Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2730 and Dshi_2731 overlap by 1 nucleotides Dshi_2731 and Dshi_2732 are separated by 71 nucleotides Dshi_2732 and Dshi_2733 are separated by 112 nucleotides
Dshi_2730: Dshi_2730 - FG-GAP repeat domain protein (RefSeq), at 2,892,698 to 2,893,456
_2730
Dshi_2731: Dshi_2731 - ferredoxin (RefSeq), at 2,893,456 to 2,893,779
_2731
Dshi_2732: Dshi_2732 - nucleic acid binding OB-fold tRNA/helicase-type (RefSeq), at 2,893,851 to 2,894,264
_2732
Dshi_2733: Dshi_2733 - protease Do (RefSeq), at 2,894,377 to 2,895,882
_2733
Position (kb)
2893
2894
2895 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2892.861 kb on - strand, within Dshi_2730 at 2893.016 kb on - strand, within Dshi_2730 at 2893.019 kb on - strand, within Dshi_2730 at 2893.031 kb on + strand, within Dshi_2730 at 2893.145 kb on + strand, within Dshi_2730 at 2893.248 kb on - strand, within Dshi_2730 at 2893.955 kb on - strand, within Dshi_2732 at 2894.150 kb on + strand, within Dshi_2732 at 2894.253 kb on + strand at 2894.297 kb on - strand at 2894.564 kb on - strand, within Dshi_2733 at 2894.688 kb on - strand, within Dshi_2733 at 2894.760 kb on - strand, within Dshi_2733 at 2894.785 kb on + strand, within Dshi_2733 at 2894.792 kb on + strand, within Dshi_2733 at 2894.837 kb on - strand at 2894.954 kb on - strand, within Dshi_2733 at 2895.133 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 2,892,861 - Dshi_2730 0.21 -0.5 2,893,016 - Dshi_2730 0.42 +0.3 2,893,019 - Dshi_2730 0.42 -0.7 2,893,031 + Dshi_2730 0.44 -0.1 2,893,145 + Dshi_2730 0.59 +0.5 2,893,248 - Dshi_2730 0.72 +1.2 2,893,955 - Dshi_2732 0.25 +1.0 2,894,150 + Dshi_2732 0.72 -0.3 2,894,253 + +0.5 2,894,297 - -0.6 2,894,564 - Dshi_2733 0.12 -1.1 2,894,688 - Dshi_2733 0.21 -0.8 2,894,760 - Dshi_2733 0.25 -0.5 2,894,785 + Dshi_2733 0.27 +0.4 2,894,792 + Dshi_2733 0.28 -3.4 2,894,837 - -2.2 2,894,954 - Dshi_2733 0.38 -2.1 2,895,133 - -1.8
Or see this region's nucleotide sequence