Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_791

Experiment: Hydroxylamine 0.5 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_790 and Pf6N2E2_791 are separated by 50 nucleotidesPf6N2E2_791 and Pf6N2E2_792 are separated by 29 nucleotides Pf6N2E2_790 - hypothetical protein, at 912,130 to 914,553 _790 Pf6N2E2_791 - hypothetical protein, at 914,604 to 916,886 _791 Pf6N2E2_792 - hypothetical protein, at 916,916 to 919,825 _792 Position (kb) 914 915 916 917Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 913.626 kb on - strand, within Pf6N2E2_790at 913.729 kb on + strand, within Pf6N2E2_790at 913.729 kb on + strand, within Pf6N2E2_790at 913.834 kb on + strand, within Pf6N2E2_790at 913.834 kb on + strand, within Pf6N2E2_790at 913.834 kb on + strand, within Pf6N2E2_790at 913.834 kb on + strand, within Pf6N2E2_790at 913.834 kb on + strand, within Pf6N2E2_790at 913.834 kb on + strand, within Pf6N2E2_790at 913.835 kb on - strand, within Pf6N2E2_790at 913.835 kb on - strand, within Pf6N2E2_790at 913.836 kb on + strand, within Pf6N2E2_790at 913.836 kb on + strand, within Pf6N2E2_790at 913.836 kb on + strand, within Pf6N2E2_790at 913.836 kb on + strand, within Pf6N2E2_790at 913.836 kb on + strand, within Pf6N2E2_790at 914.015 kb on - strand, within Pf6N2E2_790at 914.116 kb on + strand, within Pf6N2E2_790at 914.116 kb on + strand, within Pf6N2E2_790at 914.116 kb on + strand, within Pf6N2E2_790at 914.116 kb on + strand, within Pf6N2E2_790at 914.180 kb on - strand, within Pf6N2E2_790at 914.182 kb on - strand, within Pf6N2E2_790at 914.548 kb on + strandat 914.549 kb on - strandat 914.560 kb on + strandat 914.632 kb on + strandat 914.749 kb on + strandat 914.859 kb on + strand, within Pf6N2E2_791at 914.859 kb on + strandat 914.859 kb on + strand, within Pf6N2E2_791at 914.860 kb on - strand, within Pf6N2E2_791at 914.860 kb on - strand, within Pf6N2E2_791at 914.860 kb on - strand, within Pf6N2E2_791at 914.860 kb on - strand, within Pf6N2E2_791at 914.863 kb on + strand, within Pf6N2E2_791at 914.864 kb on - strand, within Pf6N2E2_791at 914.864 kb on - strand, within Pf6N2E2_791at 914.972 kb on + strand, within Pf6N2E2_791at 914.972 kb on + strand, within Pf6N2E2_791at 914.973 kb on - strand, within Pf6N2E2_791at 914.973 kb on - strand, within Pf6N2E2_791at 914.979 kb on + strand, within Pf6N2E2_791at 914.981 kb on + strand, within Pf6N2E2_791at 914.981 kb on + strand, within Pf6N2E2_791at 914.981 kb on + strand, within Pf6N2E2_791at 914.982 kb on - strand, within Pf6N2E2_791at 914.982 kb on - strand, within Pf6N2E2_791at 915.216 kb on - strand, within Pf6N2E2_791at 915.333 kb on + strand, within Pf6N2E2_791at 915.363 kb on + strand, within Pf6N2E2_791at 915.363 kb on + strand, within Pf6N2E2_791at 915.364 kb on - strand, within Pf6N2E2_791at 915.481 kb on + strand, within Pf6N2E2_791at 915.482 kb on - strand, within Pf6N2E2_791at 915.515 kb on + strand, within Pf6N2E2_791at 915.515 kb on + strand, within Pf6N2E2_791at 915.528 kb on + strand, within Pf6N2E2_791at 915.529 kb on - strand, within Pf6N2E2_791at 915.530 kb on + strand, within Pf6N2E2_791at 915.530 kb on + strand, within Pf6N2E2_791at 915.543 kb on + strand, within Pf6N2E2_791at 915.704 kb on + strand, within Pf6N2E2_791at 915.704 kb on + strand, within Pf6N2E2_791at 915.704 kb on + strand, within Pf6N2E2_791at 915.705 kb on - strand, within Pf6N2E2_791at 915.787 kb on + strand, within Pf6N2E2_791at 915.787 kb on + strand, within Pf6N2E2_791at 915.787 kb on + strand, within Pf6N2E2_791at 915.788 kb on - strand, within Pf6N2E2_791at 915.822 kb on + strand, within Pf6N2E2_791at 915.822 kb on + strand, within Pf6N2E2_791at 915.822 kb on + strand, within Pf6N2E2_791at 915.822 kb on + strand, within Pf6N2E2_791at 915.822 kb on + strand, within Pf6N2E2_791at 915.822 kb on + strand, within Pf6N2E2_791at 915.822 kb on + strand, within Pf6N2E2_791at 915.822 kb on + strand, within Pf6N2E2_791at 915.822 kb on + strand, within Pf6N2E2_791at 915.822 kb on + strand, within Pf6N2E2_791at 915.823 kb on - strand, within Pf6N2E2_791at 915.823 kb on - strand, within Pf6N2E2_791at 915.823 kb on - strand, within Pf6N2E2_791at 915.823 kb on - strand, within Pf6N2E2_791at 915.823 kb on - strand, within Pf6N2E2_791at 915.824 kb on + strand, within Pf6N2E2_791at 915.967 kb on + strand, within Pf6N2E2_791at 915.967 kb on + strand, within Pf6N2E2_791at 915.967 kb on + strand, within Pf6N2E2_791at 915.967 kb on + strand, within Pf6N2E2_791at 915.968 kb on - strand, within Pf6N2E2_791at 915.968 kb on - strand, within Pf6N2E2_791at 915.968 kb on - strand, within Pf6N2E2_791at 915.968 kb on - strand, within Pf6N2E2_791at 916.023 kb on + strand, within Pf6N2E2_791at 916.023 kb on + strand, within Pf6N2E2_791at 916.023 kb on + strand, within Pf6N2E2_791at 916.023 kb on + strand, within Pf6N2E2_791at 916.023 kb on + strand, within Pf6N2E2_791at 916.024 kb on - strand, within Pf6N2E2_791at 916.153 kb on + strand, within Pf6N2E2_791at 916.153 kb on + strand, within Pf6N2E2_791at 916.153 kb on + strand, within Pf6N2E2_791at 916.154 kb on - strand, within Pf6N2E2_791at 916.223 kb on + strand, within Pf6N2E2_791at 916.249 kb on + strand, within Pf6N2E2_791at 916.249 kb on + strand, within Pf6N2E2_791at 916.249 kb on + strand, within Pf6N2E2_791at 916.250 kb on - strand, within Pf6N2E2_791at 916.297 kb on + strand, within Pf6N2E2_791at 916.297 kb on + strand, within Pf6N2E2_791at 916.297 kb on + strand, within Pf6N2E2_791at 916.298 kb on - strand, within Pf6N2E2_791at 916.298 kb on - strand, within Pf6N2E2_791at 916.415 kb on - strand, within Pf6N2E2_791at 916.479 kb on + strand, within Pf6N2E2_791at 916.479 kb on + strand, within Pf6N2E2_791at 916.479 kb on + strand, within Pf6N2E2_791at 916.481 kb on + strand, within Pf6N2E2_791at 916.481 kb on + strand, within Pf6N2E2_791at 916.482 kb on - strand, within Pf6N2E2_791at 916.560 kb on - strand, within Pf6N2E2_791at 916.589 kb on + strand, within Pf6N2E2_791at 916.589 kb on + strand, within Pf6N2E2_791at 916.590 kb on - strand, within Pf6N2E2_791at 916.610 kb on - strand, within Pf6N2E2_791at 916.651 kb on + strand, within Pf6N2E2_791at 916.651 kb on + strand, within Pf6N2E2_791at 916.740 kb on + strandat 916.897 kb on + strandat 916.897 kb on + strandat 916.945 kb on + strandat 917.256 kb on + strand, within Pf6N2E2_792at 917.256 kb on + strand, within Pf6N2E2_792at 917.256 kb on + strand, within Pf6N2E2_792at 917.256 kb on + strand, within Pf6N2E2_792at 917.270 kb on + strand, within Pf6N2E2_792at 917.270 kb on + strand, within Pf6N2E2_792at 917.271 kb on - strand, within Pf6N2E2_792at 917.432 kb on + strand, within Pf6N2E2_792at 917.666 kb on + strand, within Pf6N2E2_792at 917.708 kb on + strand, within Pf6N2E2_792at 917.747 kb on + strand, within Pf6N2E2_792at 917.747 kb on + strand, within Pf6N2E2_792at 917.747 kb on + strandat 917.748 kb on - strand, within Pf6N2E2_792at 917.748 kb on - strand, within Pf6N2E2_792at 917.748 kb on - strand, within Pf6N2E2_792at 917.748 kb on - strand, within Pf6N2E2_792at 917.766 kb on + strand, within Pf6N2E2_792at 917.766 kb on + strand, within Pf6N2E2_792at 917.767 kb on - strand, within Pf6N2E2_792at 917.784 kb on + strand, within Pf6N2E2_792at 917.784 kb on + strand, within Pf6N2E2_792at 917.785 kb on - strand, within Pf6N2E2_792at 917.880 kb on + strand, within Pf6N2E2_792at 917.880 kb on + strand, within Pf6N2E2_792

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxylamine 0.5 M
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913,626 - Pf6N2E2_790 0.62 +0.6
913,729 + Pf6N2E2_790 0.66 -0.1
913,729 + Pf6N2E2_790 0.66 -0.7
913,834 + Pf6N2E2_790 0.70 +0.4
913,834 + Pf6N2E2_790 0.70 -1.2
913,834 + Pf6N2E2_790 0.70 -0.1
913,834 + Pf6N2E2_790 0.70 -1.9
913,834 + Pf6N2E2_790 0.70 -0.6
913,834 + Pf6N2E2_790 0.70 +0.1
913,835 - Pf6N2E2_790 0.70 -2.3
913,835 - Pf6N2E2_790 0.70 -0.2
913,836 + Pf6N2E2_790 0.70 +0.7
913,836 + Pf6N2E2_790 0.70 +0.8
913,836 + Pf6N2E2_790 0.70 -1.7
913,836 + Pf6N2E2_790 0.70 +1.6
913,836 + Pf6N2E2_790 0.70 +0.2
914,015 - Pf6N2E2_790 0.78 +0.6
914,116 + Pf6N2E2_790 0.82 -0.7
914,116 + Pf6N2E2_790 0.82 -1.2
914,116 + Pf6N2E2_790 0.82 -1.9
914,116 + Pf6N2E2_790 0.82 +2.2
914,180 - Pf6N2E2_790 0.85 -0.9
914,182 - Pf6N2E2_790 0.85 +2.4
914,548 + +1.8
914,549 - -1.8
914,560 + +0.6
914,632 + +1.5
914,749 + -1.1
914,859 + Pf6N2E2_791 0.11 +1.2
914,859 + +1.6
914,859 + Pf6N2E2_791 0.11 -0.9
914,860 - Pf6N2E2_791 0.11 +1.6
914,860 - Pf6N2E2_791 0.11 -2.5
914,860 - Pf6N2E2_791 0.11 +2.8
914,860 - Pf6N2E2_791 0.11 +1.8
914,863 + Pf6N2E2_791 0.11 +0.1
914,864 - Pf6N2E2_791 0.11 +0.4
914,864 - Pf6N2E2_791 0.11 +2.0
914,972 + Pf6N2E2_791 0.16 -1.7
914,972 + Pf6N2E2_791 0.16 -0.7
914,973 - Pf6N2E2_791 0.16 +2.4
914,973 - Pf6N2E2_791 0.16 +0.6
914,979 + Pf6N2E2_791 0.16 +0.6
914,981 + Pf6N2E2_791 0.17 +0.9
914,981 + Pf6N2E2_791 0.17 +1.0
914,981 + Pf6N2E2_791 0.17 -2.2
914,982 - Pf6N2E2_791 0.17 +1.9
914,982 - Pf6N2E2_791 0.17 +1.6
915,216 - Pf6N2E2_791 0.27 -0.4
915,333 + Pf6N2E2_791 0.32 +1.0
915,363 + Pf6N2E2_791 0.33 +2.4
915,363 + Pf6N2E2_791 0.33 -1.4
915,364 - Pf6N2E2_791 0.33 -1.5
915,481 + Pf6N2E2_791 0.38 +0.6
915,482 - Pf6N2E2_791 0.38 -0.0
915,515 + Pf6N2E2_791 0.40 -1.8
915,515 + Pf6N2E2_791 0.40 +0.9
915,528 + Pf6N2E2_791 0.40 -1.2
915,529 - Pf6N2E2_791 0.41 -0.4
915,530 + Pf6N2E2_791 0.41 +0.9
915,530 + Pf6N2E2_791 0.41 -1.4
915,543 + Pf6N2E2_791 0.41 -1.9
915,704 + Pf6N2E2_791 0.48 -1.1
915,704 + Pf6N2E2_791 0.48 +1.5
915,704 + Pf6N2E2_791 0.48 -1.8
915,705 - Pf6N2E2_791 0.48 -0.4
915,787 + Pf6N2E2_791 0.52 +2.1
915,787 + Pf6N2E2_791 0.52 -0.4
915,787 + Pf6N2E2_791 0.52 +0.2
915,788 - Pf6N2E2_791 0.52 +0.5
915,822 + Pf6N2E2_791 0.53 +2.2
915,822 + Pf6N2E2_791 0.53 -2.6
915,822 + Pf6N2E2_791 0.53 +2.6
915,822 + Pf6N2E2_791 0.53 +2.2
915,822 + Pf6N2E2_791 0.53 +0.3
915,822 + Pf6N2E2_791 0.53 -0.9
915,822 + Pf6N2E2_791 0.53 +0.8
915,822 + Pf6N2E2_791 0.53 -1.2
915,822 + Pf6N2E2_791 0.53 +1.1
915,822 + Pf6N2E2_791 0.53 -0.8
915,823 - Pf6N2E2_791 0.53 +0.3
915,823 - Pf6N2E2_791 0.53 +2.4
915,823 - Pf6N2E2_791 0.53 -0.6
915,823 - Pf6N2E2_791 0.53 +1.1
915,823 - Pf6N2E2_791 0.53 +1.8
915,824 + Pf6N2E2_791 0.53 +1.3
915,967 + Pf6N2E2_791 0.60 -0.3
915,967 + Pf6N2E2_791 0.60 +1.1
915,967 + Pf6N2E2_791 0.60 +1.2
915,967 + Pf6N2E2_791 0.60 +1.0
915,968 - Pf6N2E2_791 0.60 -3.1
915,968 - Pf6N2E2_791 0.60 -1.4
915,968 - Pf6N2E2_791 0.60 +0.1
915,968 - Pf6N2E2_791 0.60 +0.4
916,023 + Pf6N2E2_791 0.62 -2.3
916,023 + Pf6N2E2_791 0.62 +0.6
916,023 + Pf6N2E2_791 0.62 +1.1
916,023 + Pf6N2E2_791 0.62 +1.3
916,023 + Pf6N2E2_791 0.62 -0.1
916,024 - Pf6N2E2_791 0.62 +1.1
916,153 + Pf6N2E2_791 0.68 +2.4
916,153 + Pf6N2E2_791 0.68 -3.2
916,153 + Pf6N2E2_791 0.68 -2.4
916,154 - Pf6N2E2_791 0.68 +1.6
916,223 + Pf6N2E2_791 0.71 +1.4
916,249 + Pf6N2E2_791 0.72 -2.1
916,249 + Pf6N2E2_791 0.72 +0.5
916,249 + Pf6N2E2_791 0.72 +1.0
916,250 - Pf6N2E2_791 0.72 +2.5
916,297 + Pf6N2E2_791 0.74 -1.9
916,297 + Pf6N2E2_791 0.74 -1.5
916,297 + Pf6N2E2_791 0.74 +0.2
916,298 - Pf6N2E2_791 0.74 -1.5
916,298 - Pf6N2E2_791 0.74 +0.8
916,415 - Pf6N2E2_791 0.79 +0.1
916,479 + Pf6N2E2_791 0.82 -1.4
916,479 + Pf6N2E2_791 0.82 +0.3
916,479 + Pf6N2E2_791 0.82 +1.4
916,481 + Pf6N2E2_791 0.82 -0.8
916,481 + Pf6N2E2_791 0.82 -2.1
916,482 - Pf6N2E2_791 0.82 +2.2
916,560 - Pf6N2E2_791 0.86 -2.2
916,589 + Pf6N2E2_791 0.87 +0.8
916,589 + Pf6N2E2_791 0.87 +2.5
916,590 - Pf6N2E2_791 0.87 +2.4
916,610 - Pf6N2E2_791 0.88 -2.3
916,651 + Pf6N2E2_791 0.90 +2.1
916,651 + Pf6N2E2_791 0.90 -0.4
916,740 + +0.2
916,897 + -0.9
916,897 + +1.0
916,945 + -0.7
917,256 + Pf6N2E2_792 0.12 +0.8
917,256 + Pf6N2E2_792 0.12 +0.2
917,256 + Pf6N2E2_792 0.12 -1.5
917,256 + Pf6N2E2_792 0.12 -1.4
917,270 + Pf6N2E2_792 0.12 +1.0
917,270 + Pf6N2E2_792 0.12 +0.8
917,271 - Pf6N2E2_792 0.12 -1.7
917,432 + Pf6N2E2_792 0.18 +1.2
917,666 + Pf6N2E2_792 0.26 +1.6
917,708 + Pf6N2E2_792 0.27 +2.4
917,747 + Pf6N2E2_792 0.29 +0.1
917,747 + Pf6N2E2_792 0.29 +0.1
917,747 + -0.7
917,748 - Pf6N2E2_792 0.29 +1.4
917,748 - Pf6N2E2_792 0.29 +1.2
917,748 - Pf6N2E2_792 0.29 +0.6
917,748 - Pf6N2E2_792 0.29 -1.2
917,766 + Pf6N2E2_792 0.29 +0.3
917,766 + Pf6N2E2_792 0.29 +0.4
917,767 - Pf6N2E2_792 0.29 -0.7
917,784 + Pf6N2E2_792 0.30 +1.4
917,784 + Pf6N2E2_792 0.30 +1.2
917,785 - Pf6N2E2_792 0.30 +1.1
917,880 + Pf6N2E2_792 0.33 +0.2
917,880 + Pf6N2E2_792 0.33 +0.1

Or see this region's nucleotide sequence