Experiment: Fusidic 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0816 and Shew_0817 are separated by 11 nucleotides Shew_0817 and Shew_0818 are separated by 167 nucleotides Shew_0818 and Shew_0819 are separated by 40 nucleotides Shew_0819 and Shew_0820 are separated by 49 nucleotides
Shew_0816: Shew_0816 - hypothetical protein (RefSeq), at 940,252 to 940,788
_0816
Shew_0817: Shew_0817 - cupin 2 domain-containing protein (RefSeq), at 940,800 to 941,117
_0817
Shew_0818: Shew_0818 - peptidase U32 (RefSeq), at 941,285 to 943,198
_0818
Shew_0819: Shew_0819 - hypothetical protein (RefSeq), at 943,239 to 943,613
_0819
Shew_0820: Shew_0820 - hypothetical protein (RefSeq), at 943,663 to 944,850
_0820
Position (kb) 941
942
943
944 Strain fitness (log2 ratio) -2
-1
0
1 at 940.489 kb on - strand, within Shew_0816 at 940.722 kb on + strand, within Shew_0816 at 940.773 kb on + strand at 941.015 kb on - strand, within Shew_0817 at 941.637 kb on - strand, within Shew_0818 at 941.743 kb on + strand, within Shew_0818 at 941.762 kb on - strand, within Shew_0818 at 941.797 kb on + strand, within Shew_0818 at 942.071 kb on + strand, within Shew_0818 at 942.079 kb on - strand, within Shew_0818 at 942.180 kb on + strand, within Shew_0818 at 942.293 kb on - strand, within Shew_0818 at 942.534 kb on - strand, within Shew_0818 at 942.661 kb on + strand, within Shew_0818 at 942.721 kb on - strand, within Shew_0818 at 942.896 kb on + strand, within Shew_0818 at 943.632 kb on - strand at 943.666 kb on + strand at 943.732 kb on - strand at 943.825 kb on - strand, within Shew_0820 at 943.926 kb on + strand, within Shew_0820 at 943.926 kb on + strand, within Shew_0820 at 943.926 kb on + strand, within Shew_0820 at 943.934 kb on - strand, within Shew_0820 at 943.934 kb on - strand, within Shew_0820 at 944.183 kb on - strand, within Shew_0820
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml remove 940,489 - Shew_0816 0.44 +0.3 940,722 + Shew_0816 0.88 +0.1 940,773 + +0.1 941,015 - Shew_0817 0.68 +0.3 941,637 - Shew_0818 0.18 +0.5 941,743 + Shew_0818 0.24 -1.9 941,762 - Shew_0818 0.25 +0.6 941,797 + Shew_0818 0.27 +0.3 942,071 + Shew_0818 0.41 +0.3 942,079 - Shew_0818 0.41 +1.4 942,180 + Shew_0818 0.47 +0.3 942,293 - Shew_0818 0.53 +0.4 942,534 - Shew_0818 0.65 +0.5 942,661 + Shew_0818 0.72 +0.5 942,721 - Shew_0818 0.75 +0.4 942,896 + Shew_0818 0.84 -1.8 943,632 - +0.3 943,666 + +0.3 943,732 - -0.3 943,825 - Shew_0820 0.14 -0.1 943,926 + Shew_0820 0.22 +0.1 943,926 + Shew_0820 0.22 -0.2 943,926 + Shew_0820 0.22 -0.3 943,934 - Shew_0820 0.23 -0.0 943,934 - Shew_0820 0.23 +0.4 944,183 - Shew_0820 0.44 -0.1
Or see this region's nucleotide sequence