Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0862 and Dshi_0863 are separated by 32 nucleotides Dshi_0863 and Dshi_0864 are separated by 214 nucleotides Dshi_0864 and Dshi_0865 are separated by 1 nucleotides
Dshi_0862: Dshi_0862 - Extracellular ligand-binding receptor (RefSeq), at 877,656 to 878,795
_0862
Dshi_0863: Dshi_0863 - transcriptional regulator, AsnC family (RefSeq), at 878,828 to 879,064
_0863
Dshi_0864: Dshi_0864 - (2Fe-2S)-binding domain protein (RefSeq), at 879,279 to 879,737
_0864
Dshi_0865: Dshi_0865 - aldehyde oxidase and xanthine dehydrogenase molybdopterin binding (RefSeq), at 879,739 to 881,922
_0865
Position (kb) 879
880 Strain fitness (log2 ratio) -2
-1
0
1
2 at 878.294 kb on + strand, within Dshi_0862 at 878.317 kb on + strand, within Dshi_0862 at 878.372 kb on + strand, within Dshi_0862 at 878.401 kb on - strand, within Dshi_0862 at 878.464 kb on - strand, within Dshi_0862 at 878.482 kb on + strand, within Dshi_0862 at 878.553 kb on - strand, within Dshi_0862 at 878.621 kb on - strand at 878.681 kb on - strand, within Dshi_0862 at 878.726 kb on + strand at 878.734 kb on - strand at 878.738 kb on - strand at 878.739 kb on - strand at 878.779 kb on - strand at 878.826 kb on + strand at 878.842 kb on + strand at 878.850 kb on - strand at 878.906 kb on + strand, within Dshi_0863 at 878.911 kb on + strand, within Dshi_0863 at 878.911 kb on + strand, within Dshi_0863 at 878.995 kb on + strand, within Dshi_0863 at 879.003 kb on - strand, within Dshi_0863 at 879.049 kb on - strand at 879.059 kb on + strand at 879.067 kb on - strand at 879.067 kb on - strand at 879.081 kb on - strand at 879.112 kb on + strand at 879.192 kb on - strand at 879.221 kb on - strand at 879.231 kb on - strand at 879.245 kb on - strand at 879.294 kb on - strand at 879.369 kb on - strand, within Dshi_0864 at 879.502 kb on - strand, within Dshi_0864 at 879.528 kb on + strand, within Dshi_0864 at 879.571 kb on + strand, within Dshi_0864 at 879.678 kb on - strand, within Dshi_0864 at 879.752 kb on - strand at 879.758 kb on - strand at 879.856 kb on + strand at 879.864 kb on - strand at 879.878 kb on + strand at 879.886 kb on - strand at 879.900 kb on + strand at 879.949 kb on + strand at 879.972 kb on + strand, within Dshi_0865 at 880.012 kb on - strand, within Dshi_0865 at 880.047 kb on + strand, within Dshi_0865 at 880.055 kb on - strand, within Dshi_0865 at 880.085 kb on - strand, within Dshi_0865 at 880.097 kb on - strand, within Dshi_0865 at 880.202 kb on - strand, within Dshi_0865 at 880.221 kb on + strand, within Dshi_0865 at 880.265 kb on - strand, within Dshi_0865 at 880.404 kb on + strand, within Dshi_0865 at 880.404 kb on + strand, within Dshi_0865 at 880.462 kb on + strand, within Dshi_0865 at 880.488 kb on + strand, within Dshi_0865 at 880.630 kb on - strand, within Dshi_0865
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 878,294 + Dshi_0862 0.56 +0.3 878,317 + Dshi_0862 0.58 +0.0 878,372 + Dshi_0862 0.63 -0.2 878,401 - Dshi_0862 0.65 -0.3 878,464 - Dshi_0862 0.71 -0.2 878,482 + Dshi_0862 0.72 -1.8 878,553 - Dshi_0862 0.79 +0.2 878,621 - +0.6 878,681 - Dshi_0862 0.90 -2.5 878,726 + -1.4 878,734 - -0.8 878,738 - +0.3 878,739 - -0.5 878,779 - -0.0 878,826 + -1.1 878,842 + +0.2 878,850 - -1.6 878,906 + Dshi_0863 0.33 -1.8 878,911 + Dshi_0863 0.35 -1.7 878,911 + Dshi_0863 0.35 -1.0 878,995 + Dshi_0863 0.70 -0.8 879,003 - Dshi_0863 0.74 +1.7 879,049 - -2.1 879,059 + -0.7 879,067 - -0.3 879,067 - -0.4 879,081 - -1.2 879,112 + -0.8 879,192 - -1.1 879,221 - -2.0 879,231 - +2.3 879,245 - +0.4 879,294 - +0.6 879,369 - Dshi_0864 0.20 +0.1 879,502 - Dshi_0864 0.49 -0.4 879,528 + Dshi_0864 0.54 +0.1 879,571 + Dshi_0864 0.64 +0.9 879,678 - Dshi_0864 0.87 +0.5 879,752 - +0.7 879,758 - -0.1 879,856 + -0.9 879,864 - -0.4 879,878 + +0.4 879,886 - +0.2 879,900 + -0.3 879,949 + -0.3 879,972 + Dshi_0865 0.11 +0.6 880,012 - Dshi_0865 0.12 -2.2 880,047 + Dshi_0865 0.14 +0.3 880,055 - Dshi_0865 0.14 -1.2 880,085 - Dshi_0865 0.16 -2.2 880,097 - Dshi_0865 0.16 +0.0 880,202 - Dshi_0865 0.21 -0.5 880,221 + Dshi_0865 0.22 +0.2 880,265 - Dshi_0865 0.24 -1.4 880,404 + Dshi_0865 0.30 -0.1 880,404 + Dshi_0865 0.30 -2.2 880,462 + Dshi_0865 0.33 -1.2 880,488 + Dshi_0865 0.34 +0.3 880,630 - Dshi_0865 0.41 +0.5
Or see this region's nucleotide sequence