Strain Fitness in Shewanella loihica PV-4 around Shew_3372

Experiment: Fusidic 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3371 and Shew_3372 are separated by 976 nucleotidesShew_3372 and Shew_3373 are separated by 225 nucleotides Shew_3371: Shew_3371 - hypothetical protein (RefSeq), at 4,019,944 to 4,020,363 _3371 Shew_3372: Shew_3372 - arginase/agmatinase/formiminoglutamase (RefSeq), at 4,021,340 to 4,022,383 _3372 Shew_3373: Shew_3373 - ubiquinone/menaquinone biosynthesis methyltransferase (RefSeq), at 4,022,609 to 4,023,364 _3373 Position (kb) 4021 4022 4023Strain fitness (log2 ratio) -1 0 1at 4020.351 kb on + strandat 4020.378 kb on - strandat 4020.658 kb on + strandat 4020.771 kb on + strandat 4020.922 kb on + strandat 4020.991 kb on - strandat 4021.165 kb on + strandat 4021.173 kb on - strandat 4021.185 kb on - strandat 4021.210 kb on + strandat 4021.637 kb on - strand, within Shew_3372at 4021.659 kb on + strand, within Shew_3372at 4021.659 kb on + strand, within Shew_3372at 4021.690 kb on + strand, within Shew_3372at 4021.698 kb on - strand, within Shew_3372at 4022.323 kb on - strandat 4022.419 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml
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4,020,351 + -0.1
4,020,378 - -0.2
4,020,658 + +0.4
4,020,771 + -0.0
4,020,922 + +0.3
4,020,991 - -0.0
4,021,165 + -0.3
4,021,173 - -0.3
4,021,185 - -1.0
4,021,210 + +0.4
4,021,637 - Shew_3372 0.28 +0.3
4,021,659 + Shew_3372 0.31 -0.2
4,021,659 + Shew_3372 0.31 +0.2
4,021,690 + Shew_3372 0.34 -0.6
4,021,698 - Shew_3372 0.34 -0.6
4,022,323 - -0.2
4,022,419 + +1.2

Or see this region's nucleotide sequence