Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5395

Experiment: Hydroxylamine 0.5 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5392 and Pf6N2E2_5393 overlap by 4 nucleotidesPf6N2E2_5393 and Pf6N2E2_5394 are separated by 3 nucleotidesPf6N2E2_5394 and Pf6N2E2_5395 are separated by 298 nucleotidesPf6N2E2_5395 and Pf6N2E2_5396 are separated by 128 nucleotidesPf6N2E2_5396 and Pf6N2E2_5397 are separated by 89 nucleotides Pf6N2E2_5392 - Molybdenum cofactor biosynthesis protein MoaC, at 6,199,475 to 6,199,948 _5392 Pf6N2E2_5393 - Molybdenum cofactor biosynthesis protein MoaD, at 6,199,945 to 6,200,187 _5393 Pf6N2E2_5394 - Molybdenum cofactor biosynthesis protein MoaE, at 6,200,191 to 6,200,643 _5394 Pf6N2E2_5395 - Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein, at 6,200,942 to 6,201,676 _5395 Pf6N2E2_5396 - YheO-like PAS domain, at 6,201,805 to 6,202,431 _5396 Pf6N2E2_5397 - Sarcosine oxidase beta subunit (EC 1.5.3.1), at 6,202,521 to 6,203,477 _5397 Position (kb) 6200 6201 6202Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6200.533 kb on + strand, within Pf6N2E2_5394at 6200.533 kb on + strand, within Pf6N2E2_5394at 6200.534 kb on - strand, within Pf6N2E2_5394at 6200.534 kb on - strand, within Pf6N2E2_5394at 6200.641 kb on + strandat 6200.641 kb on + strandat 6200.642 kb on - strandat 6200.642 kb on - strandat 6200.719 kb on + strandat 6200.719 kb on + strandat 6200.719 kb on + strandat 6200.719 kb on + strandat 6200.719 kb on + strandat 6200.720 kb on - strandat 6200.720 kb on - strandat 6200.720 kb on - strandat 6200.720 kb on - strandat 6200.720 kb on - strandat 6200.720 kb on - strandat 6200.832 kb on + strandat 6201.053 kb on + strand, within Pf6N2E2_5395at 6201.053 kb on + strand, within Pf6N2E2_5395at 6201.054 kb on - strand, within Pf6N2E2_5395at 6201.054 kb on - strand, within Pf6N2E2_5395at 6201.221 kb on + strand, within Pf6N2E2_5395at 6201.221 kb on + strand, within Pf6N2E2_5395at 6201.221 kb on + strand, within Pf6N2E2_5395at 6201.222 kb on - strand, within Pf6N2E2_5395at 6201.222 kb on - strand, within Pf6N2E2_5395at 6201.222 kb on - strand, within Pf6N2E2_5395at 6201.224 kb on + strand, within Pf6N2E2_5395at 6201.224 kb on + strand, within Pf6N2E2_5395at 6201.225 kb on - strand, within Pf6N2E2_5395at 6201.225 kb on - strand, within Pf6N2E2_5395at 6201.225 kb on - strand, within Pf6N2E2_5395at 6201.225 kb on - strand, within Pf6N2E2_5395at 6201.278 kb on + strand, within Pf6N2E2_5395at 6201.278 kb on + strand, within Pf6N2E2_5395at 6201.279 kb on - strand, within Pf6N2E2_5395at 6201.279 kb on - strand, within Pf6N2E2_5395at 6201.279 kb on - strand, within Pf6N2E2_5395at 6201.380 kb on + strand, within Pf6N2E2_5395at 6201.380 kb on + strand, within Pf6N2E2_5395at 6201.381 kb on - strand, within Pf6N2E2_5395at 6201.382 kb on + strand, within Pf6N2E2_5395at 6201.382 kb on + strand, within Pf6N2E2_5395at 6201.382 kb on + strand, within Pf6N2E2_5395at 6201.382 kb on + strand, within Pf6N2E2_5395at 6201.382 kb on + strand, within Pf6N2E2_5395at 6201.382 kb on + strand, within Pf6N2E2_5395at 6201.383 kb on - strand, within Pf6N2E2_5395at 6201.383 kb on - strand, within Pf6N2E2_5395at 6201.383 kb on - strand, within Pf6N2E2_5395at 6201.383 kb on - strand, within Pf6N2E2_5395at 6201.383 kb on - strand, within Pf6N2E2_5395at 6201.383 kb on - strand, within Pf6N2E2_5395at 6201.383 kb on - strand, within Pf6N2E2_5395at 6201.383 kb on - strand, within Pf6N2E2_5395at 6201.383 kb on - strand, within Pf6N2E2_5395at 6201.401 kb on + strand, within Pf6N2E2_5395at 6201.401 kb on + strand, within Pf6N2E2_5395at 6201.401 kb on + strand, within Pf6N2E2_5395at 6201.401 kb on + strand, within Pf6N2E2_5395at 6201.401 kb on + strand, within Pf6N2E2_5395at 6201.401 kb on + strand, within Pf6N2E2_5395at 6201.491 kb on + strand, within Pf6N2E2_5395at 6201.527 kb on + strand, within Pf6N2E2_5395at 6201.528 kb on - strand, within Pf6N2E2_5395at 6201.626 kb on + strandat 6201.626 kb on + strandat 6201.626 kb on + strandat 6201.626 kb on + strandat 6201.647 kb on + strandat 6201.647 kb on + strandat 6201.647 kb on + strandat 6201.647 kb on + strandat 6201.665 kb on + strandat 6201.665 kb on + strandat 6201.666 kb on - strandat 6201.677 kb on + strandat 6201.677 kb on + strandat 6201.678 kb on - strandat 6201.678 kb on - strandat 6201.728 kb on + strandat 6201.728 kb on + strandat 6201.728 kb on + strandat 6201.728 kb on + strandat 6201.728 kb on + strandat 6201.729 kb on - strandat 6201.729 kb on - strandat 6201.729 kb on - strandat 6201.729 kb on - strandat 6201.729 kb on - strandat 6201.729 kb on - strandat 6201.729 kb on - strandat 6201.729 kb on - strandat 6201.729 kb on - strandat 6201.729 kb on - strandat 6201.746 kb on + strandat 6201.747 kb on - strandat 6201.833 kb on + strandat 6201.833 kb on + strandat 6201.833 kb on + strandat 6201.834 kb on - strandat 6201.834 kb on - strandat 6201.852 kb on + strandat 6201.872 kb on + strand, within Pf6N2E2_5396at 6201.872 kb on + strand, within Pf6N2E2_5396at 6201.872 kb on + strand, within Pf6N2E2_5396at 6201.872 kb on + strand, within Pf6N2E2_5396at 6201.872 kb on + strand, within Pf6N2E2_5396at 6201.872 kb on + strand, within Pf6N2E2_5396at 6201.873 kb on - strand, within Pf6N2E2_5396at 6201.873 kb on - strand, within Pf6N2E2_5396at 6201.873 kb on - strand, within Pf6N2E2_5396at 6201.873 kb on - strand, within Pf6N2E2_5396at 6201.873 kb on - strand, within Pf6N2E2_5396at 6201.873 kb on - strand, within Pf6N2E2_5396at 6201.873 kb on - strand, within Pf6N2E2_5396at 6201.873 kb on - strand, within Pf6N2E2_5396at 6201.873 kb on - strand, within Pf6N2E2_5396at 6201.873 kb on - strand, within Pf6N2E2_5396at 6201.873 kb on - strand, within Pf6N2E2_5396at 6201.873 kb on - strand, within Pf6N2E2_5396at 6202.110 kb on + strand, within Pf6N2E2_5396at 6202.111 kb on - strand, within Pf6N2E2_5396at 6202.162 kb on + strand, within Pf6N2E2_5396at 6202.163 kb on - strand, within Pf6N2E2_5396at 6202.224 kb on + strand, within Pf6N2E2_5396at 6202.224 kb on + strand, within Pf6N2E2_5396at 6202.224 kb on + strand, within Pf6N2E2_5396at 6202.224 kb on + strand, within Pf6N2E2_5396at 6202.224 kb on + strand, within Pf6N2E2_5396at 6202.224 kb on + strand, within Pf6N2E2_5396at 6202.224 kb on + strand, within Pf6N2E2_5396at 6202.224 kb on + strand, within Pf6N2E2_5396at 6202.224 kb on + strand, within Pf6N2E2_5396at 6202.225 kb on - strand, within Pf6N2E2_5396at 6202.225 kb on - strand, within Pf6N2E2_5396at 6202.225 kb on - strand, within Pf6N2E2_5396at 6202.225 kb on - strand, within Pf6N2E2_5396at 6202.225 kb on - strand, within Pf6N2E2_5396at 6202.225 kb on - strand, within Pf6N2E2_5396at 6202.225 kb on - strand, within Pf6N2E2_5396at 6202.297 kb on - strand, within Pf6N2E2_5396at 6202.307 kb on + strand, within Pf6N2E2_5396at 6202.307 kb on + strand, within Pf6N2E2_5396at 6202.308 kb on - strand, within Pf6N2E2_5396at 6202.308 kb on - strand, within Pf6N2E2_5396at 6202.308 kb on - strand, within Pf6N2E2_5396at 6202.308 kb on - strand, within Pf6N2E2_5396at 6202.358 kb on + strand, within Pf6N2E2_5396at 6202.358 kb on + strand, within Pf6N2E2_5396

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxylamine 0.5 M
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6,200,533 + Pf6N2E2_5394 0.75 +0.7
6,200,533 + Pf6N2E2_5394 0.75 +1.2
6,200,534 - Pf6N2E2_5394 0.76 +1.0
6,200,534 - Pf6N2E2_5394 0.76 +0.2
6,200,641 + -1.7
6,200,641 + +0.3
6,200,642 - +1.2
6,200,642 - +1.3
6,200,719 + -1.5
6,200,719 + -1.4
6,200,719 + -1.8
6,200,719 + -1.0
6,200,719 + +2.7
6,200,720 - +2.7
6,200,720 - +2.0
6,200,720 - +1.1
6,200,720 - +0.1
6,200,720 - -0.0
6,200,720 - -1.5
6,200,832 + -0.4
6,201,053 + Pf6N2E2_5395 0.15 -1.1
6,201,053 + Pf6N2E2_5395 0.15 +1.0
6,201,054 - Pf6N2E2_5395 0.15 -1.3
6,201,054 - Pf6N2E2_5395 0.15 +1.8
6,201,221 + Pf6N2E2_5395 0.38 -2.6
6,201,221 + Pf6N2E2_5395 0.38 -1.3
6,201,221 + Pf6N2E2_5395 0.38 +2.7
6,201,222 - Pf6N2E2_5395 0.38 -2.9
6,201,222 - Pf6N2E2_5395 0.38 +2.1
6,201,222 - Pf6N2E2_5395 0.38 +1.0
6,201,224 + Pf6N2E2_5395 0.38 -0.7
6,201,224 + Pf6N2E2_5395 0.38 -0.4
6,201,225 - Pf6N2E2_5395 0.39 -1.3
6,201,225 - Pf6N2E2_5395 0.39 -0.3
6,201,225 - Pf6N2E2_5395 0.39 -1.6
6,201,225 - Pf6N2E2_5395 0.39 +2.2
6,201,278 + Pf6N2E2_5395 0.46 -2.0
6,201,278 + Pf6N2E2_5395 0.46 -3.1
6,201,279 - Pf6N2E2_5395 0.46 +2.7
6,201,279 - Pf6N2E2_5395 0.46 +0.8
6,201,279 - Pf6N2E2_5395 0.46 -2.7
6,201,380 + Pf6N2E2_5395 0.60 -0.2
6,201,380 + Pf6N2E2_5395 0.60 -0.7
6,201,381 - Pf6N2E2_5395 0.60 +1.0
6,201,382 + Pf6N2E2_5395 0.60 +1.3
6,201,382 + Pf6N2E2_5395 0.60 -0.1
6,201,382 + Pf6N2E2_5395 0.60 +1.1
6,201,382 + Pf6N2E2_5395 0.60 -0.8
6,201,382 + Pf6N2E2_5395 0.60 +1.0
6,201,382 + Pf6N2E2_5395 0.60 +0.2
6,201,383 - Pf6N2E2_5395 0.60 +0.1
6,201,383 - Pf6N2E2_5395 0.60 -0.6
6,201,383 - Pf6N2E2_5395 0.60 -0.6
6,201,383 - Pf6N2E2_5395 0.60 +1.7
6,201,383 - Pf6N2E2_5395 0.60 -2.2
6,201,383 - Pf6N2E2_5395 0.60 -0.3
6,201,383 - Pf6N2E2_5395 0.60 +1.0
6,201,383 - Pf6N2E2_5395 0.60 -0.4
6,201,383 - Pf6N2E2_5395 0.60 -1.4
6,201,401 + Pf6N2E2_5395 0.62 -2.8
6,201,401 + Pf6N2E2_5395 0.62 +1.4
6,201,401 + Pf6N2E2_5395 0.62 -1.9
6,201,401 + Pf6N2E2_5395 0.62 -0.4
6,201,401 + Pf6N2E2_5395 0.62 +1.0
6,201,401 + Pf6N2E2_5395 0.62 +2.4
6,201,491 + Pf6N2E2_5395 0.75 +1.1
6,201,527 + Pf6N2E2_5395 0.80 +0.2
6,201,528 - Pf6N2E2_5395 0.80 +0.9
6,201,626 + +0.1
6,201,626 + -3.0
6,201,626 + -0.1
6,201,626 + -0.6
6,201,647 + -0.5
6,201,647 + -1.2
6,201,647 + +0.5
6,201,647 + -1.4
6,201,665 + +0.3
6,201,665 + -0.4
6,201,666 - +1.8
6,201,677 + +0.5
6,201,677 + +0.9
6,201,678 - +2.1
6,201,678 - -2.6
6,201,728 + +0.0
6,201,728 + +1.1
6,201,728 + +1.2
6,201,728 + +1.7
6,201,728 + -0.8
6,201,729 - -0.4
6,201,729 - -0.7
6,201,729 - +0.8
6,201,729 - -2.8
6,201,729 - -2.8
6,201,729 - -0.1
6,201,729 - +0.6
6,201,729 - -2.8
6,201,729 - +0.0
6,201,729 - +1.4
6,201,746 + +0.0
6,201,747 - +1.4
6,201,833 + -1.7
6,201,833 + +0.9
6,201,833 + +0.5
6,201,834 - +0.6
6,201,834 - +1.4
6,201,852 + -2.0
6,201,872 + Pf6N2E2_5396 0.11 -1.0
6,201,872 + Pf6N2E2_5396 0.11 +0.3
6,201,872 + Pf6N2E2_5396 0.11 -0.3
6,201,872 + Pf6N2E2_5396 0.11 +1.6
6,201,872 + Pf6N2E2_5396 0.11 -1.5
6,201,872 + Pf6N2E2_5396 0.11 -3.6
6,201,873 - Pf6N2E2_5396 0.11 +2.0
6,201,873 - Pf6N2E2_5396 0.11 -1.8
6,201,873 - Pf6N2E2_5396 0.11 +0.5
6,201,873 - Pf6N2E2_5396 0.11 -0.5
6,201,873 - Pf6N2E2_5396 0.11 -1.3
6,201,873 - Pf6N2E2_5396 0.11 +0.4
6,201,873 - Pf6N2E2_5396 0.11 -1.0
6,201,873 - Pf6N2E2_5396 0.11 +0.4
6,201,873 - Pf6N2E2_5396 0.11 +0.8
6,201,873 - Pf6N2E2_5396 0.11 +0.4
6,201,873 - Pf6N2E2_5396 0.11 +0.4
6,201,873 - Pf6N2E2_5396 0.11 +0.3
6,202,110 + Pf6N2E2_5396 0.49 -0.3
6,202,111 - Pf6N2E2_5396 0.49 -1.3
6,202,162 + Pf6N2E2_5396 0.57 -2.9
6,202,163 - Pf6N2E2_5396 0.57 +1.8
6,202,224 + Pf6N2E2_5396 0.67 +0.5
6,202,224 + Pf6N2E2_5396 0.67 -0.8
6,202,224 + Pf6N2E2_5396 0.67 -2.0
6,202,224 + Pf6N2E2_5396 0.67 -1.1
6,202,224 + Pf6N2E2_5396 0.67 -1.3
6,202,224 + Pf6N2E2_5396 0.67 -3.3
6,202,224 + Pf6N2E2_5396 0.67 +1.4
6,202,224 + Pf6N2E2_5396 0.67 +1.9
6,202,224 + Pf6N2E2_5396 0.67 -2.5
6,202,225 - Pf6N2E2_5396 0.67 +1.4
6,202,225 - Pf6N2E2_5396 0.67 -0.4
6,202,225 - Pf6N2E2_5396 0.67 -2.3
6,202,225 - Pf6N2E2_5396 0.67 -3.2
6,202,225 - Pf6N2E2_5396 0.67 +1.5
6,202,225 - Pf6N2E2_5396 0.67 -1.3
6,202,225 - Pf6N2E2_5396 0.67 -3.4
6,202,297 - Pf6N2E2_5396 0.78 -1.0
6,202,307 + Pf6N2E2_5396 0.80 -0.5
6,202,307 + Pf6N2E2_5396 0.80 -1.3
6,202,308 - Pf6N2E2_5396 0.80 +0.9
6,202,308 - Pf6N2E2_5396 0.80 -0.7
6,202,308 - Pf6N2E2_5396 0.80 +1.8
6,202,308 - Pf6N2E2_5396 0.80 -1.8
6,202,358 + Pf6N2E2_5396 0.88 +1.6
6,202,358 + Pf6N2E2_5396 0.88 +0.2

Or see this region's nucleotide sequence