Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4204

Experiment: Hydroxylamine 0.5 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4203 and Pf6N2E2_4204 are separated by 5 nucleotidesPf6N2E2_4204 and Pf6N2E2_4205 are separated by 18 nucleotidesPf6N2E2_4205 and Pf6N2E2_4206 are separated by 9 nucleotides Pf6N2E2_4203 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA, at 4,894,028 to 4,895,926 _4203 Pf6N2E2_4204 - rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB, at 4,895,932 to 4,896,567 _4204 Pf6N2E2_4205 - Chromosome (plasmid) partitioning protein ParA, at 4,896,586 to 4,897,383 _4205 Pf6N2E2_4206 - Chromosome (plasmid) partitioning protein ParB, at 4,897,393 to 4,898,265 _4206 Position (kb) 4895 4896 4897Strain fitness (log2 ratio) -3 -2 -1 0 1at 4896.059 kb on - strand, within Pf6N2E2_4204at 4896.059 kb on - strand, within Pf6N2E2_4204at 4896.304 kb on - strand, within Pf6N2E2_4204at 4896.549 kb on - strandat 4896.592 kb on - strandat 4896.597 kb on - strandat 4896.597 kb on - strandat 4896.646 kb on - strandat 4896.766 kb on + strand, within Pf6N2E2_4205at 4896.767 kb on - strand, within Pf6N2E2_4205at 4896.941 kb on - strand, within Pf6N2E2_4205at 4896.947 kb on - strand, within Pf6N2E2_4205at 4896.947 kb on - strand, within Pf6N2E2_4205at 4896.947 kb on - strand, within Pf6N2E2_4205at 4897.039 kb on + strand, within Pf6N2E2_4205at 4897.040 kb on - strand, within Pf6N2E2_4205at 4897.040 kb on - strand, within Pf6N2E2_4205at 4897.142 kb on - strand, within Pf6N2E2_4205at 4897.142 kb on - strand, within Pf6N2E2_4205at 4897.381 kb on + strandat 4897.381 kb on + strandat 4897.537 kb on + strand, within Pf6N2E2_4206at 4897.537 kb on + strand, within Pf6N2E2_4206at 4897.538 kb on - strand, within Pf6N2E2_4206

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxylamine 0.5 M
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4,896,059 - Pf6N2E2_4204 0.20 -0.5
4,896,059 - Pf6N2E2_4204 0.20 +0.7
4,896,304 - Pf6N2E2_4204 0.58 -1.2
4,896,549 - -0.5
4,896,592 - -2.0
4,896,597 - +1.1
4,896,597 - -0.3
4,896,646 - +1.5
4,896,766 + Pf6N2E2_4205 0.23 +0.5
4,896,767 - Pf6N2E2_4205 0.23 -1.4
4,896,941 - Pf6N2E2_4205 0.44 +1.2
4,896,947 - Pf6N2E2_4205 0.45 -0.5
4,896,947 - Pf6N2E2_4205 0.45 -2.4
4,896,947 - Pf6N2E2_4205 0.45 -0.0
4,897,039 + Pf6N2E2_4205 0.57 +0.9
4,897,040 - Pf6N2E2_4205 0.57 -2.7
4,897,040 - Pf6N2E2_4205 0.57 -2.0
4,897,142 - Pf6N2E2_4205 0.70 -3.3
4,897,142 - Pf6N2E2_4205 0.70 -0.1
4,897,381 + -0.9
4,897,381 + -0.4
4,897,537 + Pf6N2E2_4206 0.16 +0.5
4,897,537 + Pf6N2E2_4206 0.16 -1.6
4,897,538 - Pf6N2E2_4206 0.17 -0.3

Or see this region's nucleotide sequence