Experiment: Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05% without Tungstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0724 and DVU0725 are separated by 393 nucleotides DVU0725 and tgt are separated by 467 nucleotides
DVU0724: DVU0724 - sodium/alanine symporter family protein (TIGR), at 806,523 to 807,929
DVU0724
DVU0725: DVU0725 - conserved hypothetical protein (TIGR), at 808,323 to 810,470
DVU0725
DVU0726: tgt - queuine tRNA-ribosyltransferase (TIGR), at 810,938 to 812,065
tgt
Position (kb) 808
809
810
811 Strain fitness (log2 ratio) -2
-1
0
1
2 at 807.357 kb on + strand, within DVU0724 at 807.421 kb on + strand, within DVU0724 at 807.421 kb on + strand, within DVU0724 at 807.429 kb on - strand, within DVU0724 at 807.429 kb on - strand, within DVU0724 at 807.439 kb on - strand, within DVU0724 at 807.484 kb on - strand, within DVU0724 at 807.484 kb on - strand, within DVU0724 at 807.484 kb on - strand, within DVU0724 at 807.515 kb on + strand, within DVU0724 at 807.515 kb on + strand, within DVU0724 at 807.670 kb on + strand, within DVU0724 at 807.678 kb on - strand, within DVU0724 at 807.678 kb on - strand, within DVU0724 at 807.721 kb on + strand, within DVU0724 at 807.726 kb on - strand, within DVU0724 at 807.789 kb on + strand at 807.799 kb on + strand at 807.822 kb on - strand at 807.843 kb on + strand at 807.864 kb on - strand at 807.914 kb on + strand at 807.925 kb on + strand at 807.995 kb on + strand at 808.003 kb on - strand at 808.151 kb on + strand at 808.153 kb on + strand at 808.294 kb on - strand at 808.367 kb on - strand at 808.404 kb on - strand at 808.420 kb on - strand at 808.497 kb on + strand at 808.505 kb on - strand at 808.517 kb on + strand at 808.525 kb on - strand at 808.560 kb on + strand, within DVU0725 at 808.565 kb on + strand, within DVU0725 at 808.664 kb on - strand, within DVU0725 at 808.697 kb on - strand, within DVU0725 at 808.746 kb on - strand, within DVU0725 at 808.829 kb on + strand, within DVU0725 at 808.889 kb on + strand, within DVU0725 at 808.899 kb on - strand, within DVU0725 at 808.919 kb on + strand, within DVU0725 at 808.962 kb on + strand, within DVU0725 at 808.971 kb on - strand, within DVU0725 at 808.980 kb on + strand, within DVU0725 at 809.054 kb on + strand, within DVU0725 at 809.264 kb on - strand, within DVU0725 at 809.356 kb on - strand, within DVU0725 at 809.507 kb on + strand, within DVU0725 at 809.507 kb on + strand, within DVU0725 at 809.515 kb on - strand, within DVU0725 at 809.515 kb on - strand, within DVU0725 at 809.523 kb on + strand, within DVU0725 at 809.536 kb on + strand, within DVU0725 at 809.583 kb on + strand, within DVU0725 at 809.694 kb on + strand, within DVU0725 at 809.696 kb on + strand, within DVU0725 at 809.764 kb on - strand, within DVU0725 at 809.791 kb on - strand, within DVU0725 at 809.947 kb on + strand, within DVU0725 at 809.984 kb on - strand, within DVU0725 at 809.984 kb on - strand, within DVU0725 at 810.009 kb on - strand, within DVU0725 at 810.009 kb on - strand, within DVU0725 at 810.044 kb on + strand, within DVU0725 at 810.079 kb on - strand, within DVU0725 at 810.097 kb on + strand, within DVU0725 at 810.107 kb on + strand, within DVU0725 at 810.160 kb on + strand, within DVU0725 at 810.191 kb on + strand, within DVU0725 at 810.196 kb on + strand, within DVU0725 at 810.235 kb on + strand, within DVU0725 at 810.261 kb on + strand at 810.321 kb on + strand at 810.408 kb on + strand at 810.544 kb on + strand at 810.545 kb on + strand at 810.758 kb on + strand at 810.787 kb on + strand at 810.893 kb on + strand at 810.941 kb on + strand at 811.192 kb on + strand, within tgt at 811.218 kb on + strand, within tgt at 811.225 kb on - strand, within tgt at 811.301 kb on + strand, within tgt
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05% without Tungstate remove 807,357 + DVU0724 0.59 -0.6 807,421 + DVU0724 0.64 -0.6 807,421 + DVU0724 0.64 -0.3 807,429 - DVU0724 0.64 -0.3 807,429 - DVU0724 0.64 -0.3 807,439 - DVU0724 0.65 -0.6 807,484 - DVU0724 0.68 -1.8 807,484 - DVU0724 0.68 -0.1 807,484 - DVU0724 0.68 +1.7 807,515 + DVU0724 0.71 +1.0 807,515 + DVU0724 0.71 +0.5 807,670 + DVU0724 0.82 -0.9 807,678 - DVU0724 0.82 +0.4 807,678 - DVU0724 0.82 -0.4 807,721 + DVU0724 0.85 +0.3 807,726 - DVU0724 0.86 -0.3 807,789 + -0.6 807,799 + -0.7 807,822 - +0.3 807,843 + -2.3 807,864 - -1.7 807,914 + -0.4 807,925 + -2.3 807,995 + +0.0 808,003 - +0.6 808,151 + +0.2 808,153 + -1.0 808,294 - -1.4 808,367 - -0.6 808,404 - +0.1 808,420 - -1.1 808,497 + -0.0 808,505 - +0.0 808,517 + +0.1 808,525 - +1.0 808,560 + DVU0725 0.11 +0.1 808,565 + DVU0725 0.11 +0.2 808,664 - DVU0725 0.16 -0.2 808,697 - DVU0725 0.17 +1.0 808,746 - DVU0725 0.20 -0.7 808,829 + DVU0725 0.24 -0.2 808,889 + DVU0725 0.26 +0.1 808,899 - DVU0725 0.27 -0.1 808,919 + DVU0725 0.28 +0.0 808,962 + DVU0725 0.30 -0.3 808,971 - DVU0725 0.30 -0.1 808,980 + DVU0725 0.31 +0.1 809,054 + DVU0725 0.34 +1.0 809,264 - DVU0725 0.44 -0.4 809,356 - DVU0725 0.48 -0.1 809,507 + DVU0725 0.55 +2.6 809,507 + DVU0725 0.55 +0.5 809,515 - DVU0725 0.55 +0.1 809,515 - DVU0725 0.55 -0.3 809,523 + DVU0725 0.56 +0.2 809,536 + DVU0725 0.56 -1.3 809,583 + DVU0725 0.59 -1.4 809,694 + DVU0725 0.64 -0.7 809,696 + DVU0725 0.64 -0.1 809,764 - DVU0725 0.67 +0.5 809,791 - DVU0725 0.68 -0.6 809,947 + DVU0725 0.76 -1.5 809,984 - DVU0725 0.77 -0.1 809,984 - DVU0725 0.77 +0.7 810,009 - DVU0725 0.78 -0.0 810,009 - DVU0725 0.78 -0.4 810,044 + DVU0725 0.80 -0.1 810,079 - DVU0725 0.82 -1.3 810,097 + DVU0725 0.83 -0.8 810,107 + DVU0725 0.83 +0.5 810,160 + DVU0725 0.86 -1.5 810,191 + DVU0725 0.87 +0.1 810,196 + DVU0725 0.87 +0.4 810,235 + DVU0725 0.89 -1.0 810,261 + +0.0 810,321 + -0.3 810,408 + +2.0 810,544 + -0.2 810,545 + +0.2 810,758 + +0.1 810,787 + -0.6 810,893 + -0.5 810,941 + -0.9 811,192 + tgt DVU0726 0.23 -2.0 811,218 + tgt DVU0726 0.25 -1.4 811,225 - tgt DVU0726 0.25 -0.9 811,301 + tgt DVU0726 0.32 -1.8
Or see this region's nucleotide sequence