Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3099

Experiment: Cytosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3097 and Dshi_3098 are separated by 35 nucleotidesDshi_3098 and Dshi_3099 overlap by 4 nucleotidesDshi_3099 and Dshi_3100 are separated by 16 nucleotides Dshi_3097: Dshi_3097 - glutamate--cysteine ligase (RefSeq), at 3,264,516 to 3,265,886 _3097 Dshi_3098: Dshi_3098 - hypothetical protein (RefSeq), at 3,265,922 to 3,266,470 _3098 Dshi_3099: Dshi_3099 - protein of unknown function DUF558 (RefSeq), at 3,266,467 to 3,267,216 _3099 Dshi_3100: Dshi_3100 - 4-hydroxybenzoate polyprenyl transferase (RefSeq), at 3,267,233 to 3,268,201 _3100 Position (kb) 3266 3267 3268Strain fitness (log2 ratio) -1 0 1at 3265.898 kb on - strandat 3266.332 kb on - strand, within Dshi_3098at 3266.332 kb on - strand, within Dshi_3098at 3266.401 kb on + strand, within Dshi_3098at 3266.401 kb on + strand, within Dshi_3098at 3266.401 kb on + strand, within Dshi_3098at 3266.409 kb on - strand, within Dshi_3098at 3266.506 kb on - strandat 3266.572 kb on - strand, within Dshi_3099at 3266.711 kb on + strand, within Dshi_3099at 3266.972 kb on - strand, within Dshi_3099at 3266.998 kb on - strand, within Dshi_3099at 3267.010 kb on - strand, within Dshi_3099at 3267.070 kb on + strand, within Dshi_3099at 3267.095 kb on + strand, within Dshi_3099at 3267.185 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
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3,265,898 - -0.3
3,266,332 - Dshi_3098 0.75 -0.7
3,266,332 - Dshi_3098 0.75 -0.1
3,266,401 + Dshi_3098 0.87 -1.2
3,266,401 + Dshi_3098 0.87 -0.0
3,266,401 + Dshi_3098 0.87 -0.8
3,266,409 - Dshi_3098 0.89 +0.2
3,266,506 - -0.6
3,266,572 - Dshi_3099 0.14 -1.3
3,266,711 + Dshi_3099 0.33 +1.7
3,266,972 - Dshi_3099 0.67 -1.1
3,266,998 - Dshi_3099 0.71 -1.3
3,267,010 - Dshi_3099 0.72 -1.3
3,267,070 + Dshi_3099 0.80 -0.9
3,267,095 + Dshi_3099 0.84 -1.1
3,267,185 - -0.6

Or see this region's nucleotide sequence