Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0656

Experiment: Cytosine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0655 and Dshi_0656 are separated by 4 nucleotidesDshi_0656 and Dshi_0657 are separated by 1 nucleotides Dshi_0655: Dshi_0655 - extracellular solute-binding protein family 5 (RefSeq), at 656,989 to 658,890 _0655 Dshi_0656: Dshi_0656 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 658,895 to 659,992 _0656 Dshi_0657: Dshi_0657 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 659,994 to 661,172 _0657 Position (kb) 658 659 660Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 657.900 kb on + strand, within Dshi_0655at 657.900 kb on + strand, within Dshi_0655at 657.900 kb on + strand, within Dshi_0655at 657.921 kb on - strand, within Dshi_0655at 657.942 kb on - strand, within Dshi_0655at 657.979 kb on - strand, within Dshi_0655at 657.985 kb on + strand, within Dshi_0655at 657.985 kb on + strand, within Dshi_0655at 657.985 kb on + strand, within Dshi_0655at 657.986 kb on - strand, within Dshi_0655at 657.990 kb on + strand, within Dshi_0655at 657.990 kb on + strand, within Dshi_0655at 657.993 kb on - strand, within Dshi_0655at 657.998 kb on - strand, within Dshi_0655at 658.006 kb on - strand, within Dshi_0655at 658.007 kb on - strand, within Dshi_0655at 658.011 kb on - strand, within Dshi_0655at 658.047 kb on - strand, within Dshi_0655at 658.053 kb on - strand, within Dshi_0655at 658.053 kb on - strand, within Dshi_0655at 658.099 kb on + strand, within Dshi_0655at 658.118 kb on + strand, within Dshi_0655at 658.130 kb on + strand, within Dshi_0655at 658.138 kb on - strand, within Dshi_0655at 658.209 kb on - strand, within Dshi_0655at 658.234 kb on - strand, within Dshi_0655at 658.234 kb on - strand, within Dshi_0655at 658.474 kb on + strand, within Dshi_0655at 658.476 kb on + strand, within Dshi_0655at 658.551 kb on - strand, within Dshi_0655at 658.552 kb on - strand, within Dshi_0655at 658.598 kb on + strand, within Dshi_0655at 658.605 kb on - strand, within Dshi_0655at 658.647 kb on + strand, within Dshi_0655at 658.655 kb on - strand, within Dshi_0655at 658.681 kb on - strand, within Dshi_0655at 658.702 kb on + strandat 658.717 kb on - strandat 658.757 kb on - strandat 658.768 kb on - strandat 658.783 kb on - strandat 658.811 kb on + strandat 658.818 kb on - strandat 658.819 kb on - strandat 658.819 kb on - strandat 658.824 kb on - strandat 658.857 kb on + strandat 658.857 kb on + strandat 658.864 kb on + strandat 658.865 kb on - strandat 658.910 kb on - strandat 658.927 kb on + strandat 658.932 kb on + strandat 659.025 kb on - strand, within Dshi_0656at 659.087 kb on + strand, within Dshi_0656at 659.095 kb on - strand, within Dshi_0656at 659.123 kb on + strand, within Dshi_0656at 659.124 kb on + strand, within Dshi_0656at 659.132 kb on - strand, within Dshi_0656at 659.132 kb on - strand, within Dshi_0656at 659.254 kb on + strand, within Dshi_0656at 659.310 kb on + strand, within Dshi_0656at 659.310 kb on + strand, within Dshi_0656at 659.331 kb on + strand, within Dshi_0656at 659.343 kb on - strand, within Dshi_0656at 659.369 kb on + strand, within Dshi_0656at 659.400 kb on + strand, within Dshi_0656at 659.486 kb on + strand, within Dshi_0656at 659.593 kb on - strand, within Dshi_0656at 659.608 kb on - strand, within Dshi_0656at 659.623 kb on - strand, within Dshi_0656at 659.684 kb on + strand, within Dshi_0656at 659.711 kb on + strand, within Dshi_0656at 659.711 kb on + strand, within Dshi_0656at 659.778 kb on - strand, within Dshi_0656at 659.820 kb on + strand, within Dshi_0656at 659.820 kb on + strand, within Dshi_0656at 659.847 kb on - strand, within Dshi_0656at 659.944 kb on - strandat 659.949 kb on - strandat 660.010 kb on - strandat 660.011 kb on + strandat 660.014 kb on - strandat 660.316 kb on + strand, within Dshi_0657at 660.334 kb on + strand, within Dshi_0657at 660.342 kb on - strand, within Dshi_0657at 660.368 kb on + strand, within Dshi_0657at 660.416 kb on + strand, within Dshi_0657at 660.433 kb on - strand, within Dshi_0657at 660.633 kb on + strand, within Dshi_0657at 660.756 kb on - strand, within Dshi_0657at 660.772 kb on - strand, within Dshi_0657at 660.792 kb on + strand, within Dshi_0657at 660.792 kb on + strand, within Dshi_0657at 660.792 kb on + strand, within Dshi_0657at 660.810 kb on - strand, within Dshi_0657at 660.900 kb on + strand, within Dshi_0657

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
remove
657,900 + Dshi_0655 0.48 -0.4
657,900 + Dshi_0655 0.48 -0.2
657,900 + Dshi_0655 0.48 -1.9
657,921 - Dshi_0655 0.49 -0.3
657,942 - Dshi_0655 0.50 -1.6
657,979 - Dshi_0655 0.52 -1.1
657,985 + Dshi_0655 0.52 -1.2
657,985 + Dshi_0655 0.52 -0.4
657,985 + Dshi_0655 0.52 +0.5
657,986 - Dshi_0655 0.52 -2.1
657,990 + Dshi_0655 0.53 -0.0
657,990 + Dshi_0655 0.53 -1.4
657,993 - Dshi_0655 0.53 -2.9
657,998 - Dshi_0655 0.53 -2.7
658,006 - Dshi_0655 0.53 -1.3
658,007 - Dshi_0655 0.54 -1.1
658,011 - Dshi_0655 0.54 -1.0
658,047 - Dshi_0655 0.56 -0.8
658,053 - Dshi_0655 0.56 -1.9
658,053 - Dshi_0655 0.56 -2.5
658,099 + Dshi_0655 0.58 -1.3
658,118 + Dshi_0655 0.59 -0.1
658,130 + Dshi_0655 0.60 -1.6
658,138 - Dshi_0655 0.60 -1.3
658,209 - Dshi_0655 0.64 -1.4
658,234 - Dshi_0655 0.65 -2.0
658,234 - Dshi_0655 0.65 -1.6
658,474 + Dshi_0655 0.78 -0.1
658,476 + Dshi_0655 0.78 -1.1
658,551 - Dshi_0655 0.82 -2.3
658,552 - Dshi_0655 0.82 -2.8
658,598 + Dshi_0655 0.85 -0.6
658,605 - Dshi_0655 0.85 +0.0
658,647 + Dshi_0655 0.87 -2.3
658,655 - Dshi_0655 0.88 +0.2
658,681 - Dshi_0655 0.89 -1.3
658,702 + -0.7
658,717 - -4.1
658,757 - -3.0
658,768 - -2.7
658,783 - -1.9
658,811 + -2.1
658,818 - -1.4
658,819 - -2.3
658,819 - -0.1
658,824 - -1.3
658,857 + -3.0
658,857 + -0.8
658,864 + +0.4
658,865 - -2.8
658,910 - -1.9
658,927 + -0.9
658,932 + -0.9
659,025 - Dshi_0656 0.12 -1.8
659,087 + Dshi_0656 0.17 -1.4
659,095 - Dshi_0656 0.18 -0.8
659,123 + Dshi_0656 0.21 -1.7
659,124 + Dshi_0656 0.21 -0.8
659,132 - Dshi_0656 0.22 -3.5
659,132 - Dshi_0656 0.22 -1.6
659,254 + Dshi_0656 0.33 -0.9
659,310 + Dshi_0656 0.38 -0.3
659,310 + Dshi_0656 0.38 -0.6
659,331 + Dshi_0656 0.40 -2.5
659,343 - Dshi_0656 0.41 -1.3
659,369 + Dshi_0656 0.43 -2.3
659,400 + Dshi_0656 0.46 -1.7
659,486 + Dshi_0656 0.54 -2.7
659,593 - Dshi_0656 0.64 -0.1
659,608 - Dshi_0656 0.65 -2.5
659,623 - Dshi_0656 0.66 -2.1
659,684 + Dshi_0656 0.72 -2.3
659,711 + Dshi_0656 0.74 -1.1
659,711 + Dshi_0656 0.74 +0.3
659,778 - Dshi_0656 0.80 -2.1
659,820 + Dshi_0656 0.84 -0.8
659,820 + Dshi_0656 0.84 -1.8
659,847 - Dshi_0656 0.87 +0.2
659,944 - -2.6
659,949 - -0.4
660,010 - -1.2
660,011 + +0.4
660,014 - +0.6
660,316 + Dshi_0657 0.27 +0.0
660,334 + Dshi_0657 0.29 -1.6
660,342 - Dshi_0657 0.30 -3.6
660,368 + Dshi_0657 0.32 -2.9
660,416 + Dshi_0657 0.36 -1.4
660,433 - Dshi_0657 0.37 -2.1
660,633 + Dshi_0657 0.54 -0.7
660,756 - Dshi_0657 0.65 -3.5
660,772 - Dshi_0657 0.66 -1.7
660,792 + Dshi_0657 0.68 -1.9
660,792 + Dshi_0657 0.68 -1.1
660,792 + Dshi_0657 0.68 -2.9
660,810 - Dshi_0657 0.69 -1.6
660,900 + Dshi_0657 0.77 -1.4

Or see this region's nucleotide sequence