Experiment: Hydroxylamine 0.5 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_496 and Pf6N2E2_497 are separated by 0 nucleotides Pf6N2E2_497 and Pf6N2E2_498 are separated by 183 nucleotides
Pf6N2E2_496 - Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) <small>(from data)</small>, at 562,747 to 564,021
_496
Pf6N2E2_497 - Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism, at 564,022 to 565,389
_497
Pf6N2E2_498 - Dihydropyrimidinase (EC 3.5.2.2) <small>(from data)</small>, at 565,573 to 567,012
_498
Position (kb) 564
565
566 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 563.022 kb on - strand, within Pf6N2E2_496 at 563.022 kb on - strand, within Pf6N2E2_496 at 563.022 kb on - strand, within Pf6N2E2_496 at 563.036 kb on + strand, within Pf6N2E2_496 at 563.036 kb on + strand, within Pf6N2E2_496 at 563.036 kb on + strand, within Pf6N2E2_496 at 563.522 kb on + strand, within Pf6N2E2_496 at 563.522 kb on + strand, within Pf6N2E2_496 at 563.523 kb on - strand, within Pf6N2E2_496 at 563.523 kb on - strand, within Pf6N2E2_496 at 563.523 kb on - strand, within Pf6N2E2_496 at 563.523 kb on - strand, within Pf6N2E2_496 at 563.523 kb on - strand, within Pf6N2E2_496 at 563.523 kb on - strand, within Pf6N2E2_496 at 563.555 kb on + strand, within Pf6N2E2_496 at 563.555 kb on + strand, within Pf6N2E2_496 at 563.556 kb on - strand, within Pf6N2E2_496 at 563.556 kb on - strand, within Pf6N2E2_496 at 563.843 kb on + strand, within Pf6N2E2_496 at 563.936 kb on + strand at 563.937 kb on - strand at 563.937 kb on - strand at 563.937 kb on - strand at 563.937 kb on - strand at 563.937 kb on - strand at 564.024 kb on - strand at 564.141 kb on - strand at 564.141 kb on - strand at 564.617 kb on + strand, within Pf6N2E2_497 at 564.617 kb on + strand, within Pf6N2E2_497 at 564.815 kb on + strand, within Pf6N2E2_497 at 564.815 kb on + strand, within Pf6N2E2_497 at 564.833 kb on + strand, within Pf6N2E2_497 at 564.834 kb on - strand, within Pf6N2E2_497 at 564.834 kb on - strand, within Pf6N2E2_497 at 564.834 kb on - strand, within Pf6N2E2_497 at 565.028 kb on + strand, within Pf6N2E2_497 at 565.197 kb on + strand, within Pf6N2E2_497 at 565.198 kb on - strand, within Pf6N2E2_497 at 565.256 kb on + strand at 565.262 kb on + strand at 565.262 kb on + strand at 565.656 kb on + strand at 565.658 kb on + strand at 565.658 kb on + strand at 565.658 kb on + strand at 565.658 kb on + strand at 565.684 kb on + strand at 565.684 kb on + strand at 566.224 kb on + strand, within Pf6N2E2_498 at 566.224 kb on + strand, within Pf6N2E2_498 at 566.234 kb on + strand, within Pf6N2E2_498 at 566.262 kb on - strand, within Pf6N2E2_498 at 566.306 kb on + strand, within Pf6N2E2_498
Per-strain Table
Position Strand Gene LocusTag Fraction Hydroxylamine 0.5 M remove 563,022 - Pf6N2E2_496 0.22 -0.3 563,022 - Pf6N2E2_496 0.22 +0.7 563,022 - Pf6N2E2_496 0.22 -0.3 563,036 + Pf6N2E2_496 0.23 +1.0 563,036 + Pf6N2E2_496 0.23 -0.1 563,036 + Pf6N2E2_496 0.23 +0.4 563,522 + Pf6N2E2_496 0.61 -0.8 563,522 + Pf6N2E2_496 0.61 +2.3 563,523 - Pf6N2E2_496 0.61 -0.7 563,523 - Pf6N2E2_496 0.61 +0.1 563,523 - Pf6N2E2_496 0.61 +1.6 563,523 - Pf6N2E2_496 0.61 -2.8 563,523 - Pf6N2E2_496 0.61 -0.6 563,523 - Pf6N2E2_496 0.61 +0.3 563,555 + Pf6N2E2_496 0.63 -2.1 563,555 + Pf6N2E2_496 0.63 -1.3 563,556 - Pf6N2E2_496 0.63 +1.6 563,556 - Pf6N2E2_496 0.63 +0.0 563,843 + Pf6N2E2_496 0.86 -2.8 563,936 + -1.9 563,937 - -0.1 563,937 - -0.4 563,937 - +0.3 563,937 - -2.8 563,937 - +0.2 564,024 - -1.6 564,141 - +1.7 564,141 - +1.7 564,617 + Pf6N2E2_497 0.43 -0.8 564,617 + Pf6N2E2_497 0.43 -0.9 564,815 + Pf6N2E2_497 0.58 +0.1 564,815 + Pf6N2E2_497 0.58 -0.2 564,833 + Pf6N2E2_497 0.59 -2.0 564,834 - Pf6N2E2_497 0.59 -2.0 564,834 - Pf6N2E2_497 0.59 -2.2 564,834 - Pf6N2E2_497 0.59 +0.3 565,028 + Pf6N2E2_497 0.74 -2.6 565,197 + Pf6N2E2_497 0.86 +0.7 565,198 - Pf6N2E2_497 0.86 -1.6 565,256 + -1.7 565,262 + +0.1 565,262 + +0.2 565,656 + +1.2 565,658 + +1.2 565,658 + +1.0 565,658 + -1.7 565,658 + +2.9 565,684 + +1.8 565,684 + +0.9 566,224 + Pf6N2E2_498 0.45 -0.3 566,224 + Pf6N2E2_498 0.45 -0.4 566,234 + Pf6N2E2_498 0.46 +3.0 566,262 - Pf6N2E2_498 0.48 -1.5 566,306 + Pf6N2E2_498 0.51 +0.9
Or see this region's nucleotide sequence