Strain Fitness in Shewanella loihica PV-4 around Shew_2963
Experiment: Fusidic 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Fusidic 0.0625 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,515,101 | - | Shew_2962 | 0.66 | +1.2 | |
3,515,101 | - | Shew_2962 | 0.66 | +1.7 | |
3,515,120 | - | Shew_2962 | 0.67 | +0.3 | |
3,515,431 | - | Shew_2962 | 0.86 | +1.3 | |
3,515,503 | - | Shew_2962 | 0.90 | +1.2 | |
3,515,817 | + | +0.2 | |||
3,516,053 | + | Shew_2963 | 0.37 | +1.9 | |
3,516,181 | - | Shew_2963 | 0.64 | +0.4 | |
3,516,580 | - | Shew_2964 | 0.15 | +0.1 | |
3,516,604 | + | Shew_2964 | 0.18 | +0.2 | |
3,516,635 | - | Shew_2964 | 0.20 | -0.3 | |
3,516,766 | - | Shew_2964 | 0.32 | -0.6 | |
3,517,115 | - | Shew_2964 | 0.62 | -0.4 |
Or see this region's nucleotide sequence