Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0434

Experiment: Cytosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0433 and Dshi_0434 are separated by 3 nucleotidesDshi_0434 and Dshi_0435 are separated by 253 nucleotides Dshi_0433: Dshi_0433 - ornithine carbamoyltransferase (RefSeq), at 424,920 to 425,921 _0433 Dshi_0434: Dshi_0434 - carbamate kinase (RefSeq), at 425,925 to 426,863 _0434 Dshi_0435: Dshi_0435 - ATP synthase F1, beta subunit (RefSeq), at 427,117 to 428,505 _0435 Position (kb) 425 426 427Strain fitness (log2 ratio) -3 -2 -1 0 1at 424.948 kb on + strandat 425.043 kb on - strand, within Dshi_0433at 425.043 kb on - strand, within Dshi_0433at 425.122 kb on + strand, within Dshi_0433at 425.122 kb on + strand, within Dshi_0433at 425.122 kb on + strand, within Dshi_0433at 425.122 kb on + strand, within Dshi_0433at 425.130 kb on - strand, within Dshi_0433at 425.130 kb on - strand, within Dshi_0433at 425.139 kb on + strand, within Dshi_0433at 425.157 kb on - strand, within Dshi_0433at 425.188 kb on - strand, within Dshi_0433at 425.216 kb on - strand, within Dshi_0433at 425.275 kb on - strand, within Dshi_0433at 425.307 kb on - strand, within Dshi_0433at 425.317 kb on + strand, within Dshi_0433at 425.325 kb on - strand, within Dshi_0433at 425.336 kb on - strand, within Dshi_0433at 425.391 kb on + strand, within Dshi_0433at 425.415 kb on + strand, within Dshi_0433at 425.422 kb on + strand, within Dshi_0433at 425.428 kb on - strand, within Dshi_0433at 425.435 kb on - strand, within Dshi_0433at 425.450 kb on + strand, within Dshi_0433at 425.459 kb on + strand, within Dshi_0433at 425.467 kb on + strand, within Dshi_0433at 425.492 kb on + strandat 425.497 kb on + strand, within Dshi_0433at 425.499 kb on - strand, within Dshi_0433at 425.505 kb on - strand, within Dshi_0433at 425.526 kb on - strand, within Dshi_0433at 425.536 kb on - strand, within Dshi_0433at 425.548 kb on - strand, within Dshi_0433at 425.548 kb on - strand, within Dshi_0433at 425.548 kb on - strand, within Dshi_0433at 425.564 kb on + strand, within Dshi_0433at 425.574 kb on + strand, within Dshi_0433at 425.630 kb on + strand, within Dshi_0433at 425.682 kb on - strand, within Dshi_0433at 425.684 kb on + strand, within Dshi_0433at 425.684 kb on + strand, within Dshi_0433at 425.784 kb on + strand, within Dshi_0433at 425.803 kb on - strand, within Dshi_0433at 425.817 kb on - strand, within Dshi_0433at 425.898 kb on - strandat 425.923 kb on - strandat 425.928 kb on - strandat 425.928 kb on - strandat 425.968 kb on - strandat 426.029 kb on + strand, within Dshi_0434at 426.037 kb on - strand, within Dshi_0434at 426.037 kb on - strand, within Dshi_0434at 426.063 kb on - strand, within Dshi_0434at 426.086 kb on + strand, within Dshi_0434at 426.114 kb on + strand, within Dshi_0434at 426.213 kb on + strand, within Dshi_0434at 426.213 kb on + strand, within Dshi_0434at 426.221 kb on - strand, within Dshi_0434at 426.242 kb on + strand, within Dshi_0434at 426.350 kb on - strand, within Dshi_0434at 426.363 kb on + strand, within Dshi_0434at 426.456 kb on - strand, within Dshi_0434at 426.456 kb on - strand, within Dshi_0434at 426.856 kb on - strandat 426.882 kb on + strandat 426.882 kb on + strandat 426.974 kb on + strandat 426.998 kb on - strandat 427.021 kb on + strandat 427.107 kb on + strandat 427.113 kb on + strandat 427.135 kb on + strandat 427.155 kb on - strandat 427.289 kb on + strand, within Dshi_0435at 427.415 kb on - strand, within Dshi_0435at 427.498 kb on + strand, within Dshi_0435at 427.561 kb on + strand, within Dshi_0435at 427.564 kb on - strand, within Dshi_0435at 427.582 kb on - strandat 427.640 kb on + strand, within Dshi_0435at 427.650 kb on + strand, within Dshi_0435at 427.708 kb on - strand, within Dshi_0435at 427.709 kb on + strand, within Dshi_0435at 427.738 kb on - strand, within Dshi_0435at 427.823 kb on + strand, within Dshi_0435at 427.842 kb on - strand, within Dshi_0435

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
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424,948 + +0.3
425,043 - Dshi_0433 0.12 -0.1
425,043 - Dshi_0433 0.12 +0.4
425,122 + Dshi_0433 0.20 -0.3
425,122 + Dshi_0433 0.20 -1.8
425,122 + Dshi_0433 0.20 -1.2
425,122 + Dshi_0433 0.20 -1.4
425,130 - Dshi_0433 0.21 -0.3
425,130 - Dshi_0433 0.21 -1.4
425,139 + Dshi_0433 0.22 -1.9
425,157 - Dshi_0433 0.24 +0.3
425,188 - Dshi_0433 0.27 +0.4
425,216 - Dshi_0433 0.30 -0.5
425,275 - Dshi_0433 0.35 +0.1
425,307 - Dshi_0433 0.39 -0.5
425,317 + Dshi_0433 0.40 -0.5
425,325 - Dshi_0433 0.40 -0.4
425,336 - Dshi_0433 0.42 +0.4
425,391 + Dshi_0433 0.47 -2.5
425,415 + Dshi_0433 0.49 -0.4
425,422 + Dshi_0433 0.50 +1.0
425,428 - Dshi_0433 0.51 -0.2
425,435 - Dshi_0433 0.51 +0.4
425,450 + Dshi_0433 0.53 +0.4
425,459 + Dshi_0433 0.54 -0.1
425,467 + Dshi_0433 0.55 -3.1
425,492 + -1.8
425,497 + Dshi_0433 0.58 -0.7
425,499 - Dshi_0433 0.58 +1.2
425,505 - Dshi_0433 0.58 -0.5
425,526 - Dshi_0433 0.60 -0.4
425,536 - Dshi_0433 0.61 +0.4
425,548 - Dshi_0433 0.63 -0.1
425,548 - Dshi_0433 0.63 -0.3
425,548 - Dshi_0433 0.63 +0.5
425,564 + Dshi_0433 0.64 +0.0
425,574 + Dshi_0433 0.65 -0.6
425,630 + Dshi_0433 0.71 -1.0
425,682 - Dshi_0433 0.76 +0.3
425,684 + Dshi_0433 0.76 -0.0
425,684 + Dshi_0433 0.76 -2.1
425,784 + Dshi_0433 0.86 -3.7
425,803 - Dshi_0433 0.88 -0.2
425,817 - Dshi_0433 0.90 -0.4
425,898 - +1.5
425,923 - +0.7
425,928 - +0.1
425,928 - +0.8
425,968 - +0.2
426,029 + Dshi_0434 0.11 +1.0
426,037 - Dshi_0434 0.12 -0.5
426,037 - Dshi_0434 0.12 -0.6
426,063 - Dshi_0434 0.15 -2.3
426,086 + Dshi_0434 0.17 -0.6
426,114 + Dshi_0434 0.20 -2.3
426,213 + Dshi_0434 0.31 -2.8
426,213 + Dshi_0434 0.31 +0.8
426,221 - Dshi_0434 0.32 -2.1
426,242 + Dshi_0434 0.34 -0.5
426,350 - Dshi_0434 0.45 -1.6
426,363 + Dshi_0434 0.47 -1.1
426,456 - Dshi_0434 0.57 +1.7
426,456 - Dshi_0434 0.57 -0.3
426,856 - +0.1
426,882 + -0.3
426,882 + -0.8
426,974 + +0.3
426,998 - +0.3
427,021 + +0.3
427,107 + -1.2
427,113 + +0.5
427,135 + +0.2
427,155 - -1.6
427,289 + Dshi_0435 0.12 -0.4
427,415 - Dshi_0435 0.21 +0.3
427,498 + Dshi_0435 0.27 -1.0
427,561 + Dshi_0435 0.32 -0.4
427,564 - Dshi_0435 0.32 +1.0
427,582 - +1.2
427,640 + Dshi_0435 0.38 -0.5
427,650 + Dshi_0435 0.38 +0.0
427,708 - Dshi_0435 0.43 -0.6
427,709 + Dshi_0435 0.43 +0.2
427,738 - Dshi_0435 0.45 +0.8
427,823 + Dshi_0435 0.51 -1.4
427,842 - Dshi_0435 0.52 -0.1

Or see this region's nucleotide sequence