Strain Fitness in Shewanella loihica PV-4 around Shew_1697

Experiment: Fusidic 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1696 and Shew_1697 are separated by 51 nucleotidesShew_1697 and Shew_1698 are separated by 279 nucleotides Shew_1696: Shew_1696 - hypothetical protein (RefSeq), at 1,949,748 to 1,950,644 _1696 Shew_1697: Shew_1697 - amino acid-binding ACT domain-containing protein (RefSeq), at 1,950,696 to 1,951,193 _1697 Shew_1698: Shew_1698 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,951,473 to 1,953,731 _1698 Position (kb) 1950 1951 1952Strain fitness (log2 ratio) -1 0 1 2at 1949.789 kb on + strandat 1949.888 kb on + strand, within Shew_1696at 1949.901 kb on - strand, within Shew_1696at 1950.274 kb on + strand, within Shew_1696at 1950.322 kb on + strand, within Shew_1696at 1950.394 kb on + strand, within Shew_1696at 1950.721 kb on - strandat 1950.801 kb on + strand, within Shew_1697at 1950.920 kb on - strand, within Shew_1697at 1950.928 kb on - strand, within Shew_1697at 1951.088 kb on + strand, within Shew_1697at 1951.088 kb on + strand, within Shew_1697at 1951.096 kb on - strand, within Shew_1697at 1951.096 kb on - strand, within Shew_1697at 1951.096 kb on - strand, within Shew_1697at 1951.096 kb on - strand, within Shew_1697at 1951.219 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml
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1,949,789 + -1.1
1,949,888 + Shew_1696 0.16 +0.0
1,949,901 - Shew_1696 0.17 -0.2
1,950,274 + Shew_1696 0.59 -0.1
1,950,322 + Shew_1696 0.64 -0.1
1,950,394 + Shew_1696 0.72 +0.0
1,950,721 - +2.1
1,950,801 + Shew_1697 0.21 +1.1
1,950,920 - Shew_1697 0.45 +0.6
1,950,928 - Shew_1697 0.47 -0.4
1,951,088 + Shew_1697 0.79 +0.4
1,951,088 + Shew_1697 0.79 -0.1
1,951,096 - Shew_1697 0.80 -0.0
1,951,096 - Shew_1697 0.80 +1.0
1,951,096 - Shew_1697 0.80 +1.3
1,951,096 - Shew_1697 0.80 +0.3
1,951,219 - +0.2

Or see this region's nucleotide sequence