Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2940

Experiment: Cytosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2939 and Dshi_2940 are separated by 48 nucleotidesDshi_2940 and Dshi_2941 are separated by 3 nucleotides Dshi_2939: Dshi_2939 - ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq), at 3,096,331 to 3,098,658 _2939 Dshi_2940: Dshi_2940 - OmpA/MotB domain protein (RefSeq), at 3,098,707 to 3,100,653 _2940 Dshi_2941: Dshi_2941 - hypothetical protein (RefSeq), at 3,100,657 to 3,101,940 _2941 Position (kb) 3098 3099 3100 3101Strain fitness (log2 ratio) -3 -2 -1 0 1at 3097.752 kb on - strand, within Dshi_2939at 3097.779 kb on - strand, within Dshi_2939at 3097.975 kb on + strand, within Dshi_2939at 3098.051 kb on + strand, within Dshi_2939at 3098.091 kb on - strand, within Dshi_2939at 3099.207 kb on + strand, within Dshi_2940at 3099.215 kb on - strand, within Dshi_2940at 3099.231 kb on + strand, within Dshi_2940at 3099.341 kb on + strand, within Dshi_2940at 3099.652 kb on - strand, within Dshi_2940at 3099.862 kb on + strand, within Dshi_2940at 3100.160 kb on + strand, within Dshi_2940at 3100.324 kb on - strand, within Dshi_2940at 3100.734 kb on - strandat 3101.119 kb on + strand, within Dshi_2941

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
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3,097,752 - Dshi_2939 0.61 -0.7
3,097,779 - Dshi_2939 0.62 -0.9
3,097,975 + Dshi_2939 0.71 -0.1
3,098,051 + Dshi_2939 0.74 +1.2
3,098,091 - Dshi_2939 0.76 -1.7
3,099,207 + Dshi_2940 0.26 +0.9
3,099,215 - Dshi_2940 0.26 -2.3
3,099,231 + Dshi_2940 0.27 -1.9
3,099,341 + Dshi_2940 0.33 -1.1
3,099,652 - Dshi_2940 0.49 -0.8
3,099,862 + Dshi_2940 0.59 -0.4
3,100,160 + Dshi_2940 0.75 -0.2
3,100,324 - Dshi_2940 0.83 -2.9
3,100,734 - -0.8
3,101,119 + Dshi_2941 0.36 -2.4

Or see this region's nucleotide sequence