Strain Fitness in Shewanella loihica PV-4 around Shew_0970

Experiment: Fusidic 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0969 and Shew_0970 are separated by 183 nucleotidesShew_0970 and Shew_0971 are separated by 443 nucleotides Shew_0969: Shew_0969 - FAD dependent oxidoreductase (RefSeq), at 1,112,831 to 1,114,135 _0969 Shew_0970: Shew_0970 - XRE family transcriptional regulator (RefSeq), at 1,114,319 to 1,114,867 _0970 Shew_0971: Shew_0971 - peptidase C26 (RefSeq), at 1,115,311 to 1,116,072 _0971 Position (kb) 1114 1115Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1113.335 kb on + strand, within Shew_0969at 1113.509 kb on + strand, within Shew_0969at 1113.762 kb on - strand, within Shew_0969at 1113.793 kb on - strand, within Shew_0969at 1113.795 kb on + strand, within Shew_0969at 1114.127 kb on - strandat 1114.336 kb on + strandat 1114.516 kb on - strand, within Shew_0970at 1114.614 kb on - strand, within Shew_0970at 1115.365 kb on + strandat 1115.615 kb on - strand, within Shew_0971at 1115.789 kb on + strand, within Shew_0971at 1115.811 kb on + strand, within Shew_0971at 1115.858 kb on + strand, within Shew_0971

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml
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1,113,335 + Shew_0969 0.39 -0.1
1,113,509 + Shew_0969 0.52 -0.1
1,113,762 - Shew_0969 0.71 -0.4
1,113,793 - Shew_0969 0.74 -0.2
1,113,795 + Shew_0969 0.74 +0.2
1,114,127 - +0.2
1,114,336 + -5.8
1,114,516 - Shew_0970 0.36 -5.0
1,114,614 - Shew_0970 0.54 -5.3
1,115,365 + +0.6
1,115,615 - Shew_0971 0.40 +0.7
1,115,789 + Shew_0971 0.63 +0.3
1,115,811 + Shew_0971 0.66 -0.3
1,115,858 + Shew_0971 0.72 -3.0

Or see this region's nucleotide sequence