Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0136 and Dshi_0137 overlap by 4 nucleotides Dshi_0137 and Dshi_0138 are separated by 22 nucleotides Dshi_0138 and Dshi_0139 overlap by 4 nucleotides
Dshi_0136: Dshi_0136 - glycerophosphoryl diester phosphodiesterase (RefSeq), at 134,622 to 135,395
_0136
Dshi_0137: Dshi_0137 - Endoribonuclease L-PSP (RefSeq), at 135,392 to 135,859
_0137
Dshi_0138: Dshi_0138 - type I secretion membrane fusion protein, HlyD family (RefSeq), at 135,882 to 137,189
_0138
Dshi_0139: Dshi_0139 - type I secretion system ATPase (RefSeq), at 137,186 to 138,925
_0139
Position (kb) 135
136
137
138 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 134.922 kb on - strand, within Dshi_0136 at 134.991 kb on - strand, within Dshi_0136 at 135.012 kb on - strand, within Dshi_0136 at 135.098 kb on - strand, within Dshi_0136 at 135.227 kb on + strand, within Dshi_0136 at 135.381 kb on - strand at 135.584 kb on - strand, within Dshi_0137 at 135.698 kb on - strand, within Dshi_0137 at 135.739 kb on + strand, within Dshi_0137 at 135.814 kb on + strand at 135.820 kb on + strand at 135.833 kb on - strand at 135.890 kb on + strand at 135.993 kb on - strand at 136.012 kb on - strand at 136.058 kb on - strand, within Dshi_0138 at 136.225 kb on + strand, within Dshi_0138 at 136.251 kb on - strand, within Dshi_0138 at 136.251 kb on - strand, within Dshi_0138 at 136.347 kb on - strand, within Dshi_0138 at 136.492 kb on + strand, within Dshi_0138 at 136.527 kb on - strand, within Dshi_0138 at 136.566 kb on + strand, within Dshi_0138 at 136.585 kb on - strand, within Dshi_0138 at 136.724 kb on + strand, within Dshi_0138 at 136.741 kb on + strand, within Dshi_0138 at 136.781 kb on + strand, within Dshi_0138 at 136.781 kb on + strand, within Dshi_0138 at 136.980 kb on - strand, within Dshi_0138 at 137.258 kb on - strand at 137.479 kb on - strand, within Dshi_0139 at 137.496 kb on - strand, within Dshi_0139 at 137.607 kb on + strand, within Dshi_0139 at 137.644 kb on - strand, within Dshi_0139 at 137.934 kb on - strand, within Dshi_0139 at 137.963 kb on - strand, within Dshi_0139 at 138.059 kb on + strand, within Dshi_0139 at 138.060 kb on - strand, within Dshi_0139
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 134,922 - Dshi_0136 0.39 -2.1 134,991 - Dshi_0136 0.48 -0.3 135,012 - Dshi_0136 0.50 +0.5 135,098 - Dshi_0136 0.61 +0.1 135,227 + Dshi_0136 0.78 +0.3 135,381 - -0.4 135,584 - Dshi_0137 0.41 -0.4 135,698 - Dshi_0137 0.65 -1.1 135,739 + Dshi_0137 0.74 -0.2 135,814 + +0.8 135,820 + -0.1 135,833 - -0.6 135,890 + +1.2 135,993 - -0.7 136,012 - -0.4 136,058 - Dshi_0138 0.13 +0.6 136,225 + Dshi_0138 0.26 +0.8 136,251 - Dshi_0138 0.28 +0.5 136,251 - Dshi_0138 0.28 -0.4 136,347 - Dshi_0138 0.36 +0.9 136,492 + Dshi_0138 0.47 -0.5 136,527 - Dshi_0138 0.49 -2.1 136,566 + Dshi_0138 0.52 +0.4 136,585 - Dshi_0138 0.54 -4.0 136,724 + Dshi_0138 0.64 -1.0 136,741 + Dshi_0138 0.66 +0.8 136,781 + Dshi_0138 0.69 +1.1 136,781 + Dshi_0138 0.69 +0.2 136,980 - Dshi_0138 0.84 +0.7 137,258 - +0.5 137,479 - Dshi_0139 0.17 -0.2 137,496 - Dshi_0139 0.18 -1.8 137,607 + Dshi_0139 0.24 +0.5 137,644 - Dshi_0139 0.26 +1.2 137,934 - Dshi_0139 0.43 -2.6 137,963 - Dshi_0139 0.45 -0.6 138,059 + Dshi_0139 0.50 -0.8 138,060 - Dshi_0139 0.50 -2.4
Or see this region's nucleotide sequence