Strain Fitness in Shewanella loihica PV-4 around Shew_0318

Experiment: Fusidic 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0316 and Shew_0317 are separated by 55 nucleotidesShew_0317 and hemC are separated by 2 nucleotideshemC and cyaA are separated by 185 nucleotides Shew_0316: Shew_0316 - protein of unknown function DUF513, hemX (RefSeq), at 361,731 to 362,873 _0316 Shew_0317: Shew_0317 - uroporphyrinogen III synthase HEM4 (RefSeq), at 362,929 to 363,660 _0317 Shew_0318: hemC - porphobilinogen deaminase (RefSeq), at 363,663 to 364,616 hemC Shew_0319: cyaA - adenylate cyclase (RefSeq), at 364,802 to 367,222 cyaA Position (kb) 363 364 365Strain fitness (log2 ratio) -1 0 1at 362.884 kb on + strandat 362.949 kb on - strandat 364.765 kb on + strandat 365.033 kb on - strandat 365.042 kb on + strandat 365.196 kb on + strand, within cyaAat 365.297 kb on + strand, within cyaAat 365.317 kb on - strand, within cyaAat 365.458 kb on - strand, within cyaAat 365.510 kb on + strand, within cyaAat 365.510 kb on + strand, within cyaAat 365.518 kb on - strand, within cyaA

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml
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362,884 + +0.4
362,949 - +1.0
364,765 + -0.7
365,033 - +0.1
365,042 + -0.0
365,196 + cyaA Shew_0319 0.16 +0.1
365,297 + cyaA Shew_0319 0.20 -0.2
365,317 - cyaA Shew_0319 0.21 +0.3
365,458 - cyaA Shew_0319 0.27 +0.3
365,510 + cyaA Shew_0319 0.29 -0.1
365,510 + cyaA Shew_0319 0.29 +0.3
365,518 - cyaA Shew_0319 0.30 +0.2

Or see this region's nucleotide sequence