Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0161 and Dshi_0162 are separated by 15 nucleotides Dshi_0162 and Dshi_0163 are separated by 432 nucleotides Dshi_0163 and Dshi_0164 are separated by 219 nucleotides
Dshi_0161: Dshi_0161 - cobalt transporter, subunit CbtA (RefSeq), at 163,128 to 163,817
_0161
Dshi_0162: Dshi_0162 - hypothetical protein (RefSeq), at 163,833 to 164,030
_0162
Dshi_0163: Dshi_0163 - chromosome segregation protein SMC (RefSeq), at 164,463 to 167,915
_0163
Dshi_0164: Dshi_0164 - lytic murein transglycosylase (RefSeq), at 168,135 to 169,304
_0164
Position (kb) 164
165
166
167
168 Strain fitness (log2 ratio) -2
-1
0
1 at 163.491 kb on - strand, within Dshi_0161 at 164.204 kb on - strand at 164.233 kb on + strand at 164.244 kb on + strand at 164.244 kb on + strand at 164.282 kb on + strand at 164.299 kb on - strand at 164.299 kb on - strand at 164.419 kb on + strand at 164.434 kb on - strand at 164.483 kb on + strand at 164.580 kb on - strand at 164.742 kb on - strand at 164.762 kb on + strand at 165.001 kb on - strand, within Dshi_0163 at 165.041 kb on + strand, within Dshi_0163 at 165.095 kb on + strand, within Dshi_0163 at 165.289 kb on + strand, within Dshi_0163 at 165.485 kb on - strand, within Dshi_0163 at 165.764 kb on - strand, within Dshi_0163 at 166.136 kb on - strand, within Dshi_0163 at 166.234 kb on - strand, within Dshi_0163 at 166.531 kb on - strand, within Dshi_0163 at 166.583 kb on + strand, within Dshi_0163 at 167.027 kb on - strand, within Dshi_0163 at 167.029 kb on - strand, within Dshi_0163 at 167.037 kb on - strand, within Dshi_0163 at 167.108 kb on + strand, within Dshi_0163 at 167.146 kb on + strand, within Dshi_0163 at 167.202 kb on + strand, within Dshi_0163 at 167.519 kb on - strand, within Dshi_0163 at 167.654 kb on - strand at 167.896 kb on - strand at 168.059 kb on - strand at 168.117 kb on - strand at 168.121 kb on - strand at 168.141 kb on - strand at 168.141 kb on - strand at 168.144 kb on + strand at 168.254 kb on + strand, within Dshi_0164 at 168.306 kb on + strand, within Dshi_0164 at 168.317 kb on + strand, within Dshi_0164 at 168.325 kb on - strand, within Dshi_0164 at 168.469 kb on - strand, within Dshi_0164 at 168.521 kb on + strand, within Dshi_0164 at 168.527 kb on + strand, within Dshi_0164 at 168.558 kb on + strand, within Dshi_0164 at 168.668 kb on - strand, within Dshi_0164 at 168.730 kb on + strand, within Dshi_0164 at 168.790 kb on + strand, within Dshi_0164 at 168.883 kb on + strand, within Dshi_0164 at 168.883 kb on + strand, within Dshi_0164
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 163,491 - Dshi_0161 0.53 -0.0 164,204 - -0.0 164,233 + -0.2 164,244 + -0.3 164,244 + -0.3 164,282 + -0.3 164,299 - -0.8 164,299 - -0.8 164,419 + -0.9 164,434 - -0.5 164,483 + -1.6 164,580 - -0.1 164,742 - -0.4 164,762 + -2.5 165,001 - Dshi_0163 0.16 +0.0 165,041 + Dshi_0163 0.17 -2.5 165,095 + Dshi_0163 0.18 -0.4 165,289 + Dshi_0163 0.24 -0.6 165,485 - Dshi_0163 0.30 -0.5 165,764 - Dshi_0163 0.38 -0.3 166,136 - Dshi_0163 0.48 -0.0 166,234 - Dshi_0163 0.51 +0.5 166,531 - Dshi_0163 0.60 -1.1 166,583 + Dshi_0163 0.61 -1.4 167,027 - Dshi_0163 0.74 -0.6 167,029 - Dshi_0163 0.74 -0.2 167,037 - Dshi_0163 0.75 -1.1 167,108 + Dshi_0163 0.77 -1.4 167,146 + Dshi_0163 0.78 -0.7 167,202 + Dshi_0163 0.79 -1.4 167,519 - Dshi_0163 0.89 -1.5 167,654 - -2.1 167,896 - -1.1 168,059 - -0.3 168,117 - +0.8 168,121 - +0.3 168,141 - +1.2 168,141 - +0.0 168,144 + -1.4 168,254 + Dshi_0164 0.10 +0.4 168,306 + Dshi_0164 0.15 -0.2 168,317 + Dshi_0164 0.16 +0.5 168,325 - Dshi_0164 0.16 -0.0 168,469 - Dshi_0164 0.29 -0.7 168,521 + Dshi_0164 0.33 +0.5 168,527 + Dshi_0164 0.34 -0.1 168,558 + Dshi_0164 0.36 -0.4 168,668 - Dshi_0164 0.46 +0.8 168,730 + Dshi_0164 0.51 +0.5 168,790 + Dshi_0164 0.56 +0.0 168,883 + Dshi_0164 0.64 +0.2 168,883 + Dshi_0164 0.64 -2.4
Or see this region's nucleotide sequence