Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_783

Experiment: Hydroxylamine 0.5 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_782 and Pf6N2E2_783 are separated by 44 nucleotidesPf6N2E2_783 and Pf6N2E2_784 are separated by 61 nucleotides Pf6N2E2_782 - hypothetical protein, at 894,893 to 896,386 _782 Pf6N2E2_783 - hypothetical protein, at 896,431 to 897,528 _783 Pf6N2E2_784 - Outer membrane usher protein FIMD, at 897,590 to 900,085 _784 Position (kb) 896 897 898Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 895.444 kb on + strand, within Pf6N2E2_782at 895.445 kb on - strand, within Pf6N2E2_782at 895.445 kb on - strand, within Pf6N2E2_782at 895.445 kb on - strand, within Pf6N2E2_782at 895.451 kb on + strand, within Pf6N2E2_782at 895.451 kb on + strand, within Pf6N2E2_782at 895.451 kb on + strand, within Pf6N2E2_782at 895.452 kb on - strand, within Pf6N2E2_782at 895.491 kb on + strand, within Pf6N2E2_782at 895.491 kb on + strand, within Pf6N2E2_782at 895.547 kb on + strand, within Pf6N2E2_782at 895.548 kb on - strand, within Pf6N2E2_782at 895.548 kb on - strand, within Pf6N2E2_782at 895.548 kb on - strand, within Pf6N2E2_782at 895.692 kb on - strand, within Pf6N2E2_782at 895.765 kb on + strand, within Pf6N2E2_782at 895.766 kb on - strand, within Pf6N2E2_782at 895.859 kb on + strand, within Pf6N2E2_782at 895.860 kb on - strand, within Pf6N2E2_782at 895.916 kb on + strand, within Pf6N2E2_782at 895.916 kb on + strandat 895.916 kb on + strand, within Pf6N2E2_782at 895.916 kb on + strand, within Pf6N2E2_782at 896.135 kb on + strand, within Pf6N2E2_782at 896.135 kb on + strand, within Pf6N2E2_782at 896.135 kb on + strand, within Pf6N2E2_782at 896.135 kb on + strand, within Pf6N2E2_782at 896.136 kb on - strand, within Pf6N2E2_782at 896.136 kb on - strand, within Pf6N2E2_782at 896.262 kb on + strandat 896.262 kb on + strandat 896.335 kb on + strandat 896.335 kb on + strandat 896.335 kb on + strandat 896.335 kb on + strandat 896.336 kb on - strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.365 kb on - strandat 896.365 kb on - strandat 896.365 kb on - strandat 896.365 kb on - strandat 896.365 kb on - strandat 896.365 kb on - strandat 896.365 kb on - strandat 896.402 kb on + strandat 896.402 kb on + strandat 896.402 kb on + strandat 896.402 kb on + strandat 896.402 kb on + strandat 896.403 kb on - strandat 896.403 kb on - strandat 896.403 kb on - strandat 896.438 kb on + strandat 896.438 kb on + strandat 896.438 kb on + strandat 896.439 kb on - strandat 896.494 kb on + strandat 896.502 kb on - strandat 896.502 kb on - strandat 896.614 kb on + strand, within Pf6N2E2_783at 896.614 kb on + strand, within Pf6N2E2_783at 896.615 kb on - strand, within Pf6N2E2_783at 896.763 kb on + strand, within Pf6N2E2_783at 896.763 kb on + strand, within Pf6N2E2_783at 896.763 kb on + strand, within Pf6N2E2_783at 896.763 kb on + strand, within Pf6N2E2_783at 896.764 kb on - strand, within Pf6N2E2_783at 896.825 kb on - strand, within Pf6N2E2_783at 897.005 kb on + strand, within Pf6N2E2_783at 897.005 kb on + strand, within Pf6N2E2_783at 897.005 kb on + strand, within Pf6N2E2_783at 897.006 kb on - strand, within Pf6N2E2_783at 897.006 kb on - strand, within Pf6N2E2_783at 897.006 kb on - strand, within Pf6N2E2_783at 897.027 kb on + strand, within Pf6N2E2_783at 897.027 kb on + strand, within Pf6N2E2_783at 897.028 kb on - strand, within Pf6N2E2_783at 897.028 kb on - strand, within Pf6N2E2_783at 897.028 kb on - strand, within Pf6N2E2_783at 897.034 kb on + strand, within Pf6N2E2_783at 897.034 kb on + strand, within Pf6N2E2_783at 897.034 kb on + strand, within Pf6N2E2_783at 897.035 kb on - strand, within Pf6N2E2_783at 897.035 kb on - strand, within Pf6N2E2_783at 897.086 kb on + strand, within Pf6N2E2_783at 897.174 kb on + strandat 897.174 kb on + strand, within Pf6N2E2_783at 897.175 kb on - strand, within Pf6N2E2_783at 897.175 kb on - strand, within Pf6N2E2_783at 897.175 kb on - strand, within Pf6N2E2_783at 897.285 kb on + strand, within Pf6N2E2_783at 897.361 kb on + strand, within Pf6N2E2_783at 897.383 kb on + strand, within Pf6N2E2_783at 897.383 kb on + strand, within Pf6N2E2_783at 897.383 kb on + strand, within Pf6N2E2_783at 897.383 kb on + strand, within Pf6N2E2_783at 897.383 kb on + strand, within Pf6N2E2_783at 897.383 kb on + strand, within Pf6N2E2_783at 897.383 kb on + strand, within Pf6N2E2_783at 897.383 kb on + strand, within Pf6N2E2_783at 897.383 kb on + strand, within Pf6N2E2_783at 897.384 kb on - strand, within Pf6N2E2_783at 897.558 kb on + strandat 897.558 kb on + strandat 897.558 kb on + strandat 897.559 kb on - strandat 897.559 kb on - strandat 897.697 kb on + strandat 897.697 kb on + strandat 897.731 kb on + strandat 897.731 kb on + strandat 897.731 kb on + strandat 897.731 kb on + strandat 897.732 kb on - strandat 898.062 kb on - strand, within Pf6N2E2_784at 898.062 kb on - strand, within Pf6N2E2_784at 898.062 kb on - strand, within Pf6N2E2_784at 898.062 kb on - strand, within Pf6N2E2_784at 898.062 kb on - strand, within Pf6N2E2_784at 898.161 kb on + strand, within Pf6N2E2_784at 898.217 kb on + strand, within Pf6N2E2_784at 898.217 kb on + strand, within Pf6N2E2_784at 898.218 kb on - strand, within Pf6N2E2_784at 898.218 kb on - strand, within Pf6N2E2_784at 898.272 kb on + strand, within Pf6N2E2_784at 898.297 kb on + strand, within Pf6N2E2_784at 898.343 kb on + strand, within Pf6N2E2_784at 898.344 kb on - strand, within Pf6N2E2_784at 898.391 kb on + strand, within Pf6N2E2_784at 898.391 kb on + strand, within Pf6N2E2_784at 898.392 kb on - strand, within Pf6N2E2_784at 898.392 kb on - strand, within Pf6N2E2_784at 898.438 kb on + strand, within Pf6N2E2_784at 898.461 kb on + strand, within Pf6N2E2_784at 898.462 kb on - strand, within Pf6N2E2_784at 898.462 kb on - strand, within Pf6N2E2_784at 898.468 kb on + strand, within Pf6N2E2_784at 898.470 kb on + strand, within Pf6N2E2_784at 898.470 kb on + strand, within Pf6N2E2_784at 898.471 kb on - strand, within Pf6N2E2_784

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxylamine 0.5 M
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895,444 + Pf6N2E2_782 0.37 +0.2
895,445 - Pf6N2E2_782 0.37 +1.3
895,445 - Pf6N2E2_782 0.37 -0.4
895,445 - Pf6N2E2_782 0.37 +1.6
895,451 + Pf6N2E2_782 0.37 -2.4
895,451 + Pf6N2E2_782 0.37 -0.1
895,451 + Pf6N2E2_782 0.37 -0.6
895,452 - Pf6N2E2_782 0.37 +0.7
895,491 + Pf6N2E2_782 0.40 -1.2
895,491 + Pf6N2E2_782 0.40 +1.0
895,547 + Pf6N2E2_782 0.44 +1.2
895,548 - Pf6N2E2_782 0.44 +0.2
895,548 - Pf6N2E2_782 0.44 +0.2
895,548 - Pf6N2E2_782 0.44 +0.5
895,692 - Pf6N2E2_782 0.53 -2.4
895,765 + Pf6N2E2_782 0.58 +0.1
895,766 - Pf6N2E2_782 0.58 +1.1
895,859 + Pf6N2E2_782 0.65 +1.1
895,860 - Pf6N2E2_782 0.65 +1.8
895,916 + Pf6N2E2_782 0.68 +1.7
895,916 + +2.2
895,916 + Pf6N2E2_782 0.68 -2.2
895,916 + Pf6N2E2_782 0.68 -2.9
896,135 + Pf6N2E2_782 0.83 -1.4
896,135 + Pf6N2E2_782 0.83 -0.4
896,135 + Pf6N2E2_782 0.83 +0.9
896,135 + Pf6N2E2_782 0.83 -2.3
896,136 - Pf6N2E2_782 0.83 +0.1
896,136 - Pf6N2E2_782 0.83 +2.0
896,262 + +0.2
896,262 + +0.1
896,335 + -0.2
896,335 + +0.1
896,335 + +1.6
896,335 + -2.1
896,336 - +1.0
896,364 + +1.8
896,364 + -0.4
896,364 + +0.1
896,364 + -1.3
896,364 + +0.6
896,364 + -0.9
896,364 + +2.1
896,364 + +1.2
896,364 + -0.1
896,364 + -1.4
896,364 + -1.2
896,364 + +2.2
896,365 - +1.4
896,365 - -2.4
896,365 - +1.6
896,365 - -0.6
896,365 - -0.7
896,365 - -1.4
896,365 - -0.9
896,402 + +1.0
896,402 + -0.6
896,402 + -0.9
896,402 + -0.7
896,402 + +1.8
896,403 - +0.5
896,403 - -0.2
896,403 - +1.6
896,438 + +0.8
896,438 + +0.6
896,438 + +2.5
896,439 - +0.2
896,494 + +1.9
896,502 - +1.1
896,502 - -2.3
896,614 + Pf6N2E2_783 0.17 +0.8
896,614 + Pf6N2E2_783 0.17 -0.9
896,615 - Pf6N2E2_783 0.17 +1.0
896,763 + Pf6N2E2_783 0.30 +0.4
896,763 + Pf6N2E2_783 0.30 +0.6
896,763 + Pf6N2E2_783 0.30 +0.9
896,763 + Pf6N2E2_783 0.30 -1.2
896,764 - Pf6N2E2_783 0.30 +1.1
896,825 - Pf6N2E2_783 0.36 -0.9
897,005 + Pf6N2E2_783 0.52 +0.1
897,005 + Pf6N2E2_783 0.52 +0.5
897,005 + Pf6N2E2_783 0.52 -0.6
897,006 - Pf6N2E2_783 0.52 -1.8
897,006 - Pf6N2E2_783 0.52 -2.4
897,006 - Pf6N2E2_783 0.52 +5.0
897,027 + Pf6N2E2_783 0.54 -0.4
897,027 + Pf6N2E2_783 0.54 -0.7
897,028 - Pf6N2E2_783 0.54 +2.5
897,028 - Pf6N2E2_783 0.54 -1.9
897,028 - Pf6N2E2_783 0.54 +0.9
897,034 + Pf6N2E2_783 0.55 -2.5
897,034 + Pf6N2E2_783 0.55 +1.6
897,034 + Pf6N2E2_783 0.55 -0.7
897,035 - Pf6N2E2_783 0.55 -0.4
897,035 - Pf6N2E2_783 0.55 +0.7
897,086 + Pf6N2E2_783 0.60 -0.1
897,174 + +0.1
897,174 + Pf6N2E2_783 0.68 +2.4
897,175 - Pf6N2E2_783 0.68 -0.0
897,175 - Pf6N2E2_783 0.68 -1.7
897,175 - Pf6N2E2_783 0.68 +1.2
897,285 + Pf6N2E2_783 0.78 +1.6
897,361 + Pf6N2E2_783 0.85 +1.9
897,383 + Pf6N2E2_783 0.87 -0.4
897,383 + Pf6N2E2_783 0.87 +0.4
897,383 + Pf6N2E2_783 0.87 +1.3
897,383 + Pf6N2E2_783 0.87 -1.4
897,383 + Pf6N2E2_783 0.87 -0.9
897,383 + Pf6N2E2_783 0.87 +1.6
897,383 + Pf6N2E2_783 0.87 -0.4
897,383 + Pf6N2E2_783 0.87 +2.9
897,383 + Pf6N2E2_783 0.87 -2.2
897,384 - Pf6N2E2_783 0.87 +1.4
897,558 + +1.0
897,558 + +0.6
897,558 + +0.8
897,559 - -1.5
897,559 - +0.1
897,697 + -2.6
897,697 + -0.2
897,731 + -1.3
897,731 + -0.5
897,731 + +1.1
897,731 + +0.9
897,732 - -1.2
898,062 - Pf6N2E2_784 0.19 +1.1
898,062 - Pf6N2E2_784 0.19 +2.3
898,062 - Pf6N2E2_784 0.19 -0.3
898,062 - Pf6N2E2_784 0.19 -1.3
898,062 - Pf6N2E2_784 0.19 +0.5
898,161 + Pf6N2E2_784 0.23 +0.8
898,217 + Pf6N2E2_784 0.25 -1.8
898,217 + Pf6N2E2_784 0.25 +1.3
898,218 - Pf6N2E2_784 0.25 -0.2
898,218 - Pf6N2E2_784 0.25 -3.0
898,272 + Pf6N2E2_784 0.27 -2.2
898,297 + Pf6N2E2_784 0.28 +0.5
898,343 + Pf6N2E2_784 0.30 -1.2
898,344 - Pf6N2E2_784 0.30 -0.5
898,391 + Pf6N2E2_784 0.32 +0.8
898,391 + Pf6N2E2_784 0.32 +0.3
898,392 - Pf6N2E2_784 0.32 -2.3
898,392 - Pf6N2E2_784 0.32 +1.4
898,438 + Pf6N2E2_784 0.34 +0.1
898,461 + Pf6N2E2_784 0.35 -2.3
898,462 - Pf6N2E2_784 0.35 +1.5
898,462 - Pf6N2E2_784 0.35 +1.7
898,468 + Pf6N2E2_784 0.35 -0.0
898,470 + Pf6N2E2_784 0.35 +1.0
898,470 + Pf6N2E2_784 0.35 +1.0
898,471 - Pf6N2E2_784 0.35 -0.4

Or see this region's nucleotide sequence