Experiment: Fusidic 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2697 and Shew_2698 are separated by 167 nucleotides Shew_2698 and Shew_2699 are separated by 221 nucleotides Shew_2699 and Shew_2700 are separated by 153 nucleotides
Shew_2697: Shew_2697 - hypothetical protein (RefSeq), at 3,192,364 to 3,193,740
_2697
Shew_2698: Shew_2698 - hypothetical protein (RefSeq), at 3,193,908 to 3,194,420
_2698
Shew_2699: Shew_2699 - cyclic nucleotide-binding protein (RefSeq), at 3,194,642 to 3,195,220
_2699
Shew_2700: Shew_2700 - antibiotic biosynthesis monooxygenase (RefSeq), at 3,195,374 to 3,195,763
_2700
Position (kb)
3193
3194
3195 Strain fitness (log2 ratio)
-2
-1
0
1 at 3193.022 kb on - strand, within Shew_2697 at 3193.108 kb on + strand, within Shew_2697 at 3193.223 kb on - strand, within Shew_2697 at 3193.501 kb on + strand, within Shew_2697 at 3193.927 kb on - strand at 3194.007 kb on - strand, within Shew_2698 at 3194.266 kb on + strand, within Shew_2698 at 3194.647 kb on - strand at 3194.663 kb on - strand at 3195.290 kb on - strand at 3195.338 kb on - strand at 3195.338 kb on - strand at 3195.338 kb on - strand at 3195.359 kb on + strand at 3195.407 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml remove 3,193,022 - Shew_2697 0.48 +0.1 3,193,108 + Shew_2697 0.54 +0.9 3,193,223 - Shew_2697 0.62 +0.1 3,193,501 + Shew_2697 0.83 -0.1 3,193,927 - -0.1 3,194,007 - Shew_2698 0.19 -1.2 3,194,266 + Shew_2698 0.70 -0.0 3,194,647 - -2.3 3,194,663 - -0.1 3,195,290 - -0.0 3,195,338 - +0.1 3,195,338 - +0.1 3,195,338 - +0.4 3,195,359 + -0.1 3,195,407 - -0.2
Or see this region's nucleotide sequence