Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2793

Experiment: Cytosine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_2792 and Dshi_2793 overlap by 4 nucleotidesDshi_2793 and Dshi_2794 are separated by 22 nucleotides Dshi_2792: Dshi_2792 - toxic anion resistance family protein (RefSeq), at 2,950,980 to 2,952,173 _2792 Dshi_2793: Dshi_2793 - lipoprotein, putative (RefSeq), at 2,952,170 to 2,953,117 _2793 Dshi_2794: Dshi_2794 - hypothetical protein (RefSeq), at 2,953,140 to 2,954,270 _2794 Position (kb) 2952 2953 2954Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2951.191 kb on - strand, within Dshi_2792at 2951.247 kb on + strand, within Dshi_2792at 2951.390 kb on + strand, within Dshi_2792at 2951.390 kb on + strand, within Dshi_2792at 2951.447 kb on + strand, within Dshi_2792at 2951.565 kb on - strand, within Dshi_2792at 2951.587 kb on - strand, within Dshi_2792at 2951.608 kb on + strand, within Dshi_2792at 2951.623 kb on + strand, within Dshi_2792at 2951.696 kb on + strand, within Dshi_2792at 2951.778 kb on + strand, within Dshi_2792at 2951.780 kb on + strand, within Dshi_2792at 2951.788 kb on - strand, within Dshi_2792at 2951.794 kb on - strand, within Dshi_2792at 2951.813 kb on + strand, within Dshi_2792at 2951.847 kb on + strand, within Dshi_2792at 2952.009 kb on + strand, within Dshi_2792at 2952.127 kb on - strandat 2952.147 kb on + strandat 2952.470 kb on - strand, within Dshi_2793at 2952.470 kb on - strand, within Dshi_2793at 2952.581 kb on + strand, within Dshi_2793at 2952.581 kb on + strand, within Dshi_2793at 2952.581 kb on + strand, within Dshi_2793at 2952.589 kb on - strand, within Dshi_2793at 2952.589 kb on - strand, within Dshi_2793at 2952.667 kb on + strand, within Dshi_2793at 2952.817 kb on - strand, within Dshi_2793at 2952.833 kb on + strand, within Dshi_2793at 2952.918 kb on + strand, within Dshi_2793at 2952.947 kb on - strand, within Dshi_2793at 2952.960 kb on - strand, within Dshi_2793at 2953.089 kb on + strandat 2953.121 kb on - strandat 2953.260 kb on + strand, within Dshi_2794at 2953.365 kb on + strand, within Dshi_2794at 2953.377 kb on + strand, within Dshi_2794at 2953.445 kb on + strand, within Dshi_2794at 2953.517 kb on - strand, within Dshi_2794at 2953.542 kb on - strand, within Dshi_2794at 2953.605 kb on + strand, within Dshi_2794at 2953.712 kb on + strand, within Dshi_2794at 2953.826 kb on - strand, within Dshi_2794at 2953.842 kb on + strand, within Dshi_2794at 2954.048 kb on + strand, within Dshi_2794

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
remove
2,951,191 - Dshi_2792 0.18 +0.8
2,951,247 + Dshi_2792 0.22 -1.1
2,951,390 + Dshi_2792 0.34 +0.4
2,951,390 + Dshi_2792 0.34 -1.0
2,951,447 + Dshi_2792 0.39 +0.6
2,951,565 - Dshi_2792 0.49 -0.8
2,951,587 - Dshi_2792 0.51 -0.6
2,951,608 + Dshi_2792 0.53 -0.6
2,951,623 + Dshi_2792 0.54 -1.7
2,951,696 + Dshi_2792 0.60 -0.9
2,951,778 + Dshi_2792 0.67 -0.6
2,951,780 + Dshi_2792 0.67 +1.6
2,951,788 - Dshi_2792 0.68 -0.6
2,951,794 - Dshi_2792 0.68 -1.2
2,951,813 + Dshi_2792 0.70 -2.1
2,951,847 + Dshi_2792 0.73 +0.0
2,952,009 + Dshi_2792 0.86 -0.5
2,952,127 - +0.1
2,952,147 + +1.2
2,952,470 - Dshi_2793 0.32 -0.3
2,952,470 - Dshi_2793 0.32 -0.7
2,952,581 + Dshi_2793 0.43 -1.9
2,952,581 + Dshi_2793 0.43 -0.2
2,952,581 + Dshi_2793 0.43 -1.0
2,952,589 - Dshi_2793 0.44 -1.0
2,952,589 - Dshi_2793 0.44 -0.8
2,952,667 + Dshi_2793 0.52 +0.5
2,952,817 - Dshi_2793 0.68 -0.8
2,952,833 + Dshi_2793 0.70 -1.1
2,952,918 + Dshi_2793 0.79 -1.0
2,952,947 - Dshi_2793 0.82 -0.3
2,952,960 - Dshi_2793 0.83 -1.9
2,953,089 + -0.6
2,953,121 - +3.2
2,953,260 + Dshi_2794 0.11 -1.2
2,953,365 + Dshi_2794 0.20 -0.4
2,953,377 + Dshi_2794 0.21 -0.4
2,953,445 + Dshi_2794 0.27 -0.6
2,953,517 - Dshi_2794 0.33 +0.1
2,953,542 - Dshi_2794 0.36 +0.2
2,953,605 + Dshi_2794 0.41 -1.1
2,953,712 + Dshi_2794 0.51 -0.4
2,953,826 - Dshi_2794 0.61 +0.7
2,953,842 + Dshi_2794 0.62 -0.8
2,954,048 + Dshi_2794 0.80 +0.3

Or see this region's nucleotide sequence