Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00140

Experiment: acetate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00135 and AO356_00140 are separated by 70 nucleotidesAO356_00140 and AO356_00150 are separated by 648 nucleotides AO356_00135: AO356_00135 - hypothetical protein, at 26,542 to 27,123 _00135 AO356_00140: AO356_00140 - hypothetical protein, at 27,194 to 27,451 _00140 AO356_00150: AO356_00150 - ABC transporter substrate-binding protein, at 28,100 to 28,864 _00150 Position (kb) 27 28Strain fitness (log2 ratio) -2 -1 0 1 2at 26.200 kb on + strandat 26.200 kb on + strandat 26.201 kb on - strandat 26.201 kb on - strandat 26.202 kb on + strandat 26.202 kb on + strandat 26.203 kb on - strandat 26.203 kb on - strandat 26.203 kb on - strandat 26.203 kb on - strandat 26.203 kb on - strandat 26.244 kb on + strandat 26.244 kb on + strandat 26.264 kb on - strandat 26.347 kb on - strandat 26.347 kb on - strandat 26.349 kb on + strandat 26.350 kb on - strandat 26.578 kb on + strandat 26.578 kb on + strandat 26.578 kb on + strandat 26.630 kb on + strand, within AO356_00135at 26.631 kb on - strand, within AO356_00135at 26.631 kb on - strand, within AO356_00135at 26.704 kb on + strand, within AO356_00135at 26.761 kb on + strand, within AO356_00135at 26.762 kb on - strand, within AO356_00135at 26.762 kb on - strand, within AO356_00135at 26.763 kb on + strand, within AO356_00135at 26.764 kb on - strand, within AO356_00135at 26.764 kb on - strand, within AO356_00135at 26.764 kb on - strand, within AO356_00135at 26.840 kb on - strand, within AO356_00135at 26.854 kb on - strand, within AO356_00135at 26.896 kb on + strand, within AO356_00135at 26.896 kb on + strand, within AO356_00135at 26.896 kb on + strand, within AO356_00135at 26.897 kb on - strand, within AO356_00135at 27.105 kb on + strandat 27.105 kb on + strandat 27.106 kb on - strandat 27.106 kb on - strandat 27.106 kb on - strandat 27.106 kb on - strandat 27.106 kb on - strandat 27.106 kb on - strandat 27.139 kb on + strandat 27.139 kb on + strandat 27.139 kb on + strandat 27.140 kb on - strandat 27.140 kb on - strandat 27.140 kb on - strandat 27.239 kb on + strand, within AO356_00140at 27.248 kb on + strand, within AO356_00140at 27.248 kb on + strand, within AO356_00140at 27.248 kb on + strand, within AO356_00140at 27.249 kb on - strand, within AO356_00140at 27.267 kb on - strand, within AO356_00140at 27.372 kb on + strand, within AO356_00140at 27.373 kb on - strand, within AO356_00140at 27.373 kb on - strand, within AO356_00140at 27.411 kb on + strand, within AO356_00140at 27.411 kb on + strand, within AO356_00140at 27.411 kb on + strand, within AO356_00140at 27.411 kb on + strand, within AO356_00140at 27.411 kb on + strand, within AO356_00140at 27.412 kb on - strand, within AO356_00140at 27.412 kb on - strand, within AO356_00140at 27.412 kb on - strand, within AO356_00140at 27.565 kb on + strandat 27.565 kb on + strandat 27.704 kb on + strandat 27.704 kb on + strandat 27.705 kb on - strandat 27.861 kb on + strandat 28.042 kb on + strandat 28.052 kb on + strandat 28.053 kb on - strandat 28.188 kb on + strand, within AO356_00150at 28.199 kb on + strand, within AO356_00150at 28.200 kb on - strand, within AO356_00150at 28.269 kb on + strand, within AO356_00150at 28.269 kb on + strand, within AO356_00150at 28.385 kb on + strand, within AO356_00150at 28.385 kb on + strand, within AO356_00150at 28.385 kb on + strand, within AO356_00150at 28.386 kb on - strand, within AO356_00150at 28.386 kb on - strand, within AO356_00150

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate 40 mM
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26,200 + -0.4
26,200 + +0.7
26,201 - +1.3
26,201 - -0.4
26,202 + +0.6
26,202 + -0.3
26,203 - -1.7
26,203 - +0.1
26,203 - +0.0
26,203 - -1.0
26,203 - +0.1
26,244 + +0.7
26,244 + +0.4
26,264 - +0.3
26,347 - +0.2
26,347 - -0.7
26,349 + -1.1
26,350 - +0.7
26,578 + -0.2
26,578 + -1.8
26,578 + +0.7
26,630 + AO356_00135 0.15 -0.3
26,631 - AO356_00135 0.15 -0.7
26,631 - AO356_00135 0.15 +0.2
26,704 + AO356_00135 0.28 +0.7
26,761 + AO356_00135 0.38 -0.6
26,762 - AO356_00135 0.38 -0.5
26,762 - AO356_00135 0.38 +0.8
26,763 + AO356_00135 0.38 +0.6
26,764 - AO356_00135 0.38 -0.4
26,764 - AO356_00135 0.38 +0.9
26,764 - AO356_00135 0.38 +0.7
26,840 - AO356_00135 0.51 +1.8
26,854 - AO356_00135 0.54 -0.1
26,896 + AO356_00135 0.61 +0.2
26,896 + AO356_00135 0.61 +0.1
26,896 + AO356_00135 0.61 -0.3
26,897 - AO356_00135 0.61 -1.7
27,105 + -0.9
27,105 + -0.7
27,106 - +0.9
27,106 - -0.5
27,106 - -1.3
27,106 - -0.4
27,106 - -1.0
27,106 - -0.2
27,139 + +0.8
27,139 + +1.1
27,139 + +0.5
27,140 - -0.8
27,140 - +1.0
27,140 - -0.8
27,239 + AO356_00140 0.17 -0.2
27,248 + AO356_00140 0.21 +0.2
27,248 + AO356_00140 0.21 -0.2
27,248 + AO356_00140 0.21 -0.5
27,249 - AO356_00140 0.21 +0.1
27,267 - AO356_00140 0.28 -0.4
27,372 + AO356_00140 0.69 -1.3
27,373 - AO356_00140 0.69 +1.0
27,373 - AO356_00140 0.69 +0.1
27,411 + AO356_00140 0.84 +0.1
27,411 + AO356_00140 0.84 -0.9
27,411 + AO356_00140 0.84 -0.3
27,411 + AO356_00140 0.84 -1.3
27,411 + AO356_00140 0.84 -0.4
27,412 - AO356_00140 0.84 -0.3
27,412 - AO356_00140 0.84 +0.2
27,412 - AO356_00140 0.84 +1.1
27,565 + +1.7
27,565 + -0.0
27,704 + -0.5
27,704 + +0.2
27,705 - -1.2
27,861 + +0.0
28,042 + -0.1
28,052 + +0.2
28,053 - +1.5
28,188 + AO356_00150 0.12 -0.2
28,199 + AO356_00150 0.13 -0.8
28,200 - AO356_00150 0.13 -0.2
28,269 + AO356_00150 0.22 +0.2
28,269 + AO356_00150 0.22 -1.0
28,385 + AO356_00150 0.37 +0.4
28,385 + AO356_00150 0.37 +0.3
28,385 + AO356_00150 0.37 -0.6
28,386 - AO356_00150 0.37 +0.9
28,386 - AO356_00150 0.37 +0.2

Or see this region's nucleotide sequence