Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1141

Experiment: Cytosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1140 and Dshi_1141 are separated by 20 nucleotidesDshi_1141 and Dshi_1142 are separated by 3 nucleotidesDshi_1142 and Dshi_1143 overlap by 4 nucleotidesDshi_1143 and Dshi_1144 are separated by 21 nucleotides Dshi_1140: Dshi_1140 - Cytochrome c oxidase subunit II (RefSeq), at 1,168,156 to 1,168,968 _1140 Dshi_1141: Dshi_1141 - protoheme IX farnesyltransferase (RefSeq), at 1,168,989 to 1,169,975 _1141 Dshi_1142: Dshi_1142 - hypothetical protein (RefSeq), at 1,169,979 to 1,170,164 _1142 Dshi_1143: Dshi_1143 - cytochrome c oxidase assembly protein CtaG/Cox11 (RefSeq), at 1,170,161 to 1,170,772 _1143 Dshi_1144: Dshi_1144 - cytochrome c oxidase subunit III (RefSeq), at 1,170,794 to 1,171,600 _1144 Position (kb) 1168 1169 1170Strain fitness (log2 ratio) -2 -1 0 1at 1168.149 kb on - strandat 1168.467 kb on + strand, within Dshi_1140at 1168.467 kb on + strand, within Dshi_1140at 1168.536 kb on + strand, within Dshi_1140at 1168.690 kb on - strand, within Dshi_1140at 1168.730 kb on - strand, within Dshi_1140at 1169.040 kb on + strandat 1169.150 kb on + strand, within Dshi_1141at 1169.361 kb on + strand, within Dshi_1141at 1169.581 kb on - strand, within Dshi_1141at 1169.647 kb on + strand, within Dshi_1141at 1169.657 kb on + strand, within Dshi_1141at 1169.843 kb on + strand, within Dshi_1141at 1169.909 kb on + strandat 1170.002 kb on + strand, within Dshi_1142at 1170.118 kb on + strand, within Dshi_1142at 1170.673 kb on + strand, within Dshi_1143

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
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1,168,149 - -1.9
1,168,467 + Dshi_1140 0.38 -1.3
1,168,467 + Dshi_1140 0.38 -0.3
1,168,536 + Dshi_1140 0.47 -0.5
1,168,690 - Dshi_1140 0.66 -1.5
1,168,730 - Dshi_1140 0.71 -0.7
1,169,040 + -0.4
1,169,150 + Dshi_1141 0.16 -0.9
1,169,361 + Dshi_1141 0.38 +0.7
1,169,581 - Dshi_1141 0.60 -0.2
1,169,647 + Dshi_1141 0.67 -1.9
1,169,657 + Dshi_1141 0.68 -1.3
1,169,843 + Dshi_1141 0.87 -2.7
1,169,909 + +0.3
1,170,002 + Dshi_1142 0.12 -1.2
1,170,118 + Dshi_1142 0.75 -0.1
1,170,673 + Dshi_1143 0.84 -1.7

Or see this region's nucleotide sequence