Experiment: Hydroxylamine 0.5 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4580 and Pf6N2E2_4581 overlap by 8 nucleotides Pf6N2E2_4581 and Pf6N2E2_4582 are separated by 155 nucleotides Pf6N2E2_4582 and Pf6N2E2_4583 are separated by 57 nucleotides
Pf6N2E2_4580 - FIG015287: Zinc protease, at 5,310,113 to 5,311,603
_4580
Pf6N2E2_4581 - FIG015547: peptidase, M16 family, at 5,311,596 to 5,312,951
_4581
Pf6N2E2_4582 - hypothetical protein, at 5,313,107 to 5,313,238
_4582
Pf6N2E2_4583 - Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1), at 5,313,296 to 5,314,729
_4583
Position (kb) 5311
5312
5313 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5310.651 kb on + strand, within Pf6N2E2_4580 at 5310.954 kb on + strand, within Pf6N2E2_4580 at 5310.954 kb on + strand, within Pf6N2E2_4580 at 5310.954 kb on + strand, within Pf6N2E2_4580 at 5310.954 kb on + strand, within Pf6N2E2_4580 at 5310.954 kb on + strand, within Pf6N2E2_4580 at 5310.955 kb on - strand, within Pf6N2E2_4580 at 5310.970 kb on - strand, within Pf6N2E2_4580 at 5311.373 kb on + strand, within Pf6N2E2_4580 at 5311.373 kb on + strand, within Pf6N2E2_4580 at 5311.373 kb on - strand, within Pf6N2E2_4580 at 5311.374 kb on - strand, within Pf6N2E2_4580 at 5311.527 kb on + strand at 5311.527 kb on + strand at 5311.528 kb on - strand at 5311.528 kb on - strand at 5311.657 kb on + strand at 5311.657 kb on + strand at 5311.658 kb on - strand at 5311.658 kb on - strand at 5311.658 kb on - strand at 5311.679 kb on + strand at 5311.680 kb on - strand at 5311.798 kb on + strand, within Pf6N2E2_4581 at 5311.798 kb on + strand, within Pf6N2E2_4581 at 5311.798 kb on + strand, within Pf6N2E2_4581 at 5311.798 kb on + strand, within Pf6N2E2_4581 at 5311.798 kb on + strand, within Pf6N2E2_4581 at 5311.799 kb on - strand, within Pf6N2E2_4581 at 5311.799 kb on - strand, within Pf6N2E2_4581 at 5311.799 kb on - strand, within Pf6N2E2_4581 at 5311.972 kb on + strand, within Pf6N2E2_4581 at 5311.973 kb on - strand, within Pf6N2E2_4581 at 5311.973 kb on - strand, within Pf6N2E2_4581 at 5311.981 kb on + strand, within Pf6N2E2_4581 at 5311.981 kb on + strand, within Pf6N2E2_4581 at 5311.982 kb on - strand, within Pf6N2E2_4581 at 5311.982 kb on - strand, within Pf6N2E2_4581 at 5312.255 kb on - strand, within Pf6N2E2_4581 at 5312.330 kb on - strand, within Pf6N2E2_4581 at 5312.450 kb on - strand, within Pf6N2E2_4581 at 5312.608 kb on + strand, within Pf6N2E2_4581 at 5312.608 kb on + strand, within Pf6N2E2_4581 at 5312.609 kb on - strand, within Pf6N2E2_4581 at 5312.609 kb on - strand, within Pf6N2E2_4581 at 5312.609 kb on - strand, within Pf6N2E2_4581 at 5312.609 kb on - strand, within Pf6N2E2_4581 at 5312.611 kb on + strand, within Pf6N2E2_4581 at 5312.611 kb on + strand, within Pf6N2E2_4581 at 5312.612 kb on - strand, within Pf6N2E2_4581 at 5312.612 kb on - strand, within Pf6N2E2_4581 at 5312.761 kb on + strand, within Pf6N2E2_4581 at 5312.779 kb on + strand, within Pf6N2E2_4581 at 5312.779 kb on + strand, within Pf6N2E2_4581 at 5312.779 kb on + strand, within Pf6N2E2_4581 at 5313.011 kb on + strand at 5313.057 kb on + strand at 5313.240 kb on + strand at 5313.240 kb on + strand at 5313.240 kb on + strand at 5313.240 kb on + strand at 5313.244 kb on + strand at 5313.244 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hydroxylamine 0.5 M remove 5,310,651 + Pf6N2E2_4580 0.36 +1.8 5,310,954 + Pf6N2E2_4580 0.56 +1.2 5,310,954 + Pf6N2E2_4580 0.56 -1.7 5,310,954 + Pf6N2E2_4580 0.56 -0.4 5,310,954 + Pf6N2E2_4580 0.56 +1.6 5,310,954 + Pf6N2E2_4580 0.56 +2.6 5,310,955 - Pf6N2E2_4580 0.56 -2.4 5,310,970 - Pf6N2E2_4580 0.57 +1.7 5,311,373 + Pf6N2E2_4580 0.85 +0.9 5,311,373 + Pf6N2E2_4580 0.85 +2.8 5,311,373 - Pf6N2E2_4580 0.85 +0.0 5,311,374 - Pf6N2E2_4580 0.85 +0.2 5,311,527 + +1.4 5,311,527 + +1.6 5,311,528 - +2.4 5,311,528 - -3.0 5,311,657 + +0.9 5,311,657 + +0.9 5,311,658 - -0.6 5,311,658 - -1.5 5,311,658 - -2.6 5,311,679 + +2.0 5,311,680 - -1.3 5,311,798 + Pf6N2E2_4581 0.15 +2.0 5,311,798 + Pf6N2E2_4581 0.15 +3.1 5,311,798 + Pf6N2E2_4581 0.15 -0.2 5,311,798 + Pf6N2E2_4581 0.15 -0.6 5,311,798 + Pf6N2E2_4581 0.15 -0.9 5,311,799 - Pf6N2E2_4581 0.15 +0.2 5,311,799 - Pf6N2E2_4581 0.15 +0.4 5,311,799 - Pf6N2E2_4581 0.15 -1.1 5,311,972 + Pf6N2E2_4581 0.28 +1.8 5,311,973 - Pf6N2E2_4581 0.28 -1.9 5,311,973 - Pf6N2E2_4581 0.28 +0.3 5,311,981 + Pf6N2E2_4581 0.28 +0.2 5,311,981 + Pf6N2E2_4581 0.28 +2.8 5,311,982 - Pf6N2E2_4581 0.28 -1.6 5,311,982 - Pf6N2E2_4581 0.28 +0.8 5,312,255 - Pf6N2E2_4581 0.49 +1.7 5,312,330 - Pf6N2E2_4581 0.54 +0.8 5,312,450 - Pf6N2E2_4581 0.63 +2.0 5,312,608 + Pf6N2E2_4581 0.75 -1.4 5,312,608 + Pf6N2E2_4581 0.75 +1.1 5,312,609 - Pf6N2E2_4581 0.75 +1.0 5,312,609 - Pf6N2E2_4581 0.75 -0.9 5,312,609 - Pf6N2E2_4581 0.75 -1.8 5,312,609 - Pf6N2E2_4581 0.75 +0.3 5,312,611 + Pf6N2E2_4581 0.75 +0.9 5,312,611 + Pf6N2E2_4581 0.75 +2.1 5,312,612 - Pf6N2E2_4581 0.75 -1.9 5,312,612 - Pf6N2E2_4581 0.75 -1.7 5,312,761 + Pf6N2E2_4581 0.86 +2.2 5,312,779 + Pf6N2E2_4581 0.87 +0.1 5,312,779 + Pf6N2E2_4581 0.87 +2.7 5,312,779 + Pf6N2E2_4581 0.87 -1.6 5,313,011 + +2.8 5,313,057 + -2.9 5,313,240 + +1.4 5,313,240 + +2.0 5,313,240 + +0.9 5,313,240 + +0.9 5,313,244 + +1.7 5,313,244 + +1.1
Or see this region's nucleotide sequence