxidase, at 538,668 to 540,050
_02480
AO356_02485: AO356_02485 - transcriptional regulator, at 540,145 to 540,879
_02485
AO356_02490: AO356_02490 - adenine phosphoribosyltransferase, at 540,956 to 541,504
_02490
AO356_02495: AO356_02495 - recombination protein RecR, at 541,631 to 542,233
_02495
AO356_02500: AO356_02500 - 2-alkenal reductase, at 542,300 to 543,334
_02500
Position (kb) 540
541
542 Strain fitness (log2 ratio) -2
-1
0
1
2 at 540.006 kb on + strand at 540.006 kb on + strand at 540.006 kb on + strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.044 kb on + strand at 540.093 kb on - strand at 540.115 kb on + strand at 540.116 kb on - strand at 540.116 kb on - strand at 540.116 kb on - strand at 540.116 kb on - strand at 540.366 kb on + strand, within AO356_02485 at 540.367 kb on - strand, within AO356_02485 at 540.530 kb on + strand, within AO356_02485 at 540.531 kb on - strand, within AO356_02485 at 540.606 kb on - strand, within AO356_02485 at 540.736 kb on + strand, within AO356_02485 at 540.793 kb on + strand, within AO356_02485 at 540.918 kb on + strand at 540.918 kb on + strand at 540.918 kb on + strand at 540.918 kb on + strand at 540.918 kb on + strand at 540.919 kb on - strand at 540.919 kb on - strand at 541.100 kb on + strand, within AO356_02490 at 541.100 kb on + strand, within AO356_02490 at 541.101 kb on - strand, within AO356_02490 at 541.173 kb on - strand, within AO356_02490 at 541.230 kb on + strand, within AO356_02490 at 541.230 kb on + strand, within AO356_02490 at 541.230 kb on + strand, within AO356_02490 at 541.231 kb on - strand, within AO356_02490 at 541.231 kb on - strand, within AO356_02490 at 541.502 kb on + strand at 541.502 kb on + strand at 541.557 kb on + strand at 541.632 kb on + strand at 541.770 kb on + strand, within AO356_02495 at 541.770 kb on + strand, within AO356_02495 at 541.771 kb on - strand, within AO356_02495 at 541.927 kb on - strand, within AO356_02495 at 541.959 kb on + strand, within AO356_02495 at 541.959 kb on + strand, within AO356_02495 at 541.959 kb on + strand, within AO356_02495 at 541.959 kb on + strand, within AO356_02495 at 541.959 kb on + strand, within AO356_02495 at 541.960 kb on - strand, within AO356_02495 at 542.057 kb on + strand, within AO356_02495 at 542.057 kb on + strand, within AO356_02495 at 542.072 kb on + strand, within AO356_02495 at 542.073 kb on - strand, within AO356_02495 at 542.073 kb on - strand, within AO356_02495 at 542.251 kb on + strand at 542.251 kb on + strand at 542.251 kb on + strand at 542.251 kb on + strand at 542.252 kb on - strand at 542.252 kb on - strand at 542.252 kb on - strand at 542.270 kb on - strand at 542.270 kb on - strand at 542.270 kb on - strand at 542.297 kb on + strand at 542.297 kb on + strand at 542.298 kb on - strand at 542.360 kb on - strand at 542.488 kb on + strand, within AO356_02500
Per-strain Table
Position Strand Gene LocusTag Fraction acetate 40 mM remove 540,006 + -0.1 540,006 + -0.1 540,006 + -0.9 540,007 - -1.2 540,007 - +0.2 540,007 - -1.1 540,044 + +1.1 540,093 - -0.9 540,115 + +1.2 540,116 - -1.9 540,116 - -0.5 540,116 - +0.0 540,116 - -1.4 540,366 + AO356_02485 0.30 -2.3 540,367 - AO356_02485 0.30 -1.8 540,530 + AO356_02485 0.52 -0.4 540,531 - AO356_02485 0.53 -0.6 540,606 - AO356_02485 0.63 -0.3 540,736 + AO356_02485 0.80 -2.0 540,793 + AO356_02485 0.88 -1.7 540,918 + +1.7 540,918 + +0.6 540,918 + -0.3 540,918 + +0.5 540,918 + +0.2 540,919 - -0.2 540,919 - +0.2 541,100 + AO356_02490 0.26 -0.9 541,100 + AO356_02490 0.26 +0.7 541,101 - AO356_02490 0.26 +0.0 541,173 - AO356_02490 0.40 +2.3 541,230 + AO356_02490 0.50 +1.2 541,230 + AO356_02490 0.50 +0.9 541,230 + AO356_02490 0.50 -0.8 541,231 - AO356_02490 0.50 -0.5 541,231 - AO356_02490 0.50 +0.4 541,502 + +0.4 541,502 + -1.3 541,557 + -0.3 541,632 + +1.0 541,770 + AO356_02495 0.23 -1.8 541,770 + AO356_02495 0.23 +0.4 541,771 - AO356_02495 0.23 -0.6 541,927 - AO356_02495 0.49 -1.0 541,959 + AO356_02495 0.54 -1.4 541,959 + AO356_02495 0.54 -0.5 541,959 + AO356_02495 0.54 -0.8 541,959 + AO356_02495 0.54 -1.3 541,959 + AO356_02495 0.54 -1.9 541,960 - AO356_02495 0.55 -0.4 542,057 + AO356_02495 0.71 +0.4 542,057 + AO356_02495 0.71 +1.5 542,072 + AO356_02495 0.73 -0.1 542,073 - AO356_02495 0.73 -0.2 542,073 - AO356_02495 0.73 -0.5 542,251 + -0.5 542,251 + -1.6 542,251 + -0.5 542,251 + +0.0 542,252 - -1.0 542,252 - +0.2 542,252 - -0.8 542,270 - -0.4 542,270 - +0.3 542,270 - -0.7 542,297 + -0.7 542,297 + +0.1 542,298 - +0.2 542,360 - -0.1 542,488 + AO356_02500 0.18 -0.5
Or see this region's nucleotide sequence