Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0808 and Dshi_0809 are separated by 490 nucleotides
Dshi_0808: Dshi_0808 - MltA-interacting MipA family protein (RefSeq), at 816,307 to 817,050
_0808
Dshi_0809: Dshi_0809 - GTP-binding protein LepA (RefSeq), at 817,541 to 819,340
_0809
Position (kb) 817
818
819
820 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 816.588 kb on + strand, within Dshi_0808 at 816.753 kb on + strand, within Dshi_0808 at 816.825 kb on - strand, within Dshi_0808 at 816.854 kb on - strand, within Dshi_0808 at 816.923 kb on + strand, within Dshi_0808 at 816.931 kb on - strand, within Dshi_0808 at 816.977 kb on + strand at 816.987 kb on - strand at 816.987 kb on - strand at 816.991 kb on - strand at 817.011 kb on + strand at 817.011 kb on + strand at 817.011 kb on + strand at 817.014 kb on - strand at 817.019 kb on - strand at 817.031 kb on - strand at 817.114 kb on + strand at 817.114 kb on - strand at 817.122 kb on - strand at 817.238 kb on - strand at 817.263 kb on + strand at 817.286 kb on + strand at 817.328 kb on - strand at 817.400 kb on - strand at 817.514 kb on + strand at 817.557 kb on - strand at 817.599 kb on + strand at 817.714 kb on + strand at 817.722 kb on - strand, within Dshi_0809 at 817.897 kb on + strand, within Dshi_0809 at 817.944 kb on + strand, within Dshi_0809 at 818.208 kb on - strand, within Dshi_0809 at 818.235 kb on - strand, within Dshi_0809 at 818.574 kb on + strand, within Dshi_0809 at 818.646 kb on - strand, within Dshi_0809 at 818.845 kb on + strand, within Dshi_0809 at 819.072 kb on + strand, within Dshi_0809 at 819.080 kb on - strand, within Dshi_0809 at 819.092 kb on + strand, within Dshi_0809 at 819.239 kb on + strand at 819.239 kb on + strand at 819.239 kb on + strand at 819.308 kb on + strand at 819.316 kb on - strand at 819.322 kb on + strand at 819.336 kb on + strand at 819.343 kb on - strand at 819.343 kb on - strand at 819.344 kb on - strand at 819.344 kb on - strand at 819.356 kb on - strand at 819.358 kb on + strand at 819.358 kb on + strand at 819.358 kb on + strand at 819.361 kb on - strand at 819.377 kb on - strand at 819.377 kb on - strand at 819.387 kb on + strand at 819.395 kb on - strand at 819.414 kb on - strand at 819.431 kb on - strand at 819.461 kb on - strand at 819.466 kb on - strand at 819.498 kb on + strand at 819.498 kb on + strand at 819.506 kb on - strand at 819.506 kb on - strand at 819.506 kb on - strand at 819.506 kb on - strand at 819.517 kb on + strand at 819.517 kb on + strand at 819.616 kb on - strand at 819.640 kb on + strand at 819.648 kb on - strand at 819.673 kb on - strand at 819.714 kb on + strand at 819.714 kb on + strand at 819.721 kb on + strand at 819.726 kb on - strand at 819.727 kb on + strand at 819.727 kb on + strand at 819.729 kb on - strand at 819.743 kb on - strand at 819.748 kb on - strand at 819.748 kb on - strand at 819.750 kb on + strand at 819.754 kb on - strand at 819.761 kb on + strand at 819.777 kb on + strand at 819.781 kb on + strand at 819.781 kb on + strand at 819.782 kb on + strand at 819.782 kb on + strand at 819.786 kb on + strand at 819.789 kb on + strand at 819.789 kb on + strand at 819.789 kb on + strand at 819.789 kb on + strand at 819.789 kb on + strand at 819.789 kb on - strand at 819.789 kb on - strand at 819.797 kb on - strand at 819.797 kb on - strand at 819.797 kb on - strand at 819.797 kb on - strand at 819.797 kb on - strand at 819.797 kb on - strand at 819.818 kb on + strand at 819.819 kb on - strand at 819.836 kb on + strand at 819.836 kb on - strand at 819.839 kb on + strand at 819.839 kb on + strand at 819.845 kb on + strand at 819.847 kb on - strand at 819.847 kb on - strand at 819.863 kb on - strand at 819.863 kb on - strand at 819.873 kb on + strand at 819.873 kb on + strand at 819.874 kb on + strand at 819.874 kb on + strand at 819.881 kb on - strand at 819.881 kb on - strand at 819.882 kb on - strand at 819.882 kb on - strand at 819.886 kb on - strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.895 kb on + strand at 819.896 kb on + strand at 819.900 kb on + strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.903 kb on - strand at 819.905 kb on + strand at 819.905 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.910 kb on + strand at 819.912 kb on + strand at 819.913 kb on - strand at 819.913 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.918 kb on - strand at 819.920 kb on - strand at 819.920 kb on - strand at 819.934 kb on - strand at 819.935 kb on + strand at 819.940 kb on + strand at 819.960 kb on + strand at 819.981 kb on + strand at 819.981 kb on + strand at 819.981 kb on + strand at 819.981 kb on + strand at 819.981 kb on + strand at 819.981 kb on + strand at 819.981 kb on + strand at 819.981 kb on + strand at 819.988 kb on - strand at 819.989 kb on - strand at 819.989 kb on - strand at 819.989 kb on - strand at 819.989 kb on - strand at 819.989 kb on - strand at 819.989 kb on - strand at 819.991 kb on + strand at 819.999 kb on - strand at 820.027 kb on - strand at 820.027 kb on - strand at 820.029 kb on - strand at 820.038 kb on + strand at 820.090 kb on - strand at 820.097 kb on + strand at 820.098 kb on + strand at 820.098 kb on + strand at 820.105 kb on - strand at 820.108 kb on + strand at 820.108 kb on + strand at 820.110 kb on + strand at 820.116 kb on - strand at 820.130 kb on - strand at 820.170 kb on + strand at 820.170 kb on - strand at 820.200 kb on - strand at 820.209 kb on + strand at 820.217 kb on - strand at 820.219 kb on + strand at 820.219 kb on - strand at 820.227 kb on - strand at 820.240 kb on + strand at 820.248 kb on - strand at 820.258 kb on - strand at 820.266 kb on + strand at 820.266 kb on + strand at 820.274 kb on - strand at 820.289 kb on - strand at 820.291 kb on + strand at 820.299 kb on - strand at 820.333 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 816,588 + Dshi_0808 0.38 +1.1 816,753 + Dshi_0808 0.60 -0.3 816,825 - Dshi_0808 0.70 -0.3 816,854 - Dshi_0808 0.74 -1.2 816,923 + Dshi_0808 0.83 -0.4 816,931 - Dshi_0808 0.84 -1.1 816,977 + -0.6 816,987 - -1.6 816,987 - +0.1 816,991 - -1.1 817,011 + +1.6 817,011 + -0.2 817,011 + -2.3 817,014 - -0.7 817,019 - +0.9 817,031 - +0.4 817,114 + -1.9 817,114 - +1.8 817,122 - -0.1 817,238 - +0.5 817,263 + +0.7 817,286 + -0.6 817,328 - -0.1 817,400 - +0.1 817,514 + +0.2 817,557 - +0.3 817,599 + -2.9 817,714 + -1.2 817,722 - Dshi_0809 0.10 +0.3 817,897 + Dshi_0809 0.20 -1.9 817,944 + Dshi_0809 0.22 -1.2 818,208 - Dshi_0809 0.37 -0.1 818,235 - Dshi_0809 0.39 -2.4 818,574 + Dshi_0809 0.57 +0.0 818,646 - Dshi_0809 0.61 -1.3 818,845 + Dshi_0809 0.72 -0.2 819,072 + Dshi_0809 0.85 -1.1 819,080 - Dshi_0809 0.85 -2.7 819,092 + Dshi_0809 0.86 +1.1 819,239 + -0.0 819,239 + +1.0 819,239 + +0.8 819,308 + -0.8 819,316 - -0.9 819,322 + +0.3 819,336 + -0.4 819,343 - -0.5 819,343 - -0.1 819,344 - +0.3 819,344 - -0.2 819,356 - +2.0 819,358 + -0.2 819,358 + -1.7 819,358 + -0.3 819,361 - -0.4 819,377 - +1.1 819,377 - -0.1 819,387 + +0.7 819,395 - +0.9 819,414 - +1.6 819,431 - -1.4 819,461 - -1.2 819,466 - -0.3 819,498 + +0.1 819,498 + -0.3 819,506 - +0.5 819,506 - +0.1 819,506 - -0.7 819,506 - +0.2 819,517 + -0.3 819,517 + -0.7 819,616 - -0.0 819,640 + +0.6 819,648 - -0.6 819,673 - +0.0 819,714 + -0.6 819,714 + -0.2 819,721 + -1.2 819,726 - +0.7 819,727 + -0.6 819,727 + -0.9 819,729 - -0.3 819,743 - -0.6 819,748 - -1.0 819,748 - -0.8 819,750 + -0.2 819,754 - -0.3 819,761 + -1.0 819,777 + +1.1 819,781 + +0.6 819,781 + -2.0 819,782 + -0.2 819,782 + +0.3 819,786 + +0.1 819,789 + +3.5 819,789 + +1.4 819,789 + -0.9 819,789 + -0.4 819,789 + -1.1 819,789 - +0.0 819,789 - +0.1 819,797 - +0.8 819,797 - +0.0 819,797 - -0.7 819,797 - -1.4 819,797 - +0.0 819,797 - -0.3 819,818 + -0.1 819,819 - +0.5 819,836 + -0.2 819,836 - +1.0 819,839 + -0.6 819,839 + +0.3 819,845 + +0.0 819,847 - -0.1 819,847 - +0.8 819,863 - -1.2 819,863 - -1.3 819,873 + +1.1 819,873 + +0.4 819,874 + +0.9 819,874 + -0.6 819,881 - +0.5 819,881 - -0.1 819,882 - -0.2 819,882 - +1.4 819,886 - +0.5 819,895 + +0.5 819,895 + +0.5 819,895 + -1.8 819,895 + -0.4 819,895 + +0.5 819,895 + +0.3 819,895 + +3.1 819,895 + -0.7 819,895 + -0.3 819,895 + -0.4 819,895 + -0.8 819,895 + +0.9 819,895 + +0.1 819,895 + +0.3 819,895 + +0.4 819,895 + +0.5 819,895 + +0.2 819,895 + -1.2 819,895 + +1.3 819,895 + -1.0 819,895 + -0.1 819,895 + -1.1 819,895 + -0.2 819,895 + +0.5 819,895 + -0.0 819,895 + +0.2 819,895 + +0.7 819,895 + -0.3 819,895 + +0.3 819,895 + +0.4 819,895 + -1.0 819,895 + -0.8 819,895 + -1.9 819,895 + +0.5 819,895 + +0.2 819,895 + -0.7 819,895 + +1.5 819,895 + -0.2 819,895 + -0.5 819,895 + +1.8 819,895 + -0.4 819,895 + -1.2 819,895 + +0.1 819,895 + -0.1 819,895 + +0.2 819,895 + -0.4 819,895 + -0.9 819,895 + -0.0 819,895 + +1.1 819,895 + +0.1 819,895 + -1.4 819,895 + +0.4 819,895 + -0.2 819,895 + -0.9 819,895 + -0.6 819,895 + -0.9 819,895 + +0.4 819,895 + -0.7 819,895 + -0.3 819,895 + -0.1 819,895 + +1.4 819,895 + -0.3 819,895 + -1.2 819,895 + +0.2 819,895 + -1.9 819,895 + -1.4 819,895 + +0.6 819,895 + -0.9 819,896 + -2.2 819,900 + +0.5 819,903 - -1.1 819,903 - -1.1 819,903 - -0.4 819,903 - -3.2 819,903 - +0.5 819,903 - -0.5 819,903 - +1.4 819,903 - -0.6 819,903 - -0.1 819,903 - +0.3 819,903 - +1.3 819,903 - -0.0 819,903 - +0.1 819,903 - +0.1 819,903 - +0.6 819,903 - +0.6 819,903 - +1.1 819,903 - -0.2 819,903 - -0.2 819,903 - -0.6 819,903 - -1.5 819,903 - -0.8 819,903 - +0.4 819,903 - -0.3 819,903 - +0.1 819,903 - +0.5 819,903 - -0.3 819,903 - -0.7 819,903 - +0.3 819,903 - -0.4 819,903 - +0.0 819,903 - +0.8 819,903 - +0.6 819,903 - -0.1 819,903 - +0.7 819,905 + -1.3 819,905 + -0.1 819,910 + -0.7 819,910 + +0.5 819,910 + +0.1 819,910 + +1.6 819,910 + +0.1 819,910 + -1.9 819,910 + -1.7 819,910 + +0.6 819,910 + -0.1 819,910 + +0.0 819,910 + +0.1 819,910 + +0.3 819,910 + +0.5 819,910 + +0.3 819,910 + -0.7 819,910 + +0.1 819,910 + +0.1 819,910 + -0.5 819,910 + -0.4 819,910 + -0.9 819,910 + +1.1 819,910 + +1.6 819,910 + -3.1 819,910 + -0.9 819,910 + -0.1 819,910 + -1.2 819,910 + -0.3 819,910 + +0.9 819,910 + -0.7 819,910 + +0.9 819,910 + -0.0 819,910 + +0.5 819,910 + -0.3 819,912 + -0.2 819,913 - +0.0 819,913 - +0.7 819,918 - +0.2 819,918 - +0.8 819,918 - -0.9 819,918 - -0.5 819,918 - -1.8 819,918 - +0.5 819,918 - +0.6 819,918 - +0.9 819,918 - +0.6 819,918 - -1.0 819,918 - +0.4 819,918 - -0.6 819,918 - -0.9 819,920 - -1.9 819,920 - -0.0 819,934 - -0.1 819,935 + +1.1 819,940 + -1.0 819,960 + +0.8 819,981 + -0.8 819,981 + +0.4 819,981 + -0.9 819,981 + +0.1 819,981 + +0.6 819,981 + +0.6 819,981 + +0.6 819,981 + -0.2 819,988 - -0.4 819,989 - -0.8 819,989 - -2.9 819,989 - -0.9 819,989 - +0.6 819,989 - -1.7 819,989 - -0.7 819,991 + -0.7 819,999 - +1.1 820,027 - +1.4 820,027 - +0.5 820,029 - -0.2 820,038 + +0.5 820,090 - +0.5 820,097 + -2.3 820,098 + -0.6 820,098 + +0.4 820,105 - +0.7 820,108 + -1.4 820,108 + -0.9 820,110 + -1.0 820,116 - +0.4 820,130 - -1.6 820,170 + -0.1 820,170 - +0.4 820,200 - -0.0 820,209 + +1.1 820,217 - +0.1 820,219 + -0.4 820,219 - +0.0 820,227 - -1.4 820,240 + +0.2 820,248 - +0.5 820,258 - -1.2 820,266 + -0.1 820,266 + +0.4 820,274 - -0.3 820,289 - +0.6 820,291 + -0.4 820,299 - -2.3 820,333 - +0.3
Or see this region's nucleotide sequence